EsuBft2498_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2498_4a-0001
Unique NameEsuBft2498_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:791499..793270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G933
ProteomeIdEsuBft2498_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length149
Hectar predicted targeting categoryother localisation
Evalue6.01e-17
EggNOG OGsCOG1025@1|root,KOG0959@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K01408
KEGG Pathwayko05010,map05010
EC3.4.24.56
Descriptionmetalloendopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_4aEsuBft2498_4aEctocarpus subulatus male Bft15bgeneScaffold_242 791499..793270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_4a-0001EsuBft2498_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 791848..793270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_4a-0001-exonagat-exon-59918Ectocarpus subulatus male Bft15bexonScaffold_242 791499..792066 -
EsuBft2498_4a-0001-exonEsuBft2498_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 792188..792869 -
EsuBft2498_4a-0001-exonagat-exon-59920Ectocarpus subulatus male Bft15bexonScaffold_242 792937..793064 -
EsuBft2498_4a-0001-exonagat-exon-59919Ectocarpus subulatus male Bft15bexonScaffold_242 793154..793270 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_4a-0001-exonagat-three_prime_utr-10079Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 791499..791847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_4a-0001-cdsEsuBft2498_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 791848..792066 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2498_4a-0001 ID=EsuBft2498_4a-0001|Name=EsuBft2498_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_242:791499..793270- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGCAGCAGCCGGCCGCACCTGGCCGCCGACACCCAAGCCAGGA
GGTGGCGAGGAAGGAGCCCCGACCTCGCCACCACCGGAAGGACGAAGATG
GGAAGGAGATCCCTGCACCAGTGGCACCGGCTCTCCCTGCTTCATTCCCC
TCCCTAGCGCGATCCAAATCATCAGCGGCGGAGGAGACCGCTGGGGCAAA
GTTCGCCTCGCTCCCGCCGATGGTGTCGCGTCGCGGGAGCTCCGTGACGT
GTTCGTGTCGAGCCTTGAGGACGATGTGCTGTGGAGCTGCCGAGGGCTGG
GCATCGGCGGGGGTTGCGAGCGACAACCGGTCACCCGGCGGTTTTGATTG
GATCCCGTCCTACGTGGAGGTGAACGCGACGCCCTTGAACGATGCGCCCA
AGGCGCTGGAGGCAATACTGATGGCCGCCGAACAAGAGTCGGTGTTGACG
ACCGACCAAACCGCTACCACCGCAGCTCCTCGTCCGGCAGGCAGGTTTGC
GGGTCAGCCGCCGCCCTCGGCGGCACTGGCGCCGCAAGAGCCGATGATAT
CCCAGATGCTCCCGAGTCGCGCATCTTCCCCGAGTGTGGTGTTCGCCCAG
CGCAGCCCGGGTGCCGGCGGCGGCTACCGCGGCGGCGGCGAAAGCAGCGA
CGGGTTGCCAATCTGGGCAAAAATCAGCGAAGACGACGAACCCATCGTCG
TCAACGTGCTCCCCGCAGCAAGCGGCAGCAGCAGCAGCAGCAGCAGCGGA
