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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 164328.Phyra85518 |
| ProteomeId | EsuBft2487_4 |
| Protein domains | IPR013103 |
| Protein domains | SSF56672 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2484 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.67e-79 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | GAG-pre-integrase domain |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0044424 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2487_4a-0001 ID=EsuBft2487_4a-0001|Name=EsuBft2487_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2484bp|location=Sequence derived from alignment at Scaffold_242:972439..979025+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGATGCTAACGCCCACGGCGACCGCCAGCCCAACAATTTTCAGTCTAC AGGATGGGGTCACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTGG CGCAGATCGTCCATGCCGACAGCGACGCCGACTCCGTCGACAACCAGGCC TTCTGCGCGGCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGG TCTAGTGGGGGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTG ATACAGCAGCCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAAC TACCGCGAGTGTAGTGGTTGGGTCAAGGGGATCGGAGGCAACAAGGCCCC CGTTCCTCTCCTAGGGTACGGAGACGTGACCGTAGTCTTTTTGACCGAAG GCGGTAGGGTACCAGTGCTAATCATGAACGCCGCTCATGTGCCCGAGTCC CCCCGCAACCTTCTCTCACTGTCGGCGTTGGCCGAGGAAGGCCACACGTA TTCCGGCCAGAAGGGGGGGCTGACTCTCACTACGAGAGCCGGGGGGAAGG TGTGGTTCCCCCGGACGGGGCGTCGGCTCCTCTGGGGCGCCTCGAAGGAA GGACCGCTGCGCCACGGGCTCGAGCGCGGCCGCACACGAAGGGAGACCCG GGAGCTGCAAGGCCCCGAGGAGCCGCCGGGTCCAGACGCCGAGCCAGACG CCGAGCAAGCGCTGCTGGCGGAGATCATCGTGGACTACGTTTCCAACTCG CTGGTGCCGGAGCGGTACGACGAGGAGCAGGTCAACATCGAGTACCGGCG TGAGATGCATGAGCTGCCGTATGGCACCGAGCTGCAGGAAGAGGCGTTCG GTGCAGAGGCAGGGGACAACGGGTCATCGCAACCTCTTCATGACCCGCAG CTAAGTATCCCCTCGCCCTTCGGCCAGAAGCCAAGTGATGTAGAGTGCGT GCCCTTGACGTACAAGGATGTCCTTAACTCCAAGTACAAGGTGCTGTGGG AAGCAGCCATAGCAAAGGAGTTCGACGGCCACAAGAAGACGGGGACGTTC TCCGAGATTAGCGGTCTGCCCGAGGGGCGTAAGGCCATCAGTGCGAAGTG GATTTTCTCGCACAAGACCAATGAGAAGGGGCTGATTGTTGACTTCAAAG CACGTATGGTTGCGCGTGGTTTTTCTCAGATTCCCGGTGTGGATTTTCAC CACTCATCATCCGCATGCCCTTCCGCGGTGTCCATCAAAACTATGGTGGC CGTATCCACCGAGAATGGTAGGAGGCCTGTCCACTGGGACATTAAGCAGG