EsuBft2487_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2487_5a-0001
Unique Name	EsuBft2487_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:962867..964855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LPW2
ProteomeId	EsuBft2487_5
Protein domains	IPR011990
Protein domains	PTHR19959
Protein domains	PF13374
Protein domains	IPR019734
Protein domains	SSF48452
Protein domains	PF13424
Owner	apollo_admin@sb-roscoff.fr
Note	kinesin light chain os:doryteuthis pealeii pe:2 sv:1 [Automatic annotation]
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	1298
Hectar predicted targeting category	other localisation
Evalue	3.59e-16
EggNOG OGs	COG0457@1\|root,KOG1840@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K10407
KEGG Pathway	ko05132,map05132
Description	determination of stomach left/right asymmetry
COG category	C
BRITE	ko00000,ko00001,ko03019,ko04812

Cross References

External references for this mRNA


Database	Accession
GO	0031227
GO	0051656
GO	0051649
GO	0051704
GO	0044463
GO	0043231
GO	0005871
GO	0003774
GO	0032989
GO	0007018
GO	0006996
GO	0016020
GO	0048468
GO	0007275
GO	1903046
GO	0044765
GO	0043005
GO	0065007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2487_5a	EsuBft2487_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 962867..964855 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2487_5a-0001	EsuBft2487_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 962867..964325 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2487_5a-0001-exon	agat-exon-83185	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 962867..963115 +
EsuBft2487_5a-0001-exon	agat-exon-83184	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 963173..963256 +
EsuBft2487_5a-0001-exon	agat-exon-83182	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 963368..963480 +
EsuBft2487_5a-0001-exon	agat-exon-83183	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 963711..963894 +
EsuBft2487_5a-0001-exon	EsuBft2487_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 964188..964855 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2487_5a-0001-cds	EsuBft2487_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 962867..963115 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2487_5a-0001-exon	agat-three_prime_utr-10015	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 964326..964855 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:962867..964855+
coding sequence from alignment at Scaffold_242:962867..964855+

spliced messenger RNA

>EsuBft2487_5a-0001 ID=EsuBft2487_5a-0001|Name=EsuBft2487_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1298bp|location=Sequence derived from alignment at Scaffold_242:962867..964855+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGACCGTGTTTCAGGGCAAGTACGAGGAAGCCGACCCTCTCTA
TCTGCGAGCTGTTGAGATTGGGGAGAAGACTCTAGGCCCTGACCACCCAA
CTCTTGCCGTGTGGCTGAACAACAAAGCTGCAACCGGAGTTTCTTGTGGT
GTTAAATTGATATCGCAGTTGCTGGGCGGGGTTGTTGAGAAAATGTTTCT
CCGCGATCTCATTTTCGATTCTCAAACTGAAATACGACTTTACCACGCTG
CGATAAAAGAGAAGGTTCTTGGCCCTGACCACCCAAGTCTAGCGACGACG
CTCAACAACAGGGCGGGGTTGTTGGAAGCACAGGGGAAGTATGTCGAAGC
AGAGCCACTCTATGAGCGGTCGCAAGCCATACGAGAGAAGTCCGTGGGTC
CAGAGCACCCTGATGTGGCCCAGTCGCTCGACAACCGGGCGGCGGGTTTC
TTTCACCACACTCGCATGGCGTTTTCTAACGTGACATGGACTGTCCGCTT
CCGGGGGAAGTATGCGGAGGCAGACCCTCTTTATCTACGAGCTATTGAGA
TCGGAGAGAAAATGCTCGGCCCCGACCACCCAGATCTCGCAACAAGGCTC
AACAACCGGGCGTGGTTGTTACACAGTCAGGGCAAGCACAACGAGGCGAT
TCCACGACTAGAGAGGGCATCCTCCATCCGAAGAAAGAGGCTGGGGGAGG
GTCACCATTCCACAGCCGACATTCAGGTCGCGCTAGAGCGTGTTCGAAAA
CATGTTCGTGATTCGTGAAGAGACTAACTAGTCGCGAGGGTACACTGCAC
CTCGAGGAAGCCTGGCACCCAAGAAAATGCTTCGTTTCGTGTTGTGACGG
GCAGAGTGAGCACCAGATCGAAGGGCGCTGCCTGTGACAGTGCTCATTCA
AAAACTCGACGAAAAACAGGGGCAAGCTCCTGTGCTACAGGACGTAGATA
TACCATTGTTTTATGGTTATCTGGTATTGATTGGTGGTGGTCGCGCTTTG
GCTGATGCTGGTAAAGCAATTGGTCATTGGCTCTCCGTTGTATCTCCATC
GGCCTGTTCTTGAAATGCGTGGGCGATGTGTCTCGTAGTCACGAGGTAAA
AATGCTTTGAATTGAAGCCACATGTTGACCATGTATCCAGATGCACATAC
ACCAAATGAATCCGATTCATGGTAAGATTTCATCATGGAGCGCTCAGTGG
CGGCTCAAGTTTCGTAAGCTTGGCGGAGCAGTAAACCACAAGCAATTTGC
GATAGTCCAAAAAGCGATGGCGTTGTATCGCGGCATATACTGTTAGAC

protein sequence of EsuBft2487_5a-0001

>EsuBft2487_5 ID=EsuBft2487_5|Name=EsuBft2487_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=255bp
MPSTVFQGKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKAATGVSCG
VKLISQLLGGVVEKMFLRDLIFDSQTEIRLYHAAIKEKVLGPDHPSLATT
LNNRAGLLEAQGKYVEAEPLYERSQAIREKSVGPEHPDVAQSLDNRAAGF
FHHTRMAFSNVTWTVRFRGKYAEADPLYLRAIEIGEKMLGPDHPDLATRL
NNRAWLLHSQGKHNEAIPRLERASSIRRKRLGEGHHSTADIQVALERVRK
HVRDS

mRNA from alignment at Scaffold_242:962867..964855+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2487_5a-0001 ID=EsuBft2487_5a-0001|Name=EsuBft2487_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1989bp|location=Sequence derived from alignment at Scaffold_242:962867..964855+ (Ectocarpus subulatus male Bft15b)
ATGCCGTCGACCGTGTTTCAGGGCAAGTACGAGGAAGCCGACCCTCTCTA
TCTGCGAGCTGTTGAGATTGGGGAGAAGACTCTAGGCCCTGACCACCCAA
CTCTTGCCGTGTGGCTGAACAACAAAGCTGCAACCGGAGTTTCTTGTGGT
GTTAAATTGATATCGCAGTTGCTGGGCGGGGTTGTTGAGAAAATGTTTCT
CCGCGATCTCATTTTCGATTCTCAAACTGAAATACGACTTTACCACGCTG
TCCACTGCATCCAGGGCTAACACTCGGAGGCTGAGCCCCTTTATGAGCGG
TGTCAGGCGATAAAAGAGAAGGTTCTTGGCCCTGACCACCCAAGTCTAGC
GACGACGCTCAACAACAGGGCGGGGTTGTTGGAAGCACAGGTGAGAGCCA
GTGAATGCTTCTAGAAGGATCTAGAAGCACATTTTGGTCTGCAGTTCTAG
ATCCGACTTGTACTAAAGTGTGACCTTGCCCCGCTGTCGACTGCGTTCCA
GGGGAAGTATGTCGAAGCAGAGCCACTCTATGAGCGGTCGCAAGCCATAC
GAGAGAAGTCCGTGGGTCCAGAGCACCCTGATGTGGCCCAGTCGCTCGAC
AACCGGGCGGCGGGGTTGGTGAGAAATGTTCCTCCGCCGTTGTAGAACAG
TCTCTAATTACACGTTTACTTTCGCTGTCAACCACTGCATCCATGGCACG
CACACCGACGCTGAGCCGCTCTACGAGCGGTGTCAGGCGATATTTGTAAA
GAGTCTCGGTCCTGAGATCCCAATGTGGCCACAACGCTCAACAACCAGGC
GCGGTTGTTGAGAAATGTTCCTCCGGAATAACCTCAACTTATAGTTTCTT
TCACCACACTCGCATGGCGTTTTCTAACGTGACATGGACTGTCCGCTTCC
GGGGGAAGTATGCGGAGGCAGACCCTCTTTATCTACGAGCTATTGAGATC
GGAGAGAAAATGCTCGGCCCCGACCACCCAGATCTCGCAACAAGGCTCAA
CAACCGGGCGTGGTTGTTACACAGTCAGGTACGAGCCGTGAGATTTTTCC
AGTAATAAATCTTGGGAATTTCCCATAAATGTCACCACCTTTTACATAAT
CTGTTCGTGATAACCCTTACCATGTCGATTCTTACGTGTCTATGAGCTTT
GTTGCGCAGTCTCGCTCAACTTCTCCGCTGTTCCATCGCATTGCTGCTTG
TACCGGGTGAAGGAATCGATATTTTAATCTTTTGCGTCAAGTCTCGTTTT
ACATACTCCGCATTACACATGGTGTTGCGCATTGGATTGAATGCGCAACC
TCGGATCTCAAATGTCCTCAGGGCAAGCACAACGAGGCGATTCCACGACT
AGAGAGGGCATCCTCCATCCGAAGAAAGAGGCTGGGGGAGGGTCACCATT
CCACAGCCGACATTCAGGTCGCGCTAGAGCGTGTTCGAAAACATGTTCGT
GATTCGTGAAGAGACTAACTAGTCGCGAGGGTACACTGCACCTCGAGGAA
GCCTGGCACCCAAGAAAATGCTTCGTTTCGTGTTGTGACGGGCAGAGTGA
GCACCAGATCGAAGGGCGCTGCCTGTGACAGTGCTCATTCAAAAACTCGA
CGAAAAACAGGGGCAAGCTCCTGTGCTACAGGACGTAGATATACCATTGT
TTTATGGTTATCTGGTATTGATTGGTGGTGGTCGCGCTTTGGCTGATGCT
GGTAAAGCAATTGGTCATTGGCTCTCCGTTGTATCTCCATCGGCCTGTTC
TTGAAATGCGTGGGCGATGTGTCTCGTAGTCACGAGGTAAAAATGCTTTG
AATTGAAGCCACATGTTGACCATGTATCCAGATGCACATACACCAAATGA
ATCCGATTCATGGTAAGATTTCATCATGGAGCGCTCAGTGGCGGCTCAAG
TTTCGTAAGCTTGGCGGAGCAGTAAACCACAAGCAATTTGCGATAGTCCA
AAAAGCGATGGCGTTGTATCGCGGCATATACTGTTAGAC

Coding sequence (CDS) from alignment at Scaffold_242:962867..964855+

>EsuBft2487_5a-0001 ID=EsuBft2487_5a-0001|Name=EsuBft2487_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=768bp|location=Sequence derived from alignment at Scaffold_242:962867..964855+ (Ectocarpus subulatus male Bft15b)
ATGCCGTCGACCGTGTTTCAGGGCAAGTACGAGGAAGCCGACCCTCTCTA
TCTGCGAGCTGTTGAGATTGGGGAGAAGACTCTAGGCCCTGACCACCCAA
CTCTTGCCGTGTGGCTGAACAACAAAGCTGCAACCGGAGTTTCTTGTGGT
GTTAAATTGATATCGCAGTTGCTGGGCGGGGTTGTTGAGAAAATGTTTCT
CCGCGATCTCATTTTCGATTCTCAAACTGAAATACGACTTTACCACGCTG
CGATAAAAGAGAAGGTTCTTGGCCCTGACCACCCAAGTCTAGCGACGACG
CTCAACAACAGGGCGGGGTTGTTGGAAGCACAGGGGAAGTATGTCGAAGC
AGAGCCACTCTATGAGCGGTCGCAAGCCATACGAGAGAAGTCCGTGGGTC
CAGAGCACCCTGATGTGGCCCAGTCGCTCGACAACCGGGCGGCGGGTTTC
TTTCACCACACTCGCATGGCGTTTTCTAACGTGACATGGACTGTCCGCTT
CCGGGGGAAGTATGCGGAGGCAGACCCTCTTTATCTACGAGCTATTGAGA
TCGGAGAGAAAATGCTCGGCCCCGACCACCCAGATCTCGCAACAAGGCTC
AACAACCGGGCGTGGTTGTTACACAGTCAGGGCAAGCACAACGAGGCGAT
TCCACGACTAGAGAGGGCATCCTCCATCCGAAGAAAGAGGCTGGGGGAGG
GTCACCATTCCACAGCCGACATTCAGGTCGCGCTAGAGCGTGTTCGAAAA
CATGTTCGTGATTCGTGA