Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2436_2 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 117 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2436_2a-0001 ID=EsuBft2436_2a-0001|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_544:205959..208260+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGGGTCGGTCAGGAGACCCTTGCTGATCGTCTCTCAGCAATAACAAG
CAACTTTCCCATCTCAACGTGGTCGTGGACAAGCGTGTCAACGATAGAAC
CTTCATCTATCTCTAGGAGCAAGCTACCGCCCACGGCATCGCTCCTTGAA
ACTTGGCGTCAGGTGGCATTACACGAGGACACCATGTCCAGCGGCAACGT
GGAACTCCTGGGCGACAATGTGGAAATCCTCGACTACGAACCCGAGGGCG
AGGCTCCCACCGCAGAGCAGTTTCCAGCGGCGAGTGCAGAAGACGAGAGC
CCCCCCATGTCCATGGTGTTCACCGTCGATGATTTGCTGGACAACATCGC
CACAGCAGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCT
CTCTGGAGGATATCGTAGAAGCGGCCCATCTGTCGTCCGATTCCCCCCTT
TTCGTTCCTCCTTTCTCGCTCCCGCCGGAAGACAGATTAATCCTCTTGCC
CCACGACGAGTTTATGGCGTACCAAAGGTTGAACGAGATGTGGTGCGACG
GTCTTGCCGGGAAGATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGC
GAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTGGCCGCTGCGGC
GAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGCTGCGGCGAGGA
AGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAG
GAGGAGGAGCGTGCGGCTGTTCTGGCGGAGCGTTAGGCGTATCTCCAAGC
GGCTAGAGCGAAGCAGGGGGCGCTCCGATCGCGGCTGAAGGAGCTGGAGC
CCCGTCACCAGGACCCGCGAGCAGCCCCCCACCTCCGTCGCCGTGTCATC
GTCCCCCCCCCCACGCAATCCCAGGTGCACCTTGGTTCCCATCGTACCGC
CTCGCCGCACGAGAAGGAGCGGGAGGTGGCGGCGTCTCCGACGAACGAGA
AGGAGCGGAAGAGGACAGCGACTCCGGAGTTTTCGGTGACTTTGGGTCTT
CCGGCTGGTGCTGAAGACGGAGCATCGTTTGCGGCGGCAACCATGGTGTA
CGAGTTCCACGTTGGAGATACAGCGTTCCTGTCCCGCCCGCTGGAGATGC
CTGCAGAAGGTGTCACCTTCCACGATG back to topprotein sequence of EsuBft2436_2a-0001 >EsuBft2436_2 ID=EsuBft2436_2|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=261bp
MRVGQETLADRLSAITSNFPISTWSWTSVSTIEPSSISRSKLPPTASLLE
TWRQVALHEDTMSSGNVELLGDNVEILDYEPEGEAPTAEQFPAASAEDES
PPMSMVFTVDDLLDNIATADPAELERAYNTGRVSLEDIVEAAHLSSDSPL
FVPPFSLPPEDRLILLPHDEFMAYQRLNEMWCDGLAGKIAEAEAREQAKR
EDAERLAEREAALAAAARKQEEEREAVRAAAARKQEEEREAALAAAARKQ
EEERAAVLAER back to topmRNA from alignment at Scaffold_544:205959..208260+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2436_2a-0001 ID=EsuBft2436_2a-0001|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2302bp|location=Sequence derived from alignment at Scaffold_544:205959..208260+ (Ectocarpus subulatus male Bft15b)
ATGCGGGTCGGTCAGGAGGTACACCCTTCTGACCCCTACCCCCTTAGAAT
TGTCTACTCTGTGTACCCCCTGAGATGAAGTTGGATCGCCACTTCATCCC
AGACCCTTGCTGATCGTCTCTCAGCAATAACAAGCAACTTTCCCATCTCA
ACGTGGTCGTGGACAAGCGTGTCAACGATAGAACCTTCATCTATCTCTAG
GAGCAAGCTACCGCCCACGGCATCGCTCCTTGAAACTTGGCGTCAGGTGG
CATTACACGGTAAGCGGGTGCTGGACGCGGCTTCCACACTGCTGTGGGCA
AACCGCTTTTTTCACAACCACCGGGTTGCTTGTTGTTTGGTCTCACCACC
CACGAGAATCTAGACTTAGCCGCATCTCCGCTTCCTCTCCTGTAGAGATG
CTGGCTCGTGATGCTTGTGCGAAGCGCCCGCGGGACTGGGACCTTGCAAA
GGATACGCGCCTTGGAGGCCATCGCGATGTTATGGGTGATTTTCCGCACG
TTCGCCGTCCCTCGAAAGCTATTTTGTCTGCATCGGCGGTCCATGAAGTG
ATTTCTGTGGCGGATACCCTCTGCATGAGCGTCCTGAGTTGCTGGCCTTG
TGTAGTGGGACCCGACATGACAGCATGCTTCCCACGTCTGCTACCACCTC
TACTGCATTCATGCCGGCGTACCGGCCGATGTCCGCGGATTTTCCTGTTG
TGCTGTCCGATTTGACTCCGCTTGCATCGACTTGGAACGCGATGTGTGCA
CACAAATTGGGTGTCAGCCGCCCCACCAGCCTTCCCTCCATTTTCCGAAA
TCACATGGCACTACTTTTCGGGGAATCGTTCACCCTCAAAGCATTTGAAT
TGGAAACCTTTCAACAGCGCAAACCCACAGCGGTCTTTGCTCGCACTTCG
GCACCAGTTGCGGAGGAACGCCGTGCTGCTCTGCGTGTCTTTTGGTCGGA
AAACCTCGTGTCTCCATGCAACACGGGCCCTTTTGTGCTAGCTTCTACTG
CTGTTTGTGCGTGGCATGGTGTGCTTTTGGACGCTTTTTCTGCTTGGTTG
GATCCGCTTCAACCTCGTGTGCACCAAGCTTTTATCACTGGACATATGCT
ATCTTGTGGATATCTCCGCCTTTCGCATGGACCTCGGCTTGCTCTTCCCG
AAGTTGCACCCGGCTTTACTGCTTCTGCTGCTCTTGGTGCTGCTGCCTCA
ACTGCGGTTGGTTATCCTACATCTACTGTTTCTGGCCCTGCTGCCCTTTC
CAAAATCGATCGTAGCTACCCTCTCTCTGGCCCTGTTCTTGTTAACAAAG
AGGACACCATGTCCAGCGGCAACGTGGAACTCCTGGGCGACAATGTGGAA
ATCCTCGACTACGAACCCGAGGGCGAGGCTCCCACCGCAGAGCAGTTTCC
AGCGGCGAGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGTGTTCACCG
TCGATGATTTGCTGGACAACATCGCCACAGCAGATCCGGCGGAACTGGAG
CGGGCCTACAACACCGGACGTGTCTCTCTGGAGGATATCGTAGAAGCGGC
CCATCTGTCGTCCGATTCCCCCCTTTTCGTTCCTCCTTTCTCGCTCCCGC
CGGAAGACAGATTAATCCTCTTGCCCCACGACGAGTTTATGGCGTACCAA
AGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAAGATAGCAGAGGC
GGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTGGCGGAAC
GGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAG
GCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAACGTGAGGCTGC
TCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGCGGCTGTTCTGG
CGGAGCGTTAGGCGTATCTCCAAGCGGCTAGAGCGAAGCAGGGGGCGCTC
CGATCGCGGCTGAAGGAGCTGGAGCCCCGTCACCAGGACCCGCGAGCAGC
CCCCCACCTCCGTCGCCGTGTCATCGTCCCCCCCCCCACGCAATCCCAGG
TGCACCTTGGTTCCCATCGTACCGCCTCGCCGCACGAGAAGGAGCGGGAG
GTGGCGGCGTCTCCGACGAACGAGAAGGAGCGGAAGAGGACAGCGACTCC
GGAGTTTTCGGTGACTTTGGGTCTTCCGGCTGGTGCTGAAGACGGAGCAT
CGTTTGCGGCGGCAACCATGGTGTACGAGTTCCACGTTGGAGATACAGCG
TTCCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGGTGTCACCTTCCACGA
TG back to topCoding sequence (CDS) from alignment at Scaffold_544:205959..208260+ >EsuBft2436_2a-0001 ID=EsuBft2436_2a-0001|Name=EsuBft2436_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=786bp|location=Sequence derived from alignment at Scaffold_544:205959..208260+ (Ectocarpus subulatus male Bft15b)
ATGCGGGTCGGTCAGGAGACCCTTGCTGATCGTCTCTCAGCAATAACAAG
CAACTTTCCCATCTCAACGTGGTCGTGGACAAGCGTGTCAACGATAGAAC
CTTCATCTATCTCTAGGAGCAAGCTACCGCCCACGGCATCGCTCCTTGAA
ACTTGGCGTCAGGTGGCATTACACGAGGACACCATGTCCAGCGGCAACGT
GGAACTCCTGGGCGACAATGTGGAAATCCTCGACTACGAACCCGAGGGCG
AGGCTCCCACCGCAGAGCAGTTTCCAGCGGCGAGTGCAGAAGACGAGAGC
CCCCCCATGTCCATGGTGTTCACCGTCGATGATTTGCTGGACAACATCGC
CACAGCAGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCT
CTCTGGAGGATATCGTAGAAGCGGCCCATCTGTCGTCCGATTCCCCCCTT
TTCGTTCCTCCTTTCTCGCTCCCGCCGGAAGACAGATTAATCCTCTTGCC
CCACGACGAGTTTATGGCGTACCAAAGGTTGAACGAGATGTGGTGCGACG
GTCTTGCCGGGAAGATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGC
GAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTGGCCGCTGCGGC
GAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGCTGCGGCGAGGA
AGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAG
GAGGAGGAGCGTGCGGCTGTTCTGGCGGAGCGTTAG back to top
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