EsuBft2440_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2440_2a-0001
Unique NameEsuBft2440_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:391429..394416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2440_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length143
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2440_2aEsuBft2440_2aEctocarpus subulatus male Bft15bgeneScaffold_68 391429..394416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2440_2a-0001EsuBft2440_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 391934..394360 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2440_2a-0001-exonagat-exon-19857Ectocarpus subulatus male Bft15bexonScaffold_68 391429..392275 -
EsuBft2440_2a-0001-exonagat-exon-19856Ectocarpus subulatus male Bft15bexonScaffold_68 392359..392609 -
EsuBft2440_2a-0001-exonEsuBft2440_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 392996..393032 -
EsuBft2440_2a-0001-exonagat-exon-19855Ectocarpus subulatus male Bft15bexonScaffold_68 394121..394416 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2440_2a-0001-exonagat-three_prime_utr-9826Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 391429..391933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2440_2a-0001-cdsEsuBft2440_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 391934..392275 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2440_2a-0001-exonagat-five_prime_utr-6311Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 394361..394416 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2440_2a-0001 ID=EsuBft2440_2a-0001|Name=EsuBft2440_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1431bp|location=Sequence derived from alignment at Scaffold_68:391429..394416- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTTCAAGAGGAGCTTTTTTTGTGACGGTGAGGAACTCATCGATCTCG
ACGACCATGACCAAGAACGTCCGCGCCAGCTACATCCTCGGCACCACCTT
CATCGCCGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCT
ACCACATCGTCGCCCTCTCCAACGACGTCACCATCATCGAACGCCTATCC
AAGACGCCCACCCTAGAAGCGATTGATCTCGCCTTTCGCCCTACTGCCGG
GGTCGGCGCTTCTTCCAACTGCCCTGGCACCAACGAAAAACGAAAGGATA
CAATTGCCATCCGCTATTTCCATCGGAACGGAGGCTGTTCAAGAGGAGCT
TTTTTTGTGACGGTGAGGAACTCATCGATCTCGACGACCATGACCAAGAA
CGTCCGCGCCAGCTACATCCTCGGCACCACCTTCATCGCCGCTGTCGAGA
AGAAGAAATGGGGGCACCAGAACTGTTGGGGCTACCACATCGTCGCCCTC
TCCAACGACGTCACCATCATCGAACGCCTATCCAAGACGCCCACCCTAGA
AGCGATTGATCTCGCCTCTCGCCCTACTGCCGGGGTCCGATCCCCATCCC
GTTCCCGCGCCGACTCTTCTGGAGAAGAACCCGAAGAAGAAACCAACGAC
GACTACCCCGACGACAAACCGGACCCCGACTTTGCCCCCGGCGACGAAGG
GGACGACAACGAAGACAACGACGAAGACGACGACGACACTGACGATGCCG
ACAACGACGATGCCGACAACCGCGGCAACGGCGACAACGACGATGCCGGC
TCCGACTATGCCGACTCCGATAACGCCGCCTCCGACGACGGCTATGACAC
CGAATGGTGTTTCCGTTTATCTGCCTTCCTTTGTTCGTTTGTTTGCCCTG
AAGTCGGCCACCTCTCTGCATCATAGTGTCCGCTTCGGTGTTTTCCCGCG
TATGTTTTGGGTGTTTGATCGCTGTTGCTTTCGCGTGTCTTCGGCTGTCT
TTTCTTGAGTACTTTTGATTGTGTCCATCTTGAGTGCTGTTCTACGAATC
TTCATGCCAAACGATCGTTGAGCGTACTTTGGTACCACGTACCGTTGTAG
CTTAACAACCGTTGGCCCAAACGATCGATTGATTGTAGTTTTGCATCGTT
TTCTGCACGGACCATTGAATTTTTCTGCCCCCATTTTGAGTTGTCGATCC
ACGCTATCGTCGACTATCTTTGTCGATGAATCTGATTGAGCATTGTTGCT
CCACATCATCGTGTTCGCTGGGAATGTTCTTATCTTTTCCACGTGCCTTC
GCTAAACTGGTTTCCAATTTAATTTTCGTTCTTCACGTTTGTTGGGTATG
TGATTTCCGCTTCATTTTGTGATTCCCTGTACTCGTCCAAAATTTCCTTC
TATTCTTGTGAATTTTGTTCCACAATTCAAT
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protein sequence of EsuBft2440_2a-0001

>EsuBft2440_2 ID=EsuBft2440_2|Name=EsuBft2440_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=289bp
MTKNVRASYILGTTFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERLSKT
PTLEAIDLAFRPTAGVGASSNCPGTNEKRKDTIAIRYFHRNGGCSRGAFF
VTVRNSSISTTMTKNVRASYILGTTFIAAVEKKKWGHQNCWGYHIVALSN
DVTIIERLSKTPTLEAIDLASRPTAGVRSPSRSRADSSGEEPEEETNDDY
PDDKPDPDFAPGDEGDDNEDNDEDDDDTDDADNDDADNRGNGDNDDAGSD
YADSDNAASDDGYDTEWCFRLSAFLCSFVCPEVGHLSAS
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mRNA from alignment at Scaffold_68:391429..394416-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2440_2a-0001 ID=EsuBft2440_2a-0001|Name=EsuBft2440_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2988bp|location=Sequence derived from alignment at Scaffold_68:391429..394416- (Ectocarpus subulatus male Bft15b)
GCTGTTCAAGAGGAGCTTTTTTTGTGACGGTGAGGAACTCATCGATCTCG
ACGACCATGACCAAGAACGTCCGCGCCAGCTACATCCTCGGCACCACCTT
CATCGCCGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCT
ACCACATCGTCGCCCTCTCCAACGACGTCACCATCATCGAACGCCTATCC
AAGACGCCCACCCTAGAAGCGATTGATCTCGCCTTTCGCCCTACTGCCGG
GGTCGGCGCTTCTTCCAACTGCCCTGGCACCAACGAAAAACGAAAGGTTC
CCTCAGGCGCGCGACGAAAGCATAAAACCGCAAGGTCCGATCCCCATCCC
GTTCCCGCGCCGACTCTTCTGGAGAAGAACCCGAAGAAGAAACCAACGAC
GACTACCCCACGGTAACCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTG
TTTTACAACGTGGGGGGGGGAGGTACGAAATTCCGGGCACAAGATCTGGC
GGTTGCTCCCGGTGGTCCTTGATAACGTGGCCTTGGCTCTCGTTGACAAT
GTTGAGAATCATGGGTCTGTGTACACTACTGTCGCGGCGTCATGAGGTGA
CAGGAGCACGGCTGGATCTGGGAACAACACCGTCCGTGTTCGGGCGGTTT
GATTCCACACCTGGTAAATGACTGTTTTTTTCTTATCGGCGGTTTTGTTG
GAGCGGAACCCAACCCTCGTGCTTATGCTGTCGACGTGAGGGGTGCGTTG
CCAGGCGATGGCTCGTTCTCGGCTACAGGAACACCGGATGCCGTCGCAGA
ACACAGCATTGCTGACACTCAGGACAGGAAAAGCAGAACGAGTTGAAAAC
GGATCGTCGGTGTGCCCGTGCGTCTTGCCGTAGGCCCTGAGAGTCATGGG
AGTGTCTGCCGGAACATTCCCATCTACCGCTGATGGAAGGGTCTTGCCCC
CCGTAGGGTGCAGCGTTGTCGTGACAGCAGTGTTGCAGAACGAGTGTTTT
TCACCCACCCGCTGCAACCTCGACCTTTTCCTTCTCCCGACCTCCACCGC
CTGCCACCTCTATCTTTCTCTCGCCCACGATCTACCAGAATATGTTGACC
CCTTGCAAGGTTTTGTCCTTCGACGTCATTTCGGCACAACAAGCGCCGGC
GAACGTATACCCGCTCATGGTGCATTTCTCGGCTTCCGGTCCGGTCGTTC
GCATGAGGTGCGGCTTGGGCACGCCGGAGTGCAATTCCACCCGCAATCCT
TGTGCCGAGCTTCCCATAGCTTGCACCAACAAGATCACACCTCGTCTCCA
TCGCGATTACGACATGATCCCGAAACCATTCACCGCCATCCAACCGCACA
TGACCGTCGATTGCGGACCGCACACGAAGGACAGGATACAATTGCCATCC
GCTATTTCCATCGGAACGGAGGTATGTTTTCTTTTTGGGCCCATATTTTC
GACGCCAAAATAAGTTCGTTTCCATTAACATTGAACTTGCTCCCTGTTCC
ACACTAGGTAACAGCTAAACATCGCCATGTACTTCTACTCCCTCCATCGC
GTCTGCTCTTCCACTCCTTCCATATACTTCGCCGCCCTGTTCTTGCACAA
CGCGACGCGAGGTGTACCGAACGGGTACTTGCATCACATACTTTGGCATT
CATGGTGCCGTGTACTTTTAACCGTACTTTGTGCCGCCTGTGCGATCATT
CTGACTCATACACACCAGTACGATTTGCTTGACACGACCTGTTGGTCATT
TTCGACCCTCTGCAACTTTCCAATCATTCATACCTCTCTTCTTTGCCCTT
TCCTCAGGCTGTTCAAGAGGAGCTTTTTTTGTGACGGTGAGGAACTCATC
GATCTCGACGACCATGACCAAGAACGTCCGCGCCAGCTACATCCTCGGCA
CCACCTTCATCGCCGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGT
TGGGGCTACCACATCGTCGCCCTCTCCAACGACGTCACCATCATCGAACG
CCTATCCAAGACGCCCACCCTAGAAGCGATTGATCTCGCCTCTCGCCCTA
CTGCCGGGGTCGGCGCTTCTTCCAACTGCCCTGGCACCAACGAAAAACGA
AAGGTTCCCTCAGGCGCGCGACGAAAGCATAAAACCGCAAGGTCCGATCC
CCATCCCGTTCCCGCGCCGACTCTTCTGGAGAAGAACCCGAAGAAGAAAC
CAACGACGACTACCCCGACGACAAACCGGACCCCGACTTTGCCCCCGGCG
ACGAAGGGGACGACAACGAAGACAACGACGAAGACGACGACGACACTGAC
GATGCCGACAACGACGATGCCGACAACCGCGGCAACGGCGACAACGACGA
TGCCGGCTCCGACTATGCCGACTCCGATAACGCCGCCTCCGACGACGGCT
ATGACACCGAATGGTGTTTCCGTTTATCTGCCTTCCTTTGTTCGTTTGTT
TGCCCTGAAGTCGGCCACCTCTCTGCATCATAGTGTCCGCTTCGGTGTTT
TCCCGCGTATGTTTTGGGTGTTTGATCGCTGTTGCTTTCGCGTGTCTTCG
GCTGTCTTTTCTTGAGTACTTTTGATTGTGTCCATCTTGAGTGCTGTTCT
ACGAATCTTCATGCCAAACGATCGTTGAGCGTACTTTGGTACCACGTACC
GTTGTAGCTTAACAACCGTTGGCCCAAACGATCGATTGATTGTAGTTTTG
CATCGTTTTCTGCACGGACCATTGAATTTTTCTGCCCCCATTTTGAGTTG
TCGATCCACGCTATCGTCGACTATCTTTGTCGATGAATCTGATTGAGCAT
TGTTGCTCCACATCATCGTGTTCGCTGGGAATGTTCTTATCTTTTCCACG
TGCCTTCGCTAAACTGGTTTCCAATTTAATTTTCGTTCTTCACGTTTGTT
GGGTATGTGATTTCCGCTTCATTTTGTGATTCCCTGTACTCGTCCAAAAT
TTCCTTCTATTCTTGTGAATTTTGTTCCACAATTCAAT
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Coding sequence (CDS) from alignment at Scaffold_68:391429..394416-

>EsuBft2440_2a-0001 ID=EsuBft2440_2a-0001|Name=EsuBft2440_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=870bp|location=Sequence derived from alignment at Scaffold_68:391429..394416- (Ectocarpus subulatus male Bft15b)
ATGACCAAGAACGTCCGCGCCAGCTACATCCTCGGCACCACCTTCATCGC
CGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCTACCACA
TCGTCGCCCTCTCCAACGACGTCACCATCATCGAACGCCTATCCAAGACG
CCCACCCTAGAAGCGATTGATCTCGCCTTTCGCCCTACTGCCGGGGTCGG
CGCTTCTTCCAACTGCCCTGGCACCAACGAAAAACGAAAGGATACAATTG
CCATCCGCTATTTCCATCGGAACGGAGGCTGTTCAAGAGGAGCTTTTTTT
GTGACGGTGAGGAACTCATCGATCTCGACGACCATGACCAAGAACGTCCG
CGCCAGCTACATCCTCGGCACCACCTTCATCGCCGCTGTCGAGAAGAAGA
AATGGGGGCACCAGAACTGTTGGGGCTACCACATCGTCGCCCTCTCCAAC
GACGTCACCATCATCGAACGCCTATCCAAGACGCCCACCCTAGAAGCGAT
TGATCTCGCCTCTCGCCCTACTGCCGGGGTCCGATCCCCATCCCGTTCCC
GCGCCGACTCTTCTGGAGAAGAACCCGAAGAAGAAACCAACGACGACTAC
CCCGACGACAAACCGGACCCCGACTTTGCCCCCGGCGACGAAGGGGACGA
CAACGAAGACAACGACGAAGACGACGACGACACTGACGATGCCGACAACG
ACGATGCCGACAACCGCGGCAACGGCGACAACGACGATGCCGGCTCCGAC
TATGCCGACTCCGATAACGCCGCCTCCGACGACGGCTATGACACCGAATG
GTGTTTCCGTTTATCTGCCTTCCTTTGTTCGTTTGTTTGCCCTGAAGTCG
GCCACCTCTCTGCATCATAG
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