EsuBft2421_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2421_3a-0001
Unique Name	EsuBft2421_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:286105..287409 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2421_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	130
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_3a	EsuBft2421_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 286105..287409 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_3a-0001-exon	EsuBft2421_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 286105..287409 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_3a-0001-exon	agat-three_prime_utr-9767	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 286105..287037 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_3a-0001-cds	EsuBft2421_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 287038..287409 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_3a-0001	EsuBft2421_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 287038..287409 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:286105..287409-
coding sequence from alignment at Scaffold_255:286105..287409-

spliced messenger RNA

>EsuBft2421_3a-0001 ID=EsuBft2421_3a-0001|Name=EsuBft2421_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1305bp|location=Sequence derived from alignment at Scaffold_255:286105..287409- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGTCTGCGCGGACCAACAACTGTGTAAACTCCCAAACCGACCACT
GGGAGAGAAAGATGGGCACGAGTGTCGCCTTGGCTGCGGTGGCAGGCTTC
ATGGGATATGTGGTGAACCAGAGGAGGAGGGCGGCCAAGAAATACACCGC
GTCTGCAACCCGTGCATCGCCAAGAAGCAGAAGACACCCGGCTCCTCGAA
ACAGCCTAAGCGTGCCTCGCCCGAATCCGAACTTGCCGGAGATGGCGCCG
CGGCGAAAAAGACCAAGCCAGCCGGGAAAGCAGCCGGGAAAGCGGGAAAA
TCGACGCGCACGCGGCTCAACTTCGGCCAGCAGCTTGAGGTTCTCAAGCT
CTTGGACGAGAAGACGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACT
ACCAGCGAGAACCGCATGTCTGAAAATGGCCAGTCAAGCACGCCAAGCAC
CGCGGTCGAGGTCCCCAAAGAACGCAAACGCTCGGCCTTCGGCGCGGGAG
GAAAAAATCGATTTCGTCGCAACCTCAAGAAAAACGAACGCAAATACATA
GAGCGGGAGGGGCGGACCTTTGCCGACGCGGCCGGAGCAGCGCACACACA
GCGCGCGGTCGAAAGGGGCGGTGTTGCCGTCGCGCAGAAAGCGCTGGTAG
AAAAGGAGCAGGAGTTGATCGAAAGTAGACAGCGCGAGGCGGCGAGCGCC
GCTGGGTGCAGCATTGCTCAGGAGCTCGTGCGAGAGAGCACCGAGGCGCT
GAAGGAGGAGAAGGCTAAGAGAGAGGAGGCAGAGCGGTCGCACTCGCGTG
TGGGTGCCGAGTGTTTTTGGTTCTGTCGGGGTTCTTCGGAGCGTTCTATG
TGATT

protein sequence of EsuBft2421_3a-0001

>EsuBft2421_3 ID=EsuBft2421_3|Name=EsuBft2421_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MLVCADQQLCKLPNRPLGEKDGHECRLGCGGRLHGICGEPEEEGGQEIHR
VCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGK
STRTRLNFGQQLEVLKLLDEKTTX

mRNA from alignment at Scaffold_255:286105..287409-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2421_3a-0001 ID=EsuBft2421_3a-0001|Name=EsuBft2421_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1305bp|location=Sequence derived from alignment at Scaffold_255:286105..287409- (Ectocarpus subulatus male Bft15b)
ATGCTAGTCTGCGCGGACCAACAACTGTGTAAACTCCCAAACCGACCACT
GGGAGAGAAAGATGGGCACGAGTGTCGCCTTGGCTGCGGTGGCAGGCTTC
ATGGGATATGTGGTGAACCAGAGGAGGAGGGCGGCCAAGAAATACACCGC
GTCTGCAACCCGTGCATCGCCAAGAAGCAGAAGACACCCGGCTCCTCGAA
ACAGCCTAAGCGTGCCTCGCCCGAATCCGAACTTGCCGGAGATGGCGCCG
CGGCGAAAAAGACCAAGCCAGCCGGGAAAGCAGCCGGGAAAGCGGGAAAA
TCGACGCGCACGCGGCTCAACTTCGGCCAGCAGCTTGAGGTTCTCAAGCT
CTTGGACGAGAAGACGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACT
ACCAGCGAGAACCGCATGTCTGAAAATGGCCAGTCAAGCACGCCAAGCAC
CGCGGTCGAGGTCCCCAAAGAACGCAAACGCTCGGCCTTCGGCGCGGGAG
GAAAAAATCGATTTCGTCGCAACCTCAAGAAAAACGAACGCAAATACATA
GAGCGGGAGGGGCGGACCTTTGCCGACGCGGCCGGAGCAGCGCACACACA
GCGCGCGGTCGAAAGGGGCGGTGTTGCCGTCGCGCAGAAAGCGCTGGTAG
AAAAGGAGCAGGAGTTGATCGAAAGTAGACAGCGCGAGGCGGCGAGCGCC
GCTGGGTGCAGCATTGCTCAGGAGCTCGTGCGAGAGAGCACCGAGGCGCT
GAAGGAGGAGAAGGCTAAGAGAGAGGAGGCAGAGCGGTCGCACTCGCGTG
TGGGTGCCGAGTGTTTTTGGTTCTGTCGGGGTTCTTCGGAGCGTTCTATG
TGATT

Coding sequence (CDS) from alignment at Scaffold_255:286105..287409-

>EsuBft2421_3a-0001 ID=EsuBft2421_3a-0001|Name=EsuBft2421_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_255:286105..287409- (Ectocarpus subulatus male Bft15b)
ATGCTAGTCTGCGCGGACCAACAACTGTGTAAACTCCCAAACCGACCACT
GGGAGAGAAAGATGGGCACGAGTGTCGCCTTGGCTGCGGTGGCAGGCTTC
ATGGGATATGTGGTGAACCAGAGGAGGAGGGCGGCCAAGAAATACACCGC
GTCTGCAACCCGTGCATCGCCAAGAAGCAGAAGACACCCGGCTCCTCGAA
ACAGCCTAAGCGTGCCTCGCCCGAATCCGAACTTGCCGGAGATGGCGCCG
CGGCGAAAAAGACCAAGCCAGCCGGGAAAGCAGCCGGGAAAGCGGGAAAA
TCGACGCGCACGCGGCTCAACTTCGGCCAGCAGCTTGAGGTTCTCAAGCT
CTTGGACGAGAAGACGACGNNN