EsuBft2421_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2421_2a-0001
Unique Name	EsuBft2421_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:300396..302949 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2421_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	208
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_2a	EsuBft2421_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 300396..302949 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_2a-0001	EsuBft2421_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 302604..302753 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_2a-0001-exon	agat-exon-19589	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 300396..301329 -
EsuBft2421_2a-0001-exon	EsuBft2421_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 301799..302949 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_2a-0001-exon	agat-three_prime_utr-9765	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 300396..301329 -
EsuBft2421_2a-0001-exon	agat-three_prime_utr-9766	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 301799..302603 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_2a-0001-cds	EsuBft2421_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 302604..302753 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2421_2a-0001-exon	agat-five_prime_utr-6266	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 302754..302949 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:300396..302949-
coding sequence from alignment at Scaffold_255:300396..302949-

spliced messenger RNA

>EsuBft2421_2a-0001 ID=EsuBft2421_2a-0001|Name=EsuBft2421_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2085bp|location=Sequence derived from alignment at Scaffold_255:300396..302949- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTAAAGAACACGCACACATCTGACGAGAAAAAGGTATGCAAGAGCCCGA
AGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTG
AACTGCACGTCCGTCCCACCGTTCGACTACAGCAGTAGCATCACCCCCTC
CCTGTCCCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATAATGC
TGTCTGAAGTGCTGTCTGTACAAAAACACCATGGTAGGCATGGAACAAGC
AGCTGGCGGGGCACAAAGCTGCTGTCTGAAGTGCTGTCAGAATGTGTCTG
CGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACGCGCATG
CCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAG
GGTAGACCTCAGGCGAGATTACAAACTCGCTTCGCTCGAATAATGGGTGG
TTGCGTTGCATGCATTATACAGTGCTGCAACTCTACCCGCCTTTGGAGAT
TCGAGCTCGCGACACGGGCGTTGACATCGAGACTAGCCCGCTCCAGCGGG
GGACGATTGGCGAAAGAAAAGTTTTAGGGCAACCAACCGCAGACGGATGA
ACCGAAAGAAAGCGTCTTGATTTTAGAGTGCAAAATTAGTTGAACTCTTT
GCGTGTCAGGGCTCAGGAGTAATGTTAGTTGAGTCTATTGGGGTCTTCCA
ACCAACGAGCTATAGACTACATAGAGCGACTATTAGGCTCATCCCCCGTA
GGCGATGTTGTTTTTTTTTTTCCGGCGTTTCACGGATATTTTCGGCGATT
TTTTTTTAATGCCGAAAACGCGACTTTTTCGGCGACTTTCGGCGACTTCC
ACATGTTTTCGGCGACTCATAGTTCAGTTACGGCGATTGTTGACGATTTT
CGGCGACGTACTAGCATGTACTTCCAGTAACACAAACGAGCGGGTCGCGA
TGCGGTTGGACTGCCGCGGACGCCACCTGCCACCTGTCCGCGAAAAGCGA
ATGATGTGCCCTTCGTCCTTCTCTTATTTTTCCACAAACTACATCTTGCA
TGTTACGCTGGTGTGTGTGTACATGCAATAATCCGAGCCCTCAGTTATCA
AAAAAATCAACAACGAAATGGAATACTATGATGCTCCGATACTTCGACGT
TACGCATGCCATGCACGCTCACGTCCGGGCAAAAACAAACAAATCTGGAC
AGGTACTGACCCACCAACTGAACTACGAACAAGTAAGACATCTACACGAA
AGTGAAACACAGGCCATCAGTCGTTGTCTTCATCGCTGCCATTCCTCTGA
TCGCTACCGCCGCCGCTGTTGGCATCTTCGGCGCC

protein sequence of EsuBft2421_2a-0001

>EsuBft2421_2 ID=EsuBft2421_2|Name=EsuBft2421_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MLSEVLSVQKHHGRHGTSSWRGTKLLSEVLSECVCGXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_255:300396..302949-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2421_2a-0001 ID=EsuBft2421_2a-0001|Name=EsuBft2421_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2554bp|location=Sequence derived from alignment at Scaffold_255:300396..302949- (Ectocarpus subulatus male Bft15b)
TCTAAAGAACACGCACACATCTGACGAGAAAAAGGTATGCAAGAGCCCGA
AGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTG
AACTGCACGTCCGTCCCACCGTTCGACTACAGCAGTAGCATCACCCCCTC
CCTGTCCCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATAATGