EsuBft2487_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2487_7a-0001
Unique NameEsuBft2487_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:959941..961037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGQ1
ProteomeIdEsuBft2487_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE
Protein domainsG3DSA
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length79
Hectar predicted targeting categoryother localisation
Evalue2.55e-93
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionprotein kinase activity
COG categoryKLT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_7aEsuBft2487_7aEctocarpus subulatus male Bft15bgeneScaffold_242 959941..961037 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_7a-0001-exonEsuBft2487_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 959941..960441 +
EsuBft2487_7a-0001-exonagat-exon-83189Ectocarpus subulatus male Bft15bexonScaffold_242 960744..961037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_7a-0001-cdsEsuBft2487_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 959941..960441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_7a-0001EsuBft2487_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 959941..961037 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2487_7a-0001 ID=EsuBft2487_7a-0001|Name=EsuBft2487_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=795bp|location=Sequence derived from alignment at Scaffold_242:959941..961037+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGGAGGACGCTGCTTGCTCCCCTCACCGCAGCACCAATGGCGGA
CGTGGCGGTAGTTATTCTCCATGTGGTGGACGAGATCCGTAAGGTCGCCG
AAGGCACAAGAGAGAACGACCGACAAGCGCTGTTCAAGAGAGTATTGGCC
GTCCAGCCTCCGGTGCTCGCTGTCCGCGAGGGCACCAAACTGTCTTCGTC
CGAGGCCCTACGCCAGCTTTTGGCGACCGTGGAGAAAATACGAAACTTTT
TGGGGGGATATGCGCAAACGTCCAAGTTTAACCGCGCCCTGAAGCGGAAA
GCAAATGCGGATCAATTCACGCAACTCGGCGACATCCTCACCGAGGAGGT
GCAGGCGCTTCAACTGGACGTGGCCGTGGATGCATGGGCGAAAGAAGATG
CGTCGGACCGCCTAGCAGATCTCGACAACATGGTGGATACGATGGAGAGA
ATGGAGCGTAGCCGCACGGACAACCACGCAGAGGTCATGAGTGTCCTTCA
GGCACTACGAAATGACGAGCGGGCGGAGCTAACGGGGTGGGTCGAAATCG
ACTACAGCGAAGACCTGGATTTCGAGGGTAGCACCATCCTTGGGGCGGGG
GGGGTCGGTGAAGTGCGCACAGTAAAGTGGAATGGGGCAGACGTAGCGGT
GAAGCACCTCCTGGCGAGCGGCCTTCCGCGCGACTGTCCGCGCCTTACGT
CAGGAGATTTGCCTCCGCTCCAGTCTGCACTACGCGTTCGTGGCCTCGCT
ATATGCGGCTTCTACCGTACCCCCCCACCTCTGCTTGGTTGTTGA
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protein sequence of EsuBft2487_7a-0001

>EsuBft2487_7 ID=EsuBft2487_7|Name=EsuBft2487_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=264bp
MTGRTLLAPLTAAPMADVAVVILHVVDEIRKVAEGTRENDRQALFKRVLA
VQPPVLAVREGTKLSSSEALRQLLATVEKIRNFLGGYAQTSKFNRALKRK
ANADQFTQLGDILTEEVQALQLDVAVDAWAKEDASDRLADLDNMVDTMER
MERSRTDNHAEVMSVLQALRNDERAELTGWVEIDYSEDLDFEGSTILGAG
GVGEVRTVKWNGADVAVKHLLASGLPRDCPRLTSGDLPPLQSALRVRGLA
ICGFYRTPPPLLGC
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mRNA from alignment at Scaffold_242:959941..961037+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2487_7a-0001 ID=EsuBft2487_7a-0001|Name=EsuBft2487_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1097bp|location=Sequence derived from alignment at Scaffold_242:959941..961037+ (Ectocarpus subulatus male Bft15b)
ATGACAGGGAGGACGCTGCTTGCTCCCCTCACCGCAGCACCAATGGCGGA
CGTGGCGGTAGTTATTCTCCATGTGGTGGACGAGATCCGTAAGGTCGCCG
AAGGCACAAGAGAGAACGACCGACAAGCGCTGTTCAAGAGAGTATTGGCC
GTCCAGCCTCCGGTGCTCGCTGTCCGCGAGGGCACCAAACTGTCTTCGTC
CGAGGCCCTACGCCAGCTTTTGGCGACCGTGGAGAAAATACGAAACTTTT
TGGGGGGATATGCGCAAACGTCCAAGTTTAACCGCGCCCTGAAGCGGAAA
GCAAATGCGGATCAATTCACGCAACTCGGCGACATCCTCACCGAGGAGGT
GCAGGCGCTTCAACTGGACGTGGCCGTGGATGCATGGGCGAAAGAAGATG
CGTCGGACCGCCTAGCAGATCTCGACAACATGGTGGATACGATGGAGAGA
ATGGAGCGTAGCCGCACGGACAACCACGCAGAGGTCATGAGTGTCCTTCA
GGTAAGCATGGAAGGTGTTCGAATCTTGAGTCGTGCACGCATCTCAGCAG
CTGTATTGCAACCACCCTAGAGCAGATGGTTTCGCCACCTTCGCTCACTG
ATTTGACGATAACACGTATTCTTTCATCAGTCAGCGACAGAACTGTGTAA
CATTCACCTGGAACACGTGATGTTGGCGAAGATGAAGACATCAAAGAGCC
TTGGTGTTGCGTGCACCTCGGTACCTTCAACCTAGGCATGTACAGCGATC
ATCTGATACGTCTCCATCTTTCTTCTCGACATTCACCACTATCACTAAAA
TAGGCACTACGAAATGACGAGCGGGCGGAGCTAACGGGGTGGGTCGAAAT
CGACTACAGCGAAGACCTGGATTTCGAGGGTAGCACCATCCTTGGGGCGG
GGGGGGTCGGTGAAGTGCGCACAGTAAAGTGGAATGGGGCAGACGTAGCG
GTGAAGCACCTCCTGGCGAGCGGCCTTCCGCGCGACTGTCCGCGCCTTAC
GTCAGGAGATTTGCCTCCGCTCCAGTCTGCACTACGCGTTCGTGGCCTCG
CTATATGCGGCTTCTACCGTACCCCCCCACCTCTGCTTGGTTGTTGA
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Coding sequence (CDS) from alignment at Scaffold_242:959941..961037+

>EsuBft2487_7a-0001 ID=EsuBft2487_7a-0001|Name=EsuBft2487_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=795bp|location=Sequence derived from alignment at Scaffold_242:959941..961037+ (Ectocarpus subulatus male Bft15b)
ATGACAGGGAGGACGCTGCTTGCTCCCCTCACCGCAGCACCAATGGCGGA
CGTGGCGGTAGTTATTCTCCATGTGGTGGACGAGATCCGTAAGGTCGCCG
AAGGCACAAGAGAGAACGACCGACAAGCGCTGTTCAAGAGAGTATTGGCC
GTCCAGCCTCCGGTGCTCGCTGTCCGCGAGGGCACCAAACTGTCTTCGTC
CGAGGCCCTACGCCAGCTTTTGGCGACCGTGGAGAAAATACGAAACTTTT
TGGGGGGATATGCGCAAACGTCCAAGTTTAACCGCGCCCTGAAGCGGAAA
GCAAATGCGGATCAATTCACGCAACTCGGCGACATCCTCACCGAGGAGGT
GCAGGCGCTTCAACTGGACGTGGCCGTGGATGCATGGGCGAAAGAAGATG
CGTCGGACCGCCTAGCAGATCTCGACAACATGGTGGATACGATGGAGAGA
ATGGAGCGTAGCCGCACGGACAACCACGCAGAGGTCATGAGTGTCCTTCA
GGCACTACGAAATGACGAGCGGGCGGAGCTAACGGGGTGGGTCGAAATCG
ACTACAGCGAAGACCTGGATTTCGAGGGTAGCACCATCCTTGGGGCGGGG
GGGGTCGGTGAAGTGCGCACAGTAAAGTGGAATGGGGCAGACGTAGCGGT
GAAGCACCTCCTGGCGAGCGGCCTTCCGCGCGACTGTCCGCGCCTTACGT
CAGGAGATTTGCCTCCGCTCCAGTCTGCACTACGCGTTCGTGGCCTCGCT
ATATGCGGCTTCTACCGTACCCCCCCACCTCTGCTTGGTTGTTGA
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