CGTACACACACGCCAAGCTGAAGGAAGAAATCTACCTGAGGCTTCCAGAC GGTTGTGGTGTTTGGACTGGCAAGGCGGTGAAAGTCGAGCGTGCTCTGTA TGGACTCAAGCAGAGTGGGCGCGAGTGGGGGTTTGAGGCTGCCGATGCCC TGATCTCAAACGGCTACGAGCAGTGCAGGGTGGACCCCTGCATTTTCCGC AAGGTGGTTGACGGAGAAGTCGTAGGTCTCATTGTGATCTACGTGGATGA CATCATGTTGTGCGCGACCGAGGAGGAGCGTGAAGAGTTGCTAGCGTCTC TCCAGAAGGGATTCCCTGTGAAGGATCTAGGAGATTGCACCTGGTACGAT GGGTGTGCCATTGAGGTGGACCTTGAGAATGGTACCACCAAGCTGTCCCA GACGGCTTATATCGAGAGCATGCTCAACCGCTTCAATGTCACGACCACTG CTCCCACGCCCGCTGTCGTCGACGATGACCTAGGGCCGAAGAGAGACGAC GAGTCCTCGGTGGACAAGCCCGTGAGGGAAGCGATCGGATGCCTGATGTG GTTGCTGTTCACGAGGCCGGACATCGCGCTGCCTTTGAACAAGCTGCAGA AGATCGCCCACTCACCCACCGAGAGGATGTGGAACGCGCTTGTGCGGATC ATGTCCTACCTCAACGAGACGAAGGACCTCGGGATCACCTACGTCCGCGG ATCAGGGCTAGACCTAGACGTGTTCGTCGATTCTAGTTACGCCGACAGCA CCGTTGACAGGCGTTCGACGACGGGGCTAGCCGTGACTGTAGGTGGGACC GTAGTGTGCGCATTCATGAAGACACAGCCAGTGACGGCTCAGTCGACCAC GGAGGCAGAGTATGTTGCAGCCGGGGAGGGCGTGAAGGAAGCGTTGTTCG TGCGTGGTGTTCTGTCGTTCATTGCGCCCGAGACGAGCGGTGCCACGATC AGGGTCCGTGAGGACAACGAGGGGGCTCTCGCGTTGGTGCAGAACCCTTT CAGCTCGGCGAGGAGCAAGCATATCGACGTGCGGTTCCACTTCATCCGCG AGCTCTTCAAGGTGGGCAAGATCACCGCAGATTATGTCTCGACAGAAGAG CAGCACGCCGATATGCTGACCAAGGTCCTTGGTAGGGGCAAGTTGGAGTA CCACCGGAAGGCTCTGATGAACCTGCCGATGTAG back to topprotein sequence of EsuBft2487_4a-0001 >EsuBft2487_4 ID=EsuBft2487_4|Name=EsuBft2487_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=827bp
MDANAHGDRQPNNFQSTGWGHSKDKCATEEAVLAQIVHADSDADSVDNQA FCAAPGLPGECGAVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVN YRECSGWVKGIGGNKAPVPLLGYGDVTVVFLTEGGRVPVLIMNAAHVPES PRNLLSLSALAEEGHTYSGQKGGLTLTTRAGGKVWFPRTGRRLLWGASKE GPLRHGLERGRTRRETRELQGPEEPPGPDAEPDAEQALLAEIIVDYVSNS LVPERYDEEQVNIEYRREMHELPYGTELQEEAFGAEAGDNGSSQPLHDPQ LSIPSPFGQKPSDVECVPLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTF SEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFH HSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPD GCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFR KVVDGEVVGLIVIYVDDIMLCATEEEREELLASLQKGFPVKDLGDCTWYD GCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDD ESSVDKPVREAIGCLMWLLFTRPDIALPLNKLQKIAHSPTERMWNALVRI MSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGT VVCAFMKTQPVTAQSTTEAEYVAAGEGVKEALFVRGVLSFIAPETSGATI RVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKVGKITADYVSTEE QHADMLTKVLGRGKLEYHRKALMNLPM back to topmRNA from alignment at Scaffold_242:972439..979025+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2487_4a-0001 ID=EsuBft2487_4a-0001|Name=EsuBft2487_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6587bp|location=Sequence derived from alignment at Scaffold_242:972439..979025+ (Ectocarpus subulatus male Bft15b) ATGGATGCTAACGCCCACGGCGACCGCCAGCCCAACAATTTTCAGGTAAA
ACCGGCCTCGGTCCCACTTGGGCCACCGAATGTAGTCTACAGGTGAGCAA
AGTAGGGAGAAGAACACTTTTTTCTTCGCGAACACCGGGTAGGGAGTTGA
TCAGCCCTACCACACACCCAACAGAAACACAGGAAACACAACAGGTAGAG
ATGGCGCGGGCTGCAGAGACCGAAGTGAAAAGTGGAATGAGAGTTTGGTT
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AGCGACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGGTCACAGCAA
GGACAAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCGTCCATGCCG
ACAGCGACGCCGACTCCGTCGACAACCAGGCCTTCTGCGCGGCGCCGGGC
CTGCCAGGCGAGTGTGGTGCTGTTGACCTAGGTCTAGTGGGGGTAACGGA
ACTAGGCCAGGATGTCATGGTGTACGTGGCTGATACAGCAGCCACGTGCT
CCATGTTCCGATGCGCAAACGCGTTCGTGAACTACCGCGAGTGTAGTGGT
TGGGTCAAGGGGATCGGAGGCAACAAGGCCCCCGTTCCTCTCCTAGGGTA
CGGAGACGTGACCGTAGTCTTTTTGACCGAAGGCGGTAGGGTACCAGTGC
TAATCATGAACGCCGCTCATGTGCCCGAGTCCCCCCGCAACCTTCTCTCA
CTGTCGGCGTTGGCCGAGGAAGGCCACACGTATTCCGGCCAGAAGGGGGG
GCTGACTCTCACTACGAGAGCCGGGGGGAAGGTGTGGTTCCCCCGGACGG
GTAAGCTGCTAACTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCGAGCGACGCTGCCG
GTGCAAGAGAAGGCGCCGGCGGCACCCGGCAACGGGACCGGGGACGCTGG
TTCGGGCGTCCCTCTGTCGCATCCTTCGGGAGGAGGCGACTTCGATGGAA
GTAGCAGCGGCAGCAGCAGTAGCAGCGACCNTTTGATCCCGCCGACAGCC
GCTACCCGCCGGGCCGCGAAGGGCGTCGGCTCCTCTGGGGCGCCTCGAAG
GAAGGACCGCTGCGCCACGGGCTCGAGCGCGGCCGCACACGAAGGGAGAC
CCGGGAGCTGCAAGGCCCCGAGGAGCCGCCGGGTCCAGACGCCGAGCCAG
ACGCCGAGCAAGCGCTGCTGGCGGAGATCATCGTGGACTACGTTTCCAAC
TCGCTGGTGCCGGAGCGGTACGACGAGGAGCAGGTCAACATCGAGTACCG
GCGTGAGATGCATGAGCTGCCGTATGGCACCGAGCTGCAGGAAGAGGCGT
TCGGTGCAGAGGCAGGGGACAACGGGTCATCGCAACCTCTTCATGACCCG
CAGCTAAGTATCCCCTCGCCCTTCGGCCAGAAGCCAAGTGATGTAGAGTG
CGTGCCCTTGACGTACAAGGATGTCCTTAACTCCAAGTACAAGGTGCTGT
GGGAAGCAGCCATAGCAAAGGAGTTCGACGGCCACAAGAAGACGGGGACG
TTCTCCGAGATTAGCGGTCTGCCCGAGGGGCGTAAGGCCATCAGTGCGAA
GTGGATTTTCTCGCACAAGACCAATGAGAAGGGGCTGATTGTTGACTTCA