ATGCTCCAGAACTCTCTCGGAGGAACAAGCTATTTGAAGGCCGCCGACTG
CGGGGACGGCGCGTGCAACCCTATCTCGGCGTGGACACCGGAGCCTGTCG
TGGCCGGCGCTTCGGCGCTCCTCGTTGTGCTCTCCGACGCAGACTTCTTC
AGCAGCGTCCGCAGCGATACTCTGACGGGCATGGTGCCAAGTTCTCCTCC
TGCTGCCATGCCGACGCTCGTCGCCGATGGATTCTGGCACTCTGAAATCA
CCGCTACTGACGGTGCTCTCTCGAAGAACCAACGTCACTATTCCCACCGC
CAACAGCAACAACAGCAGCAGCAGCAGCGTCTCGCCCTCGCCCCGCCTGA
TATCCGTGGCTTGATCAAAGAGCTTGTTGGTTTTATTGTTGCGTGATCGG
TCGGGTGGTGACCTCATCTCTCCCTTGCTGAACGTGGTTGATGTGCCCAC
CGAGCCAGACTTGTTTCGTAAGATTCTTACTTTCGATCTTAGTTAACACG
ACCAGGATAAATAGTCATGGTTGGGTGTGTTGCTTTTGATGTTGTGGCAC
TACGTGTAGCAAGTAGGTGGGTTGATGCAGGAAGCCCACGTTACTACATT
GCTTGCTGTTTTCAGTAGCCCTTTTGGGTGACATTTGGTGCAGCCTAGAA
GTAGATTTCAGTTGTTTGTTTTTTATATGTTGTTGGTATTCGGTCGTGTT
CCAACAGGTGTGAGTCAAATCACTCTTCTGCTGTTGTGATCGCCC
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protein sequence of EsuBft2498_4a-0001

>EsuBft2498_4 ID=EsuBft2498_4|Name=EsuBft2498_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MKRQQPAAPGRRHPSQEVARKEPRPRHHRKDEDGKEIPAPVAPALPASFP
SLARSKSSAAEETAGAKFASLPPMVSRRGSSVTCSCRALRTMCCGAAEGW
ASAGVASDNRSPGGFDWIPSYVEVNATPLNDAPKALEAILMAAEQESVLT
TDQTATTAAPRPAGRFAGQPPPSAALAPQEPMISQMLPSRASSPSVVFAQ
RSPGAGGGYRGGGESSDGLPIWAKISEDDEPIVVNVLPAASGSSSSSSSG
MLQNSLGGTSYLKAADCGDGACNPISAWTPEPVVAGASALLVVLSDADFF
SSVRSDTLTGMVPSSPPAAMPTLVADGFWHSEITATDGALSKNQRHYSHR
QQQQQQQQQRLALAPPDIRGLIKELVGFIVA
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mRNA from alignment at Scaffold_242:791499..793270-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2498_4a-0001 ID=EsuBft2498_4a-0001|Name=EsuBft2498_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1772bp|location=Sequence derived from alignment at Scaffold_242:791499..793270- (Ectocarpus subulatus male Bft15b)
ATGAAGAGGCAGCAGCCGGCCGCACCTGGCCGCCGACACCCAAGCCAGGA
GGTGGCGAGGAAGGAGCCCCGACCTCGCCACCACCGGAAGGACGAAGATG
GGAAGGAGATCCCTGCAGTAAAGAGCCCCGCCCCGGCAGCAGCAGCAGCC
ACTGCCGTTGTTTCCCCGTCCAACGGCACGCCACCAGTCGCTTCGCCCGC
CAGCAGCCAGTGGCACCGGCTCTCCCTGCTTCATTCCCCTCCCTAGCGCG
ATCCAAATCATCAGCGGCGGAGGAGACCGCTGGGGCAAAGTTCGCCTCGC
TCCCGCCGATGGTGTCGCGTCGCGGGAGCTCCGTGTCAGCTCCGGGCTCG
GAATCCAGCGTCGACGGCAGCTCGTCTTCGCTGAGCTGGGACGACGTTCA
GGACGTGTTCGTGTCGAGCCTTGAGGACGATGTGCTGTGGAGCTGCCGAG
GGCTGGGCATCGGCGGGGGTTGCGAGCGACAACCGGTCACCCGGCGGTTT
TGATTGGATCCCGTCCTACGTGGAGGTGAACGCGACGCCCTTGAACGATG
CGCCCAAGGCGCTGGAGGCAATACTGATGGCCGCCGAACAAGAGTCGGTG
TTGACGACCGACCAAACCGCTACCACCGCAGCTCCTCGTCCGGCAGGCAG
GTTTGCGGGTCAGCCGCCGCCCTCGGCGGCACTGGCGCCGCAAGAGCCGA
TGATATCCCAGATGCTCCCGAGTCGCGCATCTTCCCCGAGTGTGGTGTTC
GCCCAGCGCAGCCCGGGTGCCGGCGGCGGCTACCGCGGCGGCGGCGAAAG
CAGCGACGGGTTGCCAATCTGGGCAAAAATCAGCGAAGACGACGAACCCA
TCGTCGTCAACGTGCTCCCCGCAGCAAGCGGCAGCAGCAGCAGCAGCAGC
AGCGGAATGCTCCAGAACTCTCTCGGAGGAACAAGCTATTTGAAGGCCGC
CGACTGCGGGGACGGCGCGTGCAACCCTATCTCGGCGTGGACACCGGAGC
CTGTCGTGGCCGGCGCTTCGGCGCTCCTCGTTGTGCTCTCCGACGCAGAC
TTCTTCAGCAGCGTCCGCAGCGATACTCTGACGGTTGGCAACGGTTGGCA
ACGGTTGGGGGGGCGAGCGCAGGCACCAGCAGCACCAGCAGCAGCGCAAC
GACGACAGCAGCACGCGCTGGAGCTGGGCGCCGAGGGACTTGCGCGCGAA
CTAGGGCATGGTGCCAAGTTCTCCTCCTGCTGCCATGCCGACGCTCGTCG
CCGATGGATTCTGGCACTCTGAAATCACCGCTACTGACGGTGCTCTCTCG
AAGAACCAACGTCACTATTCCCACCGCCAACAGCAACAACAGCAGCAGCA
GCAGCGTCTCGCCCTCGCCCCGCCTGATATCCGTGGCTTGATCAAAGAGC
TTGTTGGTTTTATTGTTGCGTGATCGGTCGGGTGGTGACCTCATCTCTCC
CTTGCTGAACGTGGTTGATGTGCCCACCGAGCCAGACTTGTTTCGTAAGA
TTCTTACTTTCGATCTTAGTTAACACGACCAGGATAAATAGTCATGGTTG
GGTGTGTTGCTTTTGATGTTGTGGCACTACGTGTAGCAAGTAGGTGGGTT
GATGCAGGAAGCCCACGTTACTACATTGCTTGCTGTTTTCAGTAGCCCTT
TTGGGTGACATTTGGTGCAGCCTAGAAGTAGATTTCAGTTGTTTGTTTTT
TATATGTTGTTGGTATTCGGTCGTGTTCCAACAGGTGTGAGTCAAATCAC
TCTTCTGCTGTTGTGATCGCCC
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Coding sequence (CDS) from alignment at Scaffold_242:791499..793270-

>EsuBft2498_4a-0001 ID=EsuBft2498_4a-0001|Name=EsuBft2498_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1146bp|location=Sequence derived from alignment at Scaffold_242:791499..793270- (Ectocarpus subulatus male Bft15b)
ATGAAGAGGCAGCAGCCGGCCGCACCTGGCCGCCGACACCCAAGCCAGGA
GGTGGCGAGGAAGGAGCCCCGACCTCGCCACCACCGGAAGGACGAAGATG
GGAAGGAGATCCCTGCACCAGTGGCACCGGCTCTCCCTGCTTCATTCCCC
TCCCTAGCGCGATCCAAATCATCAGCGGCGGAGGAGACCGCTGGGGCAAA
GTTCGCCTCGCTCCCGCCGATGGTGTCGCGTCGCGGGAGCTCCGTGACGT
GTTCGTGTCGAGCCTTGAGGACGATGTGCTGTGGAGCTGCCGAGGGCTGG
GCATCGGCGGGGGTTGCGAGCGACAACCGGTCACCCGGCGGTTTTGATTG
GATCCCGTCCTACGTGGAGGTGAACGCGACGCCCTTGAACGATGCGCCCA
AGGCGCTGGAGGCAATACTGATGGCCGCCGAACAAGAGTCGGTGTTGACG
ACCGACCAAACCGCTACCACCGCAGCTCCTCGTCCGGCAGGCAGGTTTGC
GGGTCAGCCGCCGCCCTCGGCGGCACTGGCGCCGCAAGAGCCGATGATAT
CCCAGATGCTCCCGAGTCGCGCATCTTCCCCGAGTGTGGTGTTCGCCCAG
CGCAGCCCGGGTGCCGGCGGCGGCTACCGCGGCGGCGGCGAAAGCAGCGA
CGGGTTGCCAATCTGGGCAAAAATCAGCGAAGACGACGAACCCATCGTCG
TCAACGTGCTCCCCGCAGCAAGCGGCAGCAGCAGCAGCAGCAGCAGCGGA
ATGCTCCAGAACTCTCTCGGAGGAACAAGCTATTTGAAGGCCGCCGACTG
CGGGGACGGCGCGTGCAACCCTATCTCGGCGTGGACACCGGAGCCTGTCG
TGGCCGGCGCTTCGGCGCTCCTCGTTGTGCTCTCCGACGCAGACTTCTTC
AGCAGCGTCCGCAGCGATACTCTGACGGGCATGGTGCCAAGTTCTCCTCC
TGCTGCCATGCCGACGCTCGTCGCCGATGGATTCTGGCACTCTGAAATCA
CCGCTACTGACGGTGCTCTCTCGAAGAACCAACGTCACTATTCCCACCGC
CAACAGCAACAACAGCAGCAGCAGCAGCGTCTCGCCCTCGCCCCGCCTGA
TATCCGTGGCTTGATCAAAGAGCTTGTTGGTTTTATTGTTGCGTGA
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