EsuBft2479_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2479_4a-0001
Unique NameEsuBft2479_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:576763..577324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2479_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length56
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_4aEsuBft2479_4aEctocarpus subulatus male Bft15bgeneScaffold_630 576763..577324 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_4a-0001-exonEsuBft2479_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 576763..577324 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_4a-0001-exonagat-three_prime_utr-9975Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 576763..576793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_4a-0001-cdsEsuBft2479_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 576794..577324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_4a-0001EsuBft2479_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 576794..577324 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2479_4a-0001 ID=EsuBft2479_4a-0001|Name=EsuBft2479_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=562bp|location=Sequence derived from alignment at Scaffold_630:576763..577324- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGCTAATGCCGCTTGTGGAAGAAGCTATGAAGGCAACCAAGAA
CGAGGAGCCAGCTGGCACCATGCAGGGTGCCGCTGATCGCGGCGATGCTA
AGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGTACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGACTTTGTCGCGCAAG
AGGTGAGAGTAGCCGCTGCTCGCAACCAAGATTGTAGTAGTGCCATGGGA
GATGGTGGTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGAT
GGGGTACCAAAGTGTGCGATACACTTCTCCTCCGTTCAGCGAGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCTAATGGCGCA
AACCTGTTGGAACGATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAA
CAGCGGCAGCAGTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACACGTG
GAACTTCCTGTC
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protein sequence of EsuBft2479_4a-0001

>EsuBft2479_4 ID=EsuBft2479_4|Name=EsuBft2479_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=176bp
MSQLMPLVEEAMKATKNEEPAGTMQGAADRGDAKESAAAESTNAEGGVPW
TGSAQDGRYLREPVRESGPSGRHSGEAGDFVAQEVRVAAARNQDCSSAMG
DGGAAVGFGYGATTPAMGYQSVRYTSPPFSEKSKDFNEWLNDFRMAANGA
NLLERFEESGSLEIPVNSGSSTGASK
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mRNA from alignment at Scaffold_630:576763..577324-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2479_4a-0001 ID=EsuBft2479_4a-0001|Name=EsuBft2479_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=562bp|location=Sequence derived from alignment at Scaffold_630:576763..577324- (Ectocarpus subulatus male Bft15b)
ATGAGCCAGCTAATGCCGCTTGTGGAAGAAGCTATGAAGGCAACCAAGAA
CGAGGAGCCAGCTGGCACCATGCAGGGTGCCGCTGATCGCGGCGATGCTA
AGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGTACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGACTTTGTCGCGCAAG
AGGTGAGAGTAGCCGCTGCTCGCAACCAAGATTGTAGTAGTGCCATGGGA
GATGGTGGTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGAT
GGGGTACCAAAGTGTGCGATACACTTCTCCTCCGTTCAGCGAGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCTAATGGCGCA
AACCTGTTGGAACGATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAA
CAGCGGCAGCAGTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACACGTG
GAACTTCCTGTC
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Coding sequence (CDS) from alignment at Scaffold_630:576763..577324-

>EsuBft2479_4a-0001 ID=EsuBft2479_4a-0001|Name=EsuBft2479_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=531bp|location=Sequence derived from alignment at Scaffold_630:576763..577324- (Ectocarpus subulatus male Bft15b)
ATGAGCCAGCTAATGCCGCTTGTGGAAGAAGCTATGAAGGCAACCAAGAA
CGAGGAGCCAGCTGGCACCATGCAGGGTGCCGCTGATCGCGGCGATGCTA
AGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGTACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGACTTTGTCGCGCAAG
AGGTGAGAGTAGCCGCTGCTCGCAACCAAGATTGTAGTAGTGCCATGGGA
GATGGTGGTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGAT
GGGGTACCAAAGTGTGCGATACACTTCTCCTCCGTTCAGCGAGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCTAATGGCGCA
AACCTGTTGGAACGATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAA
CAGCGGCAGCAGTACCGGAGCGAGCAAGTAG
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