EsuBft2436_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2436_2a-0001
Unique NameEsuBft2436_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:205959..208260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2436_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length117
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_2aEsuBft2436_2aEctocarpus subulatus male Bft15bgeneScaffold_544 205959..208260 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_2a-0001-exonagat-exon-36521Ectocarpus subulatus male Bft15bexonScaffold_544 205959..205976 +
EsuBft2436_2a-0001-exonEsuBft2436_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 206061..206217 +
EsuBft2436_2a-0001-exonagat-exon-36522Ectocarpus subulatus male Bft15bexonScaffold_544 207259..208260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_2a-0001-cdsEsuBft2436_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 205959..205976 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_2a-0001-exonagat-three_prime_utr-9801Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 207870..208260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_2a-0001EsuBft2436_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 205959..207869 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2436_2a-0001 ID=EsuBft2436_2a-0001|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_544:205959..208260+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGTCGGTCAGGAGACCCTTGCTGATCGTCTCTCAGCAATAACAAG
CAACTTTCCCATCTCAACGTGGTCGTGGACAAGCGTGTCAACGATAGAAC
CTTCATCTATCTCTAGGAGCAAGCTACCGCCCACGGCATCGCTCCTTGAA
ACTTGGCGTCAGGTGGCATTACACGAGGACACCATGTCCAGCGGCAACGT
GGAACTCCTGGGCGACAATGTGGAAATCCTCGACTACGAACCCGAGGGCG
AGGCTCCCACCGCAGAGCAGTTTCCAGCGGCGAGTGCAGAAGACGAGAGC
CCCCCCATGTCCATGGTGTTCACCGTCGATGATTTGCTGGACAACATCGC
CACAGCAGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCT
CTCTGGAGGATATCGTAGAAGCGGCCCATCTGTCGTCCGATTCCCCCCTT
TTCGTTCCTCCTTTCTCGCTCCCGCCGGAAGACAGATTAATCCTCTTGCC
CCACGACGAGTTTATGGCGTACCAAAGGTTGAACGAGATGTGGTGCGACG
GTCTTGCCGGGAAGATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGC
GAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTGGCCGCTGCGGC
GAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGCTGCGGCGAGGA
AGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAG
GAGGAGGAGCGTGCGGCTGTTCTGGCGGAGCGTTAGGCGTATCTCCAAGC
GGCTAGAGCGAAGCAGGGGGCGCTCCGATCGCGGCTGAAGGAGCTGGAGC
CCCGTCACCAGGACCCGCGAGCAGCCCCCCACCTCCGTCGCCGTGTCATC
GTCCCCCCCCCCACGCAATCCCAGGTGCACCTTGGTTCCCATCGTACCGC
CTCGCCGCACGAGAAGGAGCGGGAGGTGGCGGCGTCTCCGACGAACGAGA
AGGAGCGGAAGAGGACAGCGACTCCGGAGTTTTCGGTGACTTTGGGTCTT
CCGGCTGGTGCTGAAGACGGAGCATCGTTTGCGGCGGCAACCATGGTGTA
CGAGTTCCACGTTGGAGATACAGCGTTCCTGTCCCGCCCGCTGGAGATGC
CTGCAGAAGGTGTCACCTTCCACGATG
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protein sequence of EsuBft2436_2a-0001

>EsuBft2436_2 ID=EsuBft2436_2|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=261bp
MRVGQETLADRLSAITSNFPISTWSWTSVSTIEPSSISRSKLPPTASLLE
TWRQVALHEDTMSSGNVELLGDNVEILDYEPEGEAPTAEQFPAASAEDES
PPMSMVFTVDDLLDNIATADPAELERAYNTGRVSLEDIVEAAHLSSDSPL
FVPPFSLPPEDRLILLPHDEFMAYQRLNEMWCDGLAGKIAEAEAREQAKR
EDAERLAEREAALAAAARKQEEEREAVRAAAARKQEEEREAALAAAARKQ
EEERAAVLAER
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mRNA from alignment at Scaffold_544:205959..208260+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2436_2a-0001 ID=EsuBft2436_2a-0001|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2302bp|location=Sequence derived from alignment at Scaffold_544:205959..208260+ (Ectocarpus subulatus male Bft15b)
ATGCGGGTCGGTCAGGAGGTACACCCTTCTGACCCCTACCCCCTTAGAAT
TGTCTACTCTGTGTACCCCCTGAGATGAAGTTGGATCGCCACTTCATCCC
AGACCCTTGCTGATCGTCTCTCAGCAATAACAAGCAACTTTCCCATCTCA
ACGTGGTCGTGGACAAGCGTGTCAACGATAGAACCTTCATCTATCTCTAG
GAGCAAGCTACCGCCCACGGCATCGCTCCTTGAAACTTGGCGTCAGGTGG
CATTACACGGTAAGCGGGTGCTGGACGCGGCTTCCACACTGCTGTGGGCA
AACCGCTTTTTTCACAACCACCGGGTTGCTTGTTGTTTGGTCTCACCACC
CACGAGAATCTAGACTTAGCCGCATCTCCGCTTCCTCTCCTGTAGAGATG
CTGGCTCGTGATGCTTGTGCGAAGCGCCCGCGGGACTGGGACCTTGCAAA
GGATACGCGCCTTGGAGGCCATCGCGATGTTATGGGTGATTTTCCGCACG
TTCGCCGTCCCTCGAAAGCTATTTTGTCTGCATCGGCGGTCCATGAAGTG
ATTTCTGTGGCGGATACCCTCTGCATGAGCGTCCTGAGTTGCTGGCCTTG
TGTAGTGGGACCCGACATGACAGCATGCTTCCCACGTCTGCTACCACCTC
TACTGCATTCATGCCGGCGTACCGGCCGATGTCCGCGGATTTTCCTGTTG
TGCTGTCCGATTTGACTCCGCTTGCATCGACTTGGAACGCGATGTGTGCA
CACAAATTGGGTGTCAGCCGCCCCACCAGCCTTCCCTCCATTTTCCGAAA
TCACATGGCACTACTTTTCGGGGAATCGTTCACCCTCAAAGCATTTGAAT
TGGAAACCTTTCAACAGCGCAAACCCACAGCGGTCTTTGCTCGCACTTCG
GCACCAGTTGCGGAGGAACGCCGTGCTGCTCTGCGTGTCTTTTGGTCGGA
AAACCTCGTGTCTCCATGCAACACGGGCCCTTTTGTGCTAGCTTCTACTG
CTGTTTGTGCGTGGCATGGTGTGCTTTTGGACGCTTTTTCTGCTTGGTTG
GATCCGCTTCAACCTCGTGTGCACCAAGCTTTTATCACTGGACATATGCT
ATCTTGTGGATATCTCCGCCTTTCGCATGGACCTCGGCTTGCTCTTCCCG
AAGTTGCACCCGGCTTTACTGCTTCTGCTGCTCTTGGTGCTGCTGCCTCA
ACTGCGGTTGGTTATCCTACATCTACTGTTTCTGGCCCTGCTGCCCTTTC
CAAAATCGATCGTAGCTACCCTCTCTCTGGCCCTGTTCTTGTTAACAAAG
AGGACACCATGTCCAGCGGCAACGTGGAACTCCTGGGCGACAATGTGGAA
ATCCTCGACTACGAACCCGAGGGCGAGGCTCCCACCGCAGAGCAGTTTCC
AGCGGCGAGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGTGTTCACCG
TCGATGATTTGCTGGACAACATCGCCACAGCAGATCCGGCGGAACTGGAG
CGGGCCTACAACACCGGACGTGTCTCTCTGGAGGATATCGTAGAAGCGGC
CCATCTGTCGTCCGATTCCCCCCTTTTCGTTCCTCCTTTCTCGCTCCCGC
CGGAAGACAGATTAATCCTCTTGCCCCACGACGAGTTTATGGCGTACCAA
AGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAAGATAGCAGAGGC
GGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTGGCGGAAC
GGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAG
GCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAACGTGAGGCTGC
TCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGCGGCTGTTCTGG
CGGAGCGTTAGGCGTATCTCCAAGCGGCTAGAGCGAAGCAGGGGGCGCTC
CGATCGCGGCTGAAGGAGCTGGAGCCCCGTCACCAGGACCCGCGAGCAGC
CCCCCACCTCCGTCGCCGTGTCATCGTCCCCCCCCCCACGCAATCCCAGG
TGCACCTTGGTTCCCATCGTACCGCCTCGCCGCACGAGAAGGAGCGGGAG
GTGGCGGCGTCTCCGACGAACGAGAAGGAGCGGAAGAGGACAGCGACTCC
GGAGTTTTCGGTGACTTTGGGTCTTCCGGCTGGTGCTGAAGACGGAGCAT
CGTTTGCGGCGGCAACCATGGTGTACGAGTTCCACGTTGGAGATACAGCG
TTCCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGGTGTCACCTTCCACGA
TG
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Coding sequence (CDS) from alignment at Scaffold_544:205959..208260+

>EsuBft2436_2a-0001 ID=EsuBft2436_2a-0001|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=786bp|location=Sequence derived from alignment at Scaffold_544:205959..208260+ (Ectocarpus subulatus male Bft15b)
ATGCGGGTCGGTCAGGAGACCCTTGCTGATCGTCTCTCAGCAATAACAAG
CAACTTTCCCATCTCAACGTGGTCGTGGACAAGCGTGTCAACGATAGAAC
CTTCATCTATCTCTAGGAGCAAGCTACCGCCCACGGCATCGCTCCTTGAA
ACTTGGCGTCAGGTGGCATTACACGAGGACACCATGTCCAGCGGCAACGT
GGAACTCCTGGGCGACAATGTGGAAATCCTCGACTACGAACCCGAGGGCG
AGGCTCCCACCGCAGAGCAGTTTCCAGCGGCGAGTGCAGAAGACGAGAGC
CCCCCCATGTCCATGGTGTTCACCGTCGATGATTTGCTGGACAACATCGC
CACAGCAGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCT
CTCTGGAGGATATCGTAGAAGCGGCCCATCTGTCGTCCGATTCCCCCCTT
TTCGTTCCTCCTTTCTCGCTCCCGCCGGAAGACAGATTAATCCTCTTGCC
CCACGACGAGTTTATGGCGTACCAAAGGTTGAACGAGATGTGGTGCGACG
GTCTTGCCGGGAAGATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGC
GAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTGGCCGCTGCGGC
GAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGCTGCGGCGAGGA
AGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAG
GAGGAGGAGCGTGCGGCTGTTCTGGCGGAGCGTTAG
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