EsuBft2522_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2522_2a-0001
Unique Name	EsuBft2522_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:33174..34345 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2522_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	117
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_2a	EsuBft2522_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 33174..34345 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_2a-0001-exon	EsuBft2522_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 33174..34345 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_2a-0001-exon	agat-five_prime_utr-6520	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_30 33174..33234 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_2a-0001-cds	EsuBft2522_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 33235..33666 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_2a-0001-exon	agat-three_prime_utr-10184	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 33667..34345 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_2a-0001	EsuBft2522_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 33235..33666 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:33174..34345+
coding sequence from alignment at Scaffold_30:33174..34345+

spliced messenger RNA

>EsuBft2522_2a-0001 ID=EsuBft2522_2a-0001|Name=EsuBft2522_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1172bp|location=Sequence derived from alignment at Scaffold_30:33174..34345+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACGTGTTTCG
CGGGCTTTGTTATGCGCATGGACGACAGCCGCCTCCCCAAGCGCAAGCTG
TTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGTGGGCAGGAGAGCAA
CTGGGTGTCTCGTCTAGGAGAGGACTTCGTGGCCTTCAACATGGGAGACG
AAAAAGGAGGGGGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGG
TACAAGAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAACTGGCACAT
GCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAG
CAGAGAGTATGGCCATCTCAGGACCGAAGAGAAAGAGAGACGGAGAAGCG
GCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAG
GGCCGCCGAGGGAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTT
GCGCCCTGTTTCCTTCCCTGCTGATGCTTATAAGGAATATATGATTCCTC
GGGGTAACTTGCCATCGGGAGAAGTGGCGAGTAAGGCACCGAGGAGATTC
CTCCTTTATGTACGTATGTCCGTTGTATTGCCTTCGGCCTCTGTGCTGTT
TCTTTTTTTCATGACCTCCCTGCCTACTTTGCTGTGTTGGGTACCTTGAT
CTCGCTTTGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCT
GCCGCCTCTTTGTCCTGTTTGCTCTGTTTCTCCTGTTCGTGAGCCCTAGC
CCTGTTAAGGGCCGGCGGACTTGGGGCTGCTGTTTAACTGTGTGTATTAG
CTCGCATGAGAGAGGAGAGAGGGAGAAGGAGGAGAGGCCCCAATTCTCGA
GAGAACACGGGGACTCCGCACTATCATCCAAAGCCTCTCAGCACATACCC
TTCAAGTTGTCCCAGCTGCGTCCTACGTAACGGCTACTTTTCAACTATCT
ACTTCTACGCACGAACACCCTCCCTGGTTCTTTACGCCAGTGAAGAACCT
CTAGTGCGTCGAAAATACGTTTGAAAAACCTTAACACAACGACAAACCAA
AAGTAAAGGGGAAACCCGGCCACCGGATTAAAACCCCTCAGAAATTCAAC
GCCTCACGCCGATCATATCACG

protein sequence of EsuBft2522_2a-0001

>EsuBft2522_2 ID=EsuBft2522_2|Name=EsuBft2522_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MRMDDSRLPKRKLLGAMAGGVGYRGGQESNWVSRLGEDFVAFNMGDEKGG
GKWKESAKDPEVWYKKVEDGAAWFMRNWHMQEAEASAKRQRAREAEAESM
AISGPKRKRDGEAAVGGKKRRPGTAVEASRAAEGALVANYVPG

mRNA from alignment at Scaffold_30:33174..34345+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2522_2a-0001 ID=EsuBft2522_2a-0001|Name=EsuBft2522_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1172bp|location=Sequence derived from alignment at Scaffold_30:33174..34345+ (Ectocarpus subulatus male Bft15b)
GCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACGTGTTTCG
CGGGCTTTGTTATGCGCATGGACGACAGCCGCCTCCCCAAGCGCAAGCTG
TTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGTGGGCAGGAGAGCAA
CTGGGTGTCTCGTCTAGGAGAGGACTTCGTGGCCTTCAACATGGGAGACG
AAAAAGGAGGGGGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGG
TACAAGAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAACTGGCACAT
GCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAG
CAGAGAGTATGGCCATCTCAGGACCGAAGAGAAAGAGAGACGGAGAAGCG
GCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAG
GGCCGCCGAGGGAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTT
GCGCCCTGTTTCCTTCCCTGCTGATGCTTATAAGGAATATATGATTCCTC
GGGGTAACTTGCCATCGGGAGAAGTGGCGAGTAAGGCACCGAGGAGATTC
CTCCTTTATGTACGTATGTCCGTTGTATTGCCTTCGGCCTCTGTGCTGTT
TCTTTTTTTCATGACCTCCCTGCCTACTTTGCTGTGTTGGGTACCTTGAT
CTCGCTTTGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCT
GCCGCCTCTTTGTCCTGTTTGCTCTGTTTCTCCTGTTCGTGAGCCCTAGC
CCTGTTAAGGGCCGGCGGACTTGGGGCTGCTGTTTAACTGTGTGTATTAG
CTCGCATGAGAGAGGAGAGAGGGAGAAGGAGGAGAGGCCCCAATTCTCGA
GAGAACACGGGGACTCCGCACTATCATCCAAAGCCTCTCAGCACATACCC
TTCAAGTTGTCCCAGCTGCGTCCTACGTAACGGCTACTTTTCAACTATCT
ACTTCTACGCACGAACACCCTCCCTGGTTCTTTACGCCAGTGAAGAACCT
CTAGTGCGTCGAAAATACGTTTGAAAAACCTTAACACAACGACAAACCAA
AAGTAAAGGGGAAACCCGGCCACCGGATTAAAACCCCTCAGAAATTCAAC
GCCTCACGCCGATCATATCACG

Coding sequence (CDS) from alignment at Scaffold_30:33174..34345+

>EsuBft2522_2a-0001 ID=EsuBft2522_2a-0001|Name=EsuBft2522_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_30:33174..34345+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGGACGACAGCCGCCTCCCCAAGCGCAAGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGTGGGCAGGAGAGCAACTGGGTGTCTC
GTCTAGGAGAGGACTTCGTGGCCTTCAACATGGGAGACGAAAAAGGAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAAGAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAACTGGCACATGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTATG
GCCATCTCAGGACCGAAGAGAAAGAGAGACGGAGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCCGCCGAGG
GAGCACTTGTGGCGAACTATGTACCCGGCTGA