EsuBft2498_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2498_5a-0001
Unique NameEsuBft2498_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:795848..797617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2498_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length132
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_5aEsuBft2498_5aEctocarpus subulatus male Bft15bgeneScaffold_242 795848..797617 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_5a-0001-exonagat-exon-59921Ectocarpus subulatus male Bft15bexonScaffold_242 795848..795863 +
EsuBft2498_5a-0001-exonagat-exon-59922Ectocarpus subulatus male Bft15bexonScaffold_242 796191..796730 +
EsuBft2498_5a-0001-exonagat-exon-59923Ectocarpus subulatus male Bft15bexonScaffold_242 796787..797278 +
EsuBft2498_5a-0001-exonEsuBft2498_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 797343..797617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_5a-0001-cdsEsuBft2498_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 795848..795863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_5a-0001EsuBft2498_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 795848..797617 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2498_5a-0001 ID=EsuBft2498_5a-0001|Name=EsuBft2498_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1323bp|location=Sequence derived from alignment at Scaffold_242:795848..797617+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGCGATTCCAATTATCTCCCCCGAGGACACCACGAATTGCAAGGT
GCTGGAGGTAGCAGGCGATGGTCATTGCGCTCTGCACGGCATCTACAGGC
TGCTGCACCCCGAGCGAGATAGCGTCTTCGGTGCACTAGCAAGCGAGATA
ACACAGACCCGCAAAGATGTCGGCCTGGAAATGATAACTGCTGTTTTCTC
TGAGGACTACGAGCAGCTAGTGGACAAGACGGTGTCTGACGAGGAAATGC
TGAGACTTGGCAAGCTCGACTACGAGAGGGGTTTCTACCGAAAGCGCACC
CCCTCCGCCGGCCGAGCTGCAAGAGCTGTAGGACACAAACCACTCAAGAC
TGTGCGAGAGGTGGTGGCGGGCATCGAGGATCAACTGGAGCACGATTACT
TGGCGATAGGTCAGCTGGCGTTAGTAGCTGCGGTGAAACGTTGCAATATC
GTGGTCTGGGAAGCAAAAACTGGAGGTGGGCTTCGAATCGTGGAAATGGG
CGACACCACGGGCTGTTTCGTTGGCGATCTTTATCAGGATGAGTTCTGCA
CCTGGTTGCGCAACCCAAGCAGCAGCAACGTGGCGGAAACAACATTCAAC
CACTTTAGCGCCATCTTTATCCCACAAGAATCCGTCCCATGGGCAAAGCC
ATACATGCTACAACGGGGATCCTCTGGTCGATCTGTGTTTGGGCACGAGA
AGCCTCCAGACAATTTTTGCCCGTGCCCAACCACATCGGACGAGCGTCCG
ATGAAACATCAGGGCTCTCCCGTGCCGATCGACGTGGATGACGAGACCGA
GACAAGCAGCAGCGTGCGATCGCGACCTTCTGCTGGAGGTGCCGGGCCCG
TCAAAACGGCGTCACCCAGGGATGTACCGGAGAGGAAGGCGACGCCGCCT
GGGAAAGCGGTGACGAAGCCCGCGGTAGTTCCTTTCGCGAGCGGCATGTC
GGTAACGACCAGGTCGAAGGAGAAGCCCATGCCGAAGGAGAAACCACTCG
AGCTCTACAGCAGCAAGCCCTGTGGGGCCGAAGCGAAATCTCCCTGCGGG
GGTGATGACGAAGCGGAGTACGAACAGGAGCCTGAGGGGGACGACGACAT
GAGTGACGGCGGTAGTGAGGGCGAGTTTCCGGGGGACGCAGCAGACTACG
ACCAGGATGTGTTCGTGAGTGGCAAGAGCCCTCAGCAGGTCAAGGCGATG
GTGGACAAGATACAGGAGGCCTGGGGAAAGGAGGCACTGACTTTCATCTT
TGGGTTGGCGCAAAACACCAAGCAACTCGTGCAAGACCGCAACGTAAGGA
TGGGCGCATTTTTTTTTCGGTGA
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protein sequence of EsuBft2498_5a-0001

>EsuBft2498_5 ID=EsuBft2498_5|Name=EsuBft2498_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=440bp
MRAIPIISPEDTTNCKVLEVAGDGHCALHGIYRLLHPERDSVFGALASEI
TQTRKDVGLEMITAVFSEDYEQLVDKTVSDEEMLRLGKLDYERGFYRKRT
PSAGRAARAVGHKPLKTVREVVAGIEDQLEHDYLAIGQLALVAAVKRCNI
VVWEAKTGGGLRIVEMGDTTGCFVGDLYQDEFCTWLRNPSSSNVAETTFN
HFSAIFIPQESVPWAKPYMLQRGSSGRSVFGHEKPPDNFCPCPTTSDERP
MKHQGSPVPIDVDDETETSSSVRSRPSAGGAGPVKTASPRDVPERKATPP
GKAVTKPAVVPFASGMSVTTRSKEKPMPKEKPLELYSSKPCGAEAKSPCG
GDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQDVFVSGKSPQQVKAM
VDKIQEAWGKEALTFIFGLAQNTKQLVQDRNVRMGAFFFR
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mRNA from alignment at Scaffold_242:795848..797617+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2498_5a-0001 ID=EsuBft2498_5a-0001|Name=EsuBft2498_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1770bp|location=Sequence derived from alignment at Scaffold_242:795848..797617+ (Ectocarpus subulatus male Bft15b)
ATGCGAGCGATTCCAAGTTACATCTTTCGTGCAATTTTCGTTGAAATAAC
TCGCTCGCGTGATCTCGTGCCTTGCGAGACTGTGAGAGTGCGGCCAATGG
TCATCCGACGAATGTTGTATGCTATGATGGGCCGCACGCCGCTGCGGAGC
TTCAGGATGCAACACACACAAAAACAAAAAAGTTTAAAAAGTTTATTCCA
AAATCTACACCGCCACTCGTGGTATGCTGGTGCGAACCCCGGTTGGCAAG
ACAGACACATGACATCTTGGGAACACGATGCACAAAAGCACGGCCGACAA
CTGCTGCATGCAGCCTAAACGCGTACTGGCGGTGGTCTCCCAGTTATCTC
CCCCGAGGACACCACGAATTGCAAGGTGCTGGAGGTAGCAGGCGATGGTC
ATTGCGCTCTGCACGGCATCTACAGGCTGCTGCACCCCGAGCGAGATAGC
GTCTTCGGTGCACTAGCAAGCGAGATAACACAGACCCGCAAAGATGTCGG
CCTGGAAATGATAACTGCTGTTTTCTCTGAGGACTACGAGCAGCTAGTGG
ACAAGACGGTGTCTGACGAGGAAATGCTGAGACTTGGCAAGCTCGACTAC
GAGAGGGGTTTCTACCGAAAGCGCACCCCCTCCGCCGGCCGAGCTGCAAG
AGCTGTAGGACACAAACCACTCAAGACTGTGCGAGAGGTGGTGGCGGGCA
TCGAGGATCAACTGGAGCACGATTACTTGGCGATAGGTCAGCTGGCGTTA
GTAGCTGCGGTGAAACGTTGCAATATCGTGGTCTGGGAAGCAAAAACTGG
AGGTGGGCTTCGAATCGTGGAAATGGGCGACACCACGGGCTGTTTCGTTG
GCGATCTTTATCAGGATGAGTTCTGCACCTGGTGTACAATGAATTCGGGG
GCTACAACGCAGCTACGTATGCTGCGGGTACGGCTTCAGTGCGCAACCCA
AGCAGCAGCAACGTGGCGGAAACAACATTCAACCACTTTAGCGCCATCTT
TATCCCACAAGAATCCGTCCCATGGGCAAAGCCATACATGCTACAACGGG
