EsuBft2463_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2463_4a-0001
Unique NameEsuBft2463_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:82617..83501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2463_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length78
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2463_4aEsuBft2463_4aEctocarpus subulatus male Bft15bgeneScaffold_561 82617..83501 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2463_4a-0001-exonEsuBft2463_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 82617..83067 -
EsuBft2463_4a-0001-exonagat-exon-76005Ectocarpus subulatus male Bft15bexonScaffold_561 83167..83501 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2463_4a-0001-exonagat-three_prime_utr-9909Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_561 82617..82906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2463_4a-0001-cdsEsuBft2463_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 82907..83067 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2463_4a-0001-exonagat-five_prime_utr-6360Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_561 83447..83501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2463_4a-0001EsuBft2463_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 82907..83446 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2463_4a-0001 ID=EsuBft2463_4a-0001|Name=EsuBft2463_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=786bp|location=Sequence derived from alignment at Scaffold_561:82617..83501- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGTAGGCCGCAATCACTCTAGAGTTTGCCCCTCGATGGAAGCCACA
TCGCGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCAAGCGTAGAA
CAGATCCGCCCGCCGGTGCAGGACGGCCACGACGCGGAGCTTACAAGTTT
GCAACGGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAGTCGGTGAAGA
AGAAGGAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGTGGCTGG
GTTGCTGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTTGGCGG
TGGCGGGGGATTTCTCCAGCAGCAAACGAGAGATAATAGTGGGCAAGAAC
CACGGCTGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCT
GTTGGACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGC
GAGGGGGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft2463_4a-0001

>EsuBft2463_4 ID=EsuBft2463_4|Name=EsuBft2463_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MSSAGDEERAAASVEQIRPPVQDGHDAELTSLQRQISQLAALVEESVKKK
EPGSVVADAASRGGWVAAPRGQREEPTLPLGGGGGFLQQQTRDNSGQEPR
LLLEGGWASRSGANPVGPAGVGPGIGPDYGEARGLNPPGEIPVIRGX
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mRNA from alignment at Scaffold_561:82617..83501-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2463_4a-0001 ID=EsuBft2463_4a-0001|Name=EsuBft2463_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=885bp|location=Sequence derived from alignment at Scaffold_561:82617..83501- (Ectocarpus subulatus male Bft15b)
GTGGCGTAGGCCGCAATCACTCTAGAGTTTGCCCCTCGATGGAAGCCACA
TCGCGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCAAGCGTAGAA
CAGATCCGCCCGCCGGTGCAGGACGGCCACGACGCGGAGCTTACAAGTTT
GCAACGGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAGTCGGTGAAGA
AGAAGGAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGTGGCTGG
GTTGCTGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTTGGCGG
TGGCGGGGGATTTCTCCAGCAGCAAACGAGAGATAGTGGGCAAGNTGGCG
GCTGGGTTGCCGCCACCGGAGGCCAAGATCAGCCCCTGCTGCCGCACGGC
GGAGGCGGGGGATTTCTCCAGCAGCAAGCGAGAGATAGTGGGCAAGAACC
ACGGCTGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTG
TTGGACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCG
AGGGGGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_561:82617..83501-

>EsuBft2463_4a-0001 ID=EsuBft2463_4a-0001|Name=EsuBft2463_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_561:82617..83501- (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCAAGCGTAGAACAGAT
CCGCCCGCCGGTGCAGGACGGCCACGACGCGGAGCTTACAAGTTTGCAAC
GGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAGTCGGTGAAGAAGAAG
GAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGTGGCTGGGTTGC
TGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTTGGCGGTGGCG
GGGGATTTCTCCAGCAGCAAACGAGAGATAATAGTGGGCAAGAACCACGG
CTGCTGCTGGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTTGG
ACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAGGG
GGTTAAACCCCCCAGGTGAGATACCCGTGATTCGAGGNNNN
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