AAGCACGTATGGTTGCGCGTGGTTTTTCTCAGATTCCCGGTGTGGATTTT
CACCACTCATCATCCGCATGCCCTTCCGCGGTGTCCATCAAAACTATGGT
GGCCGTATCCACCGAGAATGGTAGGAGGCCTGTCCACTGGGACATTAAGC
AGGCGTACACACACGCCAAGCTGAAGGAAGAAATCTACCTGAGGCTTCCA
GACGGTTGTGGTGTTTGGACTGGCAAGGCGGTGAAAGTCGAGCGTGCTCT
GTATGGACTCAAGCAGAGTGGGCGCGAGTGGGGGTTTGAGGCTGCCGATG
CCCTGATCTCAAACGGCTACGAGCAGTGCAGGGTGGACCCCTGCATTTTC
CGCAAGGTGGTTGACGGAGAAGTCGTAGGTCTCATTGTGATCTACGTGGA
TGACATCATGTTGTGCGCGACCGAGGAGGAGCGTGAAGAGTTGCTAGCGT
CTCTCCAGAAGGGATTCCCTGTGAAGGATCTAGGAGATTGCACCTGGTAC
GATGGGTGTGCCATTGAGGTGGACCTTGAGAATGGTACCACCAAGCTGTC
CCAGACGGCTTATATCGAGAGCATGCTCAACCGCTTCAATGTCACGACCA
CTGCTCCCACGCCCGCTGTCGTCGACGATGACCTAGGGCCGAAGAGAGAC
GACGAGTCCTCGGTGGACAAGCCCGTGAGGGAAGCGATCGGATGCCTGAT
GTGGTTGCTGTTCACGAGGCCGGACATCGCGCTGCCTTTGAACAAGCTGC
AGAAGATCGCCCACTCACCCACCGAGAGGATGTGGAACGCGCTTGTGCGG
ATCATGTCCTACCTCAACGAGACGAAGGACCTCGGGATCACCTACGTCCG
CGGATCAGGGCTAGACCTAGACGTGTTCGTCGATTCTAGTTACGCCGACA
GCACCGTTGACAGGCGTTCGACGACGGGGCTAGCCGTGACTGTAGGTGGG
ACCGTAGTGTGCGCATTCATGAAGACACAGCCAGTGACGGCTCAGTCGAC
CACGGAGGCAGAGTATGTTGCAGCCGGGGAGGGCGTGAAGGAAGCGTTGT
TCGTGCGTGGTGTTCTGTCGTTCATTGCGCCCGAGACGAGCGGTGCCACG
ATCAGGGTCCGTGAGGACAACGAGGGGGCTCTCGCGTTGGTGCAGAACCC
TTTCAGCTCGGCGAGGAGCAAGCATATCGACGTGCGGTTCCACTTCATCC
GCGAGCTCTTCAAGGTGGGCAAGATCACCGCAGATTATGTCTCGACAGAA
GAGCAGCACGCCGATATGCTGACCAAGGTCCTTGGTAGGGGCAAGTTGGA
GTACCACCGGAAGGCTCTGATGAACCTGCCGATGTAG back to topCoding sequence (CDS) from alignment at Scaffold_242:972439..979025+ >EsuBft2487_4a-0001 ID=EsuBft2487_4a-0001|Name=EsuBft2487_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2484bp|location=Sequence derived from alignment at Scaffold_242:972439..979025+ (Ectocarpus subulatus male Bft15b) ATGGATGCTAACGCCCACGGCGACCGCCAGCCCAACAATTTTCAGTCTAC AGGATGGGGTCACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTGG CGCAGATCGTCCATGCCGACAGCGACGCCGACTCCGTCGACAACCAGGCC TTCTGCGCGGCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGG TCTAGTGGGGGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTG ATACAGCAGCCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAAC TACCGCGAGTGTAGTGGTTGGGTCAAGGGGATCGGAGGCAACAAGGCCCC CGTTCCTCTCCTAGGGTACGGAGACGTGACCGTAGTCTTTTTGACCGAAG GCGGTAGGGTACCAGTGCTAATCATGAACGCCGCTCATGTGCCCGAGTCC CCCCGCAACCTTCTCTCACTGTCGGCGTTGGCCGAGGAAGGCCACACGTA TTCCGGCCAGAAGGGGGGGCTGACTCTCACTACGAGAGCCGGGGGGAAGG TGTGGTTCCCCCGGACGGGGCGTCGGCTCCTCTGGGGCGCCTCGAAGGAA GGACCGCTGCGCCACGGGCTCGAGCGCGGCCGCACACGAAGGGAGACCCG GGAGCTGCAAGGCCCCGAGGAGCCGCCGGGTCCAGACGCCGAGCCAGACG CCGAGCAAGCGCTGCTGGCGGAGATCATCGTGGACTACGTTTCCAACTCG CTGGTGCCGGAGCGGTACGACGAGGAGCAGGTCAACATCGAGTACCGGCG TGAGATGCATGAGCTGCCGTATGGCACCGAGCTGCAGGAAGAGGCGTTCG GTGCAGAGGCAGGGGACAACGGGTCATCGCAACCTCTTCATGACCCGCAG CTAAGTATCCCCTCGCCCTTCGGCCAGAAGCCAAGTGATGTAGAGTGCGT GCCCTTGACGTACAAGGATGTCCTTAACTCCAAGTACAAGGTGCTGTGGG AAGCAGCCATAGCAAAGGAGTTCGACGGCCACAAGAAGACGGGGACGTTC TCCGAGATTAGCGGTCTGCCCGAGGGGCGTAAGGCCATCAGTGCGAAGTG GATTTTCTCGCACAAGACCAATGAGAAGGGGCTGATTGTTGACTTCAAAG CACGTATGGTTGCGCGTGGTTTTTCTCAGATTCCCGGTGTGGATTTTCAC CACTCATCATCCGCATGCCCTTCCGCGGTGTCCATCAAAACTATGGTGGC CGTATCCACCGAGAATGGTAGGAGGCCTGTCCACTGGGACATTAAGCAGG CGTACACACACGCCAAGCTGAAGGAAGAAATCTACCTGAGGCTTCCAGAC GGTTGTGGTGTTTGGACTGGCAAGGCGGTGAAAGTCGAGCGTGCTCTGTA TGGACTCAAGCAGAGTGGGCGCGAGTGGGGGTTTGAGGCTGCCGATGCCC TGATCTCAAACGGCTACGAGCAGTGCAGGGTGGACCCCTGCATTTTCCGC AAGGTGGTTGACGGAGAAGTCGTAGGTCTCATTGTGATCTACGTGGATGA CATCATGTTGTGCGCGACCGAGGAGGAGCGTGAAGAGTTGCTAGCGTCTC TCCAGAAGGGATTCCCTGTGAAGGATCTAGGAGATTGCACCTGGTACGAT GGGTGTGCCATTGAGGTGGACCTTGAGAATGGTACCACCAAGCTGTCCCA GACGGCTTATATCGAGAGCATGCTCAACCGCTTCAATGTCACGACCACTG CTCCCACGCCCGCTGTCGTCGACGATGACCTAGGGCCGAAGAGAGACGAC GAGTCCTCGGTGGACAAGCCCGTGAGGGAAGCGATCGGATGCCTGATGTG GTTGCTGTTCACGAGGCCGGACATCGCGCTGCCTTTGAACAAGCTGCAGA AGATCGCCCACTCACCCACCGAGAGGATGTGGAACGCGCTTGTGCGGATC ATGTCCTACCTCAACGAGACGAAGGACCTCGGGATCACCTACGTCCGCGG ATCAGGGCTAGACCTAGACGTGTTCGTCGATTCTAGTTACGCCGACAGCA CCGTTGACAGGCGTTCGACGACGGGGCTAGCCGTGACTGTAGGTGGGACC GTAGTGTGCGCATTCATGAAGACACAGCCAGTGACGGCTCAGTCGACCAC GGAGGCAGAGTATGTTGCAGCCGGGGAGGGCGTGAAGGAAGCGTTGTTCG TGCGTGGTGTTCTGTCGTTCATTGCGCCCGAGACGAGCGGTGCCACGATC AGGGTCCGTGAGGACAACGAGGGGGCTCTCGCGTTGGTGCAGAACCCTTT CAGCTCGGCGAGGAGCAAGCATATCGACGTGCGGTTCCACTTCATCCGCG AGCTCTTCAAGGTGGGCAAGATCACCGCAGATTATGTCTCGACAGAAGAG CAGCACGCCGATATGCTGACCAAGGTCCTTGGTAGGGGCAAGTTGGAGTA CCACCGGAAGGCTCTGATGAACCTGCCGATGTAG back to top
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