GATCCTCTGGTCGATCTGTGTTTGGGCACGAGAAGCCTCCAGACAATTTT
TGCCCGTGCCCAACCACATCGGACGAGCGTCCGATGAAACATCAGGGCTC
TCCCGTGCCGATCGACGTGGATGACGAGACCGAGACAAGCAGCAGCGTGC
GATCGCGACCTTCTGCTGGAGGTGCCGGGCCCGTCAAAACGGCGTCACCC
AGGGATGTACCGGAGAGGAAGGCGACGCCGCCTGGGAAAGCGGTGACGAA
GCCCGCGGTAGTTCCTTTCGCGAGCGGCATGTCGGTAACGACCAGGTCGA
AGGAGAAGCCCATGCCGAAGGAGAAACCACTCGAGCTCTACAGCAGCAAG
CCCTGTGGGGCCGAAGCGAAATCTCCCTGCGGTATGTTCTGTAATAAGCA
CAGCCGGCAGGGTAGGGAGCCGTACATGCGGTAGGGGTGTACAAGGGGGT
GATGACGAAGCGGAGTACGAACAGGAGCCTGAGGGGGACGACGACATGAG
TGACGGCGGTAGTGAGGGCGAGTTTCCGGGGGACGCAGCAGACTACGACC
AGGATGTGTTCGTGAGTGGCAAGAGCCCTCAGCAGGTCAAGGCGATGGTG
GACAAGATACAGGAGGCCTGGGGAAAGGAGGCACTGACTTTCATCTTTGG
GTTGGCGCAAAACACCAAGCAACTCGTGCAAGACCGCAACGTAAGGATGG
GCGCATTTTTTTTTCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_242:795848..797617+

>EsuBft2498_5a-0001 ID=EsuBft2498_5a-0001|Name=EsuBft2498_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1323bp|location=Sequence derived from alignment at Scaffold_242:795848..797617+ (Ectocarpus subulatus male Bft15b)
ATGCGAGCGATTCCAATTATCTCCCCCGAGGACACCACGAATTGCAAGGT
GCTGGAGGTAGCAGGCGATGGTCATTGCGCTCTGCACGGCATCTACAGGC
TGCTGCACCCCGAGCGAGATAGCGTCTTCGGTGCACTAGCAAGCGAGATA
ACACAGACCCGCAAAGATGTCGGCCTGGAAATGATAACTGCTGTTTTCTC
TGAGGACTACGAGCAGCTAGTGGACAAGACGGTGTCTGACGAGGAAATGC
TGAGACTTGGCAAGCTCGACTACGAGAGGGGTTTCTACCGAAAGCGCACC
CCCTCCGCCGGCCGAGCTGCAAGAGCTGTAGGACACAAACCACTCAAGAC
TGTGCGAGAGGTGGTGGCGGGCATCGAGGATCAACTGGAGCACGATTACT
TGGCGATAGGTCAGCTGGCGTTAGTAGCTGCGGTGAAACGTTGCAATATC
GTGGTCTGGGAAGCAAAAACTGGAGGTGGGCTTCGAATCGTGGAAATGGG
CGACACCACGGGCTGTTTCGTTGGCGATCTTTATCAGGATGAGTTCTGCA
CCTGGTTGCGCAACCCAAGCAGCAGCAACGTGGCGGAAACAACATTCAAC
CACTTTAGCGCCATCTTTATCCCACAAGAATCCGTCCCATGGGCAAAGCC
ATACATGCTACAACGGGGATCCTCTGGTCGATCTGTGTTTGGGCACGAGA
AGCCTCCAGACAATTTTTGCCCGTGCCCAACCACATCGGACGAGCGTCCG
ATGAAACATCAGGGCTCTCCCGTGCCGATCGACGTGGATGACGAGACCGA
GACAAGCAGCAGCGTGCGATCGCGACCTTCTGCTGGAGGTGCCGGGCCCG
TCAAAACGGCGTCACCCAGGGATGTACCGGAGAGGAAGGCGACGCCGCCT
GGGAAAGCGGTGACGAAGCCCGCGGTAGTTCCTTTCGCGAGCGGCATGTC
GGTAACGACCAGGTCGAAGGAGAAGCCCATGCCGAAGGAGAAACCACTCG
AGCTCTACAGCAGCAAGCCCTGTGGGGCCGAAGCGAAATCTCCCTGCGGG
GGTGATGACGAAGCGGAGTACGAACAGGAGCCTGAGGGGGACGACGACAT
GAGTGACGGCGGTAGTGAGGGCGAGTTTCCGGGGGACGCAGCAGACTACG
ACCAGGATGTGTTCGTGAGTGGCAAGAGCCCTCAGCAGGTCAAGGCGATG
GTGGACAAGATACAGGAGGCCTGGGGAAAGGAGGCACTGACTTTCATCTT
TGGGTTGGCGCAAAACACCAAGCAACTCGTGCAAGACCGCAACGTAAGGA
TGGGCGCATTTTTTTTTCGGTGA
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