EsuBft2487_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2487_3a-0001
Unique NameEsuBft2487_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:982543..983853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2487_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length87
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_3aEsuBft2487_3aEctocarpus subulatus male Bft15bgeneScaffold_242 982543..983853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_3a-0001EsuBft2487_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 982602..983853 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_3a-0001-exonagat-exon-83177Ectocarpus subulatus male Bft15bexonScaffold_242 982543..982861 +
EsuBft2487_3a-0001-exonEsuBft2487_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 982932..983076 +
EsuBft2487_3a-0001-exonagat-exon-83176Ectocarpus subulatus male Bft15bexonScaffold_242 983281..983460 +
EsuBft2487_3a-0001-exonagat-exon-83178Ectocarpus subulatus male Bft15bexonScaffold_242 983626..983853 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_3a-0001-exonagat-five_prime_utr-6420Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 982543..982601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2487_3a-0001-cdsEsuBft2487_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 982602..982861 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2487_3a-0001 ID=EsuBft2487_3a-0001|Name=EsuBft2487_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=872bp|location=Sequence derived from alignment at Scaffold_242:982543..983853+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCACGACAAGCACAAGCCTGGCGAAACGGGTGGAAGCCAACAAAGTTGGG
GTGGTGGAGATGGCACTGGACATGGACAAGACACCATGGACCACGAGAAG
GGCAGGAACGGTGGAACATGCGGCCCAGAGGAACCGCGTGGAGGAACCGG
CAAGGGTGTCGACGACGTGTCCGAGGGGGGCAAACGGCAGGCAACCAAGG
ACGGGCTTTCAACGGGTGCGCCGGCAGGGGACTGCGGCGGGGCAACGGAT
ATGGAGATCCGTGAACTACGAAGGAAATCTCATGGGTTTCAGCGGCTCGC
ACTCGCTCGAGAGGGGAGGGGAGGGCAGGAAGTCAGATGGGCAGAAAAGG
TCGGGGCGTGAAAAGGAAACAGCGAAGGGGAGCAGCAGGAAGGGCGGGCG
TTTTACCGACGATGAGGATCTGGACGGGAAATCGAGCGGAGGTCAACGAG
GCAACGACAAAAAGGTGGGCGACCCTGATGAAGACGAGGATGCCGACGAT
CTTGCCTCCGATTATGAAGAACTTGCCTCCGACTATGAAGACGACCACGA
TTATGAAGACGACCGCGATGACGAAGCCGACAGCGAAGACGACCGCGATG
ATGAAGACGACCAACAAGGCGGGATCAAGAAGGTGATCAAGAAGGAATGT
GCCAGGGGTAAGAGCAAGGGCAAAGGGGCGGATAGTGAAACGGACGAAGA
CACGGACGAGGAAACTGGGCTGTGGGGGGACGTAGATGGCGGAGGAATTG
CGCACCTTGGCCACGCATTCGACGTGAAGGAGTCAGCCTACGACACGTTG
GAGGCCACATTCATTCGCCACGGTCATCGGGGAGCTCGAAGAAGAAGGGC
ATCTAACCCTNCAAGAAGGTGA
back to top

protein sequence of EsuBft2487_3a-0001

>EsuBft2487_3 ID=EsuBft2487_3|Name=EsuBft2487_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=270bp
MALDMDKTPWTTRRAGTVEHAAQRNRVEEPARVSTTCPRGANGRQPRTGF
QRVRRQGTAAGQRIWRSVNYEGNLMGFSGSHSLERGGEGRKSDGQKRSGR
EKETAKGSSRKGGRFTDDEDLDGKSSGGQRGNDKKVGDPDEDEDADDLAS
DYEELASDYEDDHDYEDDRDDEADSEDDRDDEDDQQGGIKKVIKKECARG
KSKGKGADSETDEDTDEETGLWGDVDGGGIAHLGHAFDVKESAYDTLEAT
FIRHGHRGARRRRASNPXRR
back to top

mRNA from alignment at Scaffold_242:982543..983853+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2487_3a-0001 ID=EsuBft2487_3a-0001|Name=EsuBft2487_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1311bp|location=Sequence derived from alignment at Scaffold_242:982543..983853+ (Ectocarpus subulatus male Bft15b)
CCACGACAAGCACAAGCCTGGCGAAACGGGTGGAAGCCAACAAAGTTGGG
GTGGTGGAGATGGCACTGGACATGGACAAGACACCATGGACCACGAGAAG
GGCAGGAACGGTGGAACATGCGGCCCAGAGGAACCGCGTGGAGGAACCGG
CAAGGGTGTCGACGACGTGTCCGAGGGGGGCAAACGGCAGGCAACCAAGG
ACGGGCTTTCAACGGGTGCGCCGGCAGGGGACTGCGGCGGGGCAACGGAT
ATGGAGATCCGTGAACTACGAAGGAAATCTCATGGGTTTCAGCGGCTCGC
ACTCGCTCGAGAGGGGAGGGTGAGTGGAAGGTTCATCAGTGCCCCCCCGC
TACNGGAGTGGATGAGGGGTCGGAGCCCGGGGAGGGCAGGGAGGGCAGGA
AGTCAGATGGGCAGAAAAGGTCGGGGCGTGAAAAGGAAACAGCGAAGGGG
AGCAGCAGGAAGGGCGGGCGTTTTACCGACGATGAGGATCTGGACGGGAA
ATCGAGCGGAGGTCAACGAGGCAACGACAAAAAGGTGAGACAGGCTTGCC
ACGGTCACCAACTTTGACTGGCAAGTGATGGAGGCACATGGTAATGCCGC
TGCGATGCCGTATGATACACCCATTGTCATCCGAGCGCACTTGTTTCGAC
GCAAGGGGGAGGGGGAATGCTGTCGACTATTGTTGATGGCTTTGTGGTTG
TGTCCATTTCCCCGCTTTGTTGGTGTGCAGAGGAAAAGGTGGGCGACCCT
GATGAAGACGAGGATGCCGACGATCTTGCCTCCGATTATGAAGAACTTGC
CTCCGACTATGAAGACGACCACGATTATGAAGACGACCGCGATGACGAAG
CCGACAGCGAAGACGACCGCGATGATGAAGACGACCAACAAGGCGGGATC
AAGAAGGTGATCAAGAAGGTAAGCTGCGCTTGCGGCGGCCCGAACGCTTG
CACTCGGAATGGACTAGGCAATACCAGTCCCGGCAACGTATTTGGTCGAC
TTGAGGTCTCTGAGCTTCGTCTGAGCTTGTGATTGGACTGCGCAATCTCG
CGGCCCTTTGATGCGTGGTGTATGCGGGAGCAGGAATGTGCCAGGGGTAA
GAGCAAGGGCAAAGGGGCGGATAGTGAAACGGACGAAGACACGGACGAGG
AAACTGGGCTGTGGGGGGACGTAGATGGCGGAGGAATTGCGCACCTTGGC
CACGCATTCGACGTGAAGGAGTCAGCCTACGACACGTTGGAGGCCACATT
CATTCGCCACGGTCATCGGGGAGCTCGAAGAAGAAGGGCATCTAACCCTN
CAAGAAGGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_242:982543..983853+

>EsuBft2487_3a-0001 ID=EsuBft2487_3a-0001|Name=EsuBft2487_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=813bp|location=Sequence derived from alignment at Scaffold_242:982543..983853+ (Ectocarpus subulatus male Bft15b)
ATGGCACTGGACATGGACAAGACACCATGGACCACGAGAAGGGCAGGAAC
GGTGGAACATGCGGCCCAGAGGAACCGCGTGGAGGAACCGGCAAGGGTGT
CGACGACGTGTCCGAGGGGGGCAAACGGCAGGCAACCAAGGACGGGCTTT
CAACGGGTGCGCCGGCAGGGGACTGCGGCGGGGCAACGGATATGGAGATC
CGTGAACTACGAAGGAAATCTCATGGGTTTCAGCGGCTCGCACTCGCTCG
AGAGGGGAGGGGAGGGCAGGAAGTCAGATGGGCAGAAAAGGTCGGGGCGT
GAAAAGGAAACAGCGAAGGGGAGCAGCAGGAAGGGCGGGCGTTTTACCGA
CGATGAGGATCTGGACGGGAAATCGAGCGGAGGTCAACGAGGCAACGACA
AAAAGGTGGGCGACCCTGATGAAGACGAGGATGCCGACGATCTTGCCTCC
GATTATGAAGAACTTGCCTCCGACTATGAAGACGACCACGATTATGAAGA
CGACCGCGATGACGAAGCCGACAGCGAAGACGACCGCGATGATGAAGACG
ACCAACAAGGCGGGATCAAGAAGGTGATCAAGAAGGAATGTGCCAGGGGT
AAGAGCAAGGGCAAAGGGGCGGATAGTGAAACGGACGAAGACACGGACGA
GGAAACTGGGCTGTGGGGGGACGTAGATGGCGGAGGAATTGCGCACCTTG
GCCACGCATTCGACGTGAAGGAGTCAGCCTACGACACGTTGGAGGCCACA
TTCATTCGCCACGGTCATCGGGGAGCTCGAAGAAGAAGGGCATCTAACCC
TNCAAGAAGGTGA
back to top