EsuBft2491_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2491_3a-0001
Unique Name	EsuBft2491_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:633328..636538 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2491_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	243
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_3a	EsuBft2491_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 633328..636538 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_3a-0001-exon	EsuBft2491_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 633328..633564 -
EsuBft2491_3a-0001-exon	agat-exon-62403	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 634339..636538 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_3a-0001-exon	agat-three_prime_utr-10058	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 633328..633564 -
EsuBft2491_3a-0001-exon	agat-three_prime_utr-10059	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 634339..634834 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_3a-0001-cds	EsuBft2491_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 634835..636538 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2491_3a-0001	EsuBft2491_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 634835..636538 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:633328..636538-
coding sequence from alignment at Scaffold_195:633328..636538-

spliced messenger RNA

>EsuBft2491_3a-0001 ID=EsuBft2491_3a-0001|Name=EsuBft2491_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2437bp|location=Sequence derived from alignment at Scaffold_195:633328..636538- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTTGGGACGACACAGCGGCGAAATAGGGGGTTCAGACCCCCAAGA
GTTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGTTTTTCTTCGTG
GCTAGAGGATTTTTTTATGGCAGCGAACACAGCAAACCTTCTTGAGCTTT
TCAACGAGGGGGGGGCGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCGACAACCAGGCCTTCTG
CGCGGCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGGTCTAG
TGGGGGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTGATACA
GCAGCCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAACTACCG
CTAATGTAGTGGTTGGGTCAAGGGGATCGGAGGCAACAAGGCCCCCGTTC
CTCTCCTAGGGTACGGAGACGTGACCGTAGCCTTTCTGACCGAAGGCGGT
AGGGTACCAGTGCTAATCCTGAACGCCGCTCATGTGCCCGAGTCCCCCCA
CAACCTTCTCTCACTGTCGGCGTTGGCCGAGGAAGGCCACACGTATTCCG
GCCAGAAGGGGGGGCTGACTCTCACTACGAGAGCCGGGGGGCAGGTGTGG
TTCCCCCGGACGGGTAAGCTGCTAACTCAAGAAGGCTATCAAATCGAGCC
GAAGGTAGACATCGCCTGTGCCGCAACAATTGTTCCCGGCGATGCGAAAA
CAGCCACCCCCACTGGCCTCAACTACTACCACAATTCGCACGGCCACACA
CGCACGAGGAACTGCTCTAGAAACGGCGAAACAGCAAGGAGTGCAGCTGA
CGGGAGGACCGCTGCTACCATGCCTCGGCTGTTCGATGTCCAAGGGGCAG
CTGCTGCCTCTCGCAGACGACGAGGAGGGCGGGGAGGACGAGAGCAAGCA
GAGCACGTCCCGTCAAGGTGCGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft2491_3a-0001

>EsuBft2491_3 ID=EsuBft2491_3|Name=EsuBft2491_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=567bp
MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLA
ARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQYDGSAQAADLRRES
GPLGRHSGEIGGSDPQELRVAAAHNQACFSSAMGSGAAVFGSASVGYQSV
KYTAPTFSGDAKSFSSWLEDFFMAANTANLLELFNEGGAEIPVNSGQSKV
QLSRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXVDNQAFCAAPGLPGECGAVDLGLVGVTELGQDVMVYVADT
AATCSMFRCANAFVNYR

mRNA from alignment at Scaffold_195:633328..636538-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2491_3a-0001 ID=EsuBft2491_3a-0001|Name=EsuBft2491_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3211bp|location=Sequence derived from alignment at Scaffold_195:633328..636538- (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTTGGGACGACACAGCGGCGAAATAGGGGGTTCAGACCCCCAAGA
GTTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGTTTTTCTTCGTG
GCTAGAGGATTTTTTTATGGCAGCGAACACAGCAAACCTTCTTGAGCTTT
TCAACGAGGGGGGGGCGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCGACAACCAGGCCTTCTG
CGCGGCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGGTCTAG
TGGGGGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTGATACA
GCAGCCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAACTACCG
CTAATGTAGTGGTTGGGTCAAGGGGATCGGAGGCAACAAGGCCCCCGTTC
CTCTCCTAGGGTACGGAGACGTGACCGTAGCCTTTCTGACCGAAGGCGGT
AGGGTACCAGTGCTAATCCTGAACGCCGCTCATGTGCCCGAGTCCCCCCA
CAACCTTCTCTCACTGTCGGCGTTGGCCGAGGAAGGCCACACGTATTCCG
GCCAGAAGGGGGGGCTGACTCTCACTACGAGAGCCGGGGGGCAGGTGTGG
TTCCCCCGGACGGGTAAGCTGCTAACTCAAGAAGGCTATCAAATCGAGCC
GAAGGTAGACATCGCCTGTGCCGCAACAATTGTTCCCGGCGATGCGAAAA
CAGCCACCCCCACTGGCCTCAACTACTACCACAATTCGCACGGCCACACA
CGCACGAGGAACTGCTCTAGAAACGGCGAAACAGCAAGGAGTGCAGCTGA
CGGGAGGACCGCTGCTACCATGCCTCGGCTGTTCGATGTCCAAGGGGCAG
GTGAAGCCCATTTCAAAGAGCACGGACACACGCGCAGCTAAGAAATTGTT
CCGCCTCTTTCTCGATTTGGGGGGGAGGATGCAGTTCAAAAGCATTGGTG
GCAACTGGTACACCCTCATCATCCGAGATGATTGCATCCGCTGGACACGT
GTTTTCTTTCTGGAGCACAAGTCTGACGCCGCTTCCGCGTTCGAGCGATA
TCTGGCGGACTACAGAGCAGAAACCGTCCCGTGTGAGGTGTTTGTCGCAC
GTACTGACGGCGGCGGAGAATTCCAGGGCCAGTTTGCGGAGGTCTGCTGT
AGATACGGCATCAAGCAAGAATTCACGCCCCCCAACACCCCCAAGTACAA
CGGTGTAGCGGAACGAGCGTTGGGGTTGCCTGCTGATTCTGCGCTTGCCT
CCCGCATCCAAGCGAAAGAGATGTTCCCCGACGCGCCATTCAGCCCCGGC
TTGTGGGCCGAGGCCATTTCTTGTGCGTGCCACCAGATGAACTGCACCGC
CACTACCGGCAACCCTGGACACAAATCACCGTACGAGCTGTTCCACGGTA
CGCCGCCGGCGGTCGGGTCTACACACCCGTTCCTCAAACCTCTCGTGTTC
AAATCGAGAAGAAAGGCATAGTCGCAACCCAAGGGCGCGAAAGGATGGTA
CCTTGGGCCTGCCCACAATCACCCCCGTGACTGCATCCGCTTGTTAACCG
AAGCTGGTACCGTGGTCACGTCCCGAAATTTCACCTGGCGTCACGTGCCC
GCCGCTTCGCCCGCTTCCCCGCAGCTGCTGCCTCTCGCAGACGACGAGGA
GGGCGGGGAGGACGAGAGCAAGCAGAGCACGTCCCGTCAAGGTGCGGGGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_195:633328..636538-

>EsuBft2491_3a-0001 ID=EsuBft2491_3a-0001|Name=EsuBft2491_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1704bp|location=Sequence derived from alignment at Scaffold_195:633328..636538- (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTTGGGACGACACAGCGGCGAAATAGGGGGTTCAGACCCCCAAGA
GTTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGTTTTTCTTCGTG
GCTAGAGGATTTTTTTATGGCAGCGAACACAGCAAACCTTCTTGAGCTTT
TCAACGAGGGGGGGGCGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCGACAACCAGGCCTTCTG
CGCGGCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGGTCTAG
TGGGGGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTGATACA
GCAGCCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAACTACCG
CTAA