EsuBft2498_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2498_3a-0001
Unique NameEsuBft2498_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:779775..780130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LE09
ProteomeIdEsuBft2498_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length27
Evalue3.84e-28
EggNOG OGsCOG5347@1|root,KOG0704@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionGTPase activator activity
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_3aEsuBft2498_3aEctocarpus subulatus male Bft15bgeneScaffold_242 779775..780130 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_3a-0001-exonEsuBft2498_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 779775..779976 +
EsuBft2498_3a-0001-exonagat-exon-59917Ectocarpus subulatus male Bft15bexonScaffold_242 780060..780130 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_3a-0001-exonagat-five_prime_utr-6454Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 779775..779791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_3a-0001-cdsEsuBft2498_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 779792..779976 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_3a-0001-exonagat-three_prime_utr-10078Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 780082..780130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2498_3a-0001EsuBft2498_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 779792..780081 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2498_3a-0001 ID=EsuBft2498_3a-0001|Name=EsuBft2498_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=273bp|location=Sequence derived from alignment at Scaffold_242:779775..780130+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGAAAGCCTGCGCCTCATGGAGGCCGGCGGCAATAAACGGTTGGCGGAG
TTCTCGAGACGGGTGGGCGTCTACCGGTGGTCTACCATGGAAGAGAAGTA
CCGACACCCTTGCCTCCCGCTGTACCGGAGGCGCCTTGCCGCCCTGGCGC
ACGGGGAGAAGCCTCCGCCGATCTCGAGGGAAGCCCTGGAACAGGCGAGA
GCGGGGGGGAGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft2498_3a-0001

>EsuBft2498_3 ID=EsuBft2498_3|Name=EsuBft2498_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MEAGGNKRLAEFSRRVGVYRWSTMEEKYRHPCLPLYRRRLAALAHGEKPP
PISREALEQARAGGRGGGX
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mRNA from alignment at Scaffold_242:779775..780130+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2498_3a-0001 ID=EsuBft2498_3a-0001|Name=EsuBft2498_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=356bp|location=Sequence derived from alignment at Scaffold_242:779775..780130+ (Ectocarpus subulatus male Bft15b)
ACGAAAGCCTGCGCCTCATGGAGGCCGGCGGCAATAAACGGTTGGCGGAG
TTCTCGAGACGGGTGGGCGTCTACCGGTGGTCTACCATGGAAGAGAAGTA
CCGACACCCTTGCCTCCCGCTGTACCGGAGGCGCCTTGCCGCCCTGGCGC
ACGGGGAGAAGCCTCCGCCGATCTCGAGGGAAGCCCTGGAACAGGCGAGA
GCGTTATTTTGGTGATAAAAAAGGGTCGTGGAAGGGGGTGAGGAAAGTGG
TGTTACTGTTTTGTAAGTGGTGGAGGTACGGGGAGGGGGGGGAGGGGGGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNN
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Coding sequence (CDS) from alignment at Scaffold_242:779775..780130+

>EsuBft2498_3a-0001 ID=EsuBft2498_3a-0001|Name=EsuBft2498_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_242:779775..780130+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCCGGCGGCAATAAACGGTTGGCGGAGTTCTCGAGACGGGTGGG
CGTCTACCGGTGGTCTACCATGGAAGAGAAGTACCGACACCCTTGCCTCC
CGCTGTACCGGAGGCGCCTTGCCGCCCTGGCGCACGGGGAGAAGCCTCCG
CCGATCTCGAGGGAAGCCCTGGAACAGGCGAGAGCGGGGGGGAGGGGGGG
GGGGNNN
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