Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2436_5 |
| Protein domains | Coil |
| Protein domains | PF14223 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 114 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2436_5a-0001 ID=EsuBft2436_5a-0001|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1144bp|location=Sequence derived from alignment at Scaffold_544:192492..193635- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGCTACCGCACCCAAACACAATACAATATATTGTAAGGCCTGGTGTTGGT
AGTGGGTATTGGCGTATGAGCAGTGGGAGCTGGGCCATCGGGGCAGCGGA
CACCATTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTG
CATAGCTGGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTATAG
CTGGGACAGCACTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAG
TTTGATATGTCTGGAACGGAGGAGGACGCAACTCTGAGCGCGAGGTTGGA
TGAGGCGCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCA
AAGCTGAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCA
CCTGCCGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCTTGGAGGGGC
TTCATCTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATG
GCGGTACTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAATT
CCTGTGCCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAACTG
GCGGAGACGCTTTCTGGCCTACGTGGGCAACCACAATCTCCAGCACACAA
TCTTTGGCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATAC
TTGACACGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATG
GAGTTTTATCTTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACAACCTGT
ACTCTTGCCATTCCGTGGCAGAGGCGTGGAGGATGATGGAGGATTGGTAT
TTGCCGAACCACCCAGCTGATTGTCAGCTCCTCGTCGCCGAGCTAGACAA
TATAACCATGAGTGATGATGAGGACCTCAAGCTTTTCTTCTCGCGCGTCG
CACAACTGGAGACCAAGTTACGGGCTGTGGGCATTGCTAAGAGTGACCAG
GAAGTTGTGCAGATCCTTGTGCGCCAACTCCCCGCACGCTGCGATGTCGA
GAAGCGCATAGTCTTTCCAAGCGTGATTTATCCCGCGCTGAGTTGCAGGA
CATCGTGCGTGGTCGATATGCCACGCTCAAGGCCAGCGAGATGA back to topprotein sequence of EsuBft2436_5a-0001 >EsuBft2436_5 ID=EsuBft2436_5|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=295bp
MSGTEEDATLSARLDEALRAIEEAKAETKEAKAETEELRAAQRRSAGAPA
GSSSGGDGLVALGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRIPV
PRIPPNCTADTFLNWRRRFLAYVGNHNLQHTIFGSAEVPVVSCQDEGYLT
RQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLP
NHPADCQLLVAELDNITMSDDEDLKLFFSRVAQLETKLRAVGIAKSDQEV
VQILVRQLPARCDVEKRIVFPSVIYPALSCRTSCVVDMPRSRPAR back to topmRNA from alignment at Scaffold_544:192492..193635- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2436_5a-0001 ID=EsuBft2436_5a-0001|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1144bp|location=Sequence derived from alignment at Scaffold_544:192492..193635- (Ectocarpus subulatus male Bft15b)
AGCTACCGCACCCAAACACAATACAATATATTGTAAGGCCTGGTGTTGGT
AGTGGGTATTGGCGTATGAGCAGTGGGAGCTGGGCCATCGGGGCAGCGGA
CACCATTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTG
CATAGCTGGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTATAG
CTGGGACAGCACTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAG
TTTGATATGTCTGGAACGGAGGAGGACGCAACTCTGAGCGCGAGGTTGGA
TGAGGCGCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCA
AAGCTGAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCA
CCTGCCGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCTTGGAGGGGC
TTCATCTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATG
GCGGTACTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAATT
CCTGTGCCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAACTG
GCGGAGACGCTTTCTGGCCTACGTGGGCAACCACAATCTCCAGCACACAA
TCTTTGGCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATAC
TTGACACGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATG
GAGTTTTATCTTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACAACCTGT
ACTCTTGCCATTCCGTGGCAGAGGCGTGGAGGATGATGGAGGATTGGTAT
TTGCCGAACCACCCAGCTGATTGTCAGCTCCTCGTCGCCGAGCTAGACAA
TATAACCATGAGTGATGATGAGGACCTCAAGCTTTTCTTCTCGCGCGTCG
CACAACTGGAGACCAAGTTACGGGCTGTGGGCATTGCTAAGAGTGACCAG
GAAGTTGTGCAGATCCTTGTGCGCCAACTCCCCGCACGCTGCGATGTCGA
GAAGCGCATAGTCTTTCCAAGCGTGATTTATCCCGCGCTGAGTTGCAGGA
CATCGTGCGTGGTCGATATGCCACGCTCAAGGCCAGCGAGATGA back to topCoding sequence (CDS) from alignment at Scaffold_544:192492..193635- >EsuBft2436_5a-0001 ID=EsuBft2436_5a-0001|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=888bp|location=Sequence derived from alignment at Scaffold_544:192492..193635- (Ectocarpus subulatus male Bft15b)
ATGTCTGGAACGGAGGAGGACGCAACTCTGAGCGCGAGGTTGGATGAGGC
GCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCAAAGCTG
AGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCACCTGCC
GGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCTTGGAGGGGCTTCATC
TGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATGGCGGTA
CTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAATTCCTGTG
CCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAACTGGCGGAG
ACGCTTTCTGGCCTACGTGGGCAACCACAATCTCCAGCACACAATCTTTG
GCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGACA
CGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATGGAGTTT
TATCTTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACAACCTGTACTCTT
GCCATTCCGTGGCAGAGGCGTGGAGGATGATGGAGGATTGGTATTTGCCG
AACCACCCAGCTGATTGTCAGCTCCTCGTCGCCGAGCTAGACAATATAAC
CATGAGTGATGATGAGGACCTCAAGCTTTTCTTCTCGCGCGTCGCACAAC
TGGAGACCAAGTTACGGGCTGTGGGCATTGCTAAGAGTGACCAGGAAGTT
GTGCAGATCCTTGTGCGCCAACTCCCCGCACGCTGCGATGTCGAGAAGCG
CATAGTCTTTCCAAGCGTGATTTATCCCGCGCTGAGTTGCAGGACATCGT
GCGTGGTCGATATGCCACGCTCAAGGCCAGCGAGATGA back to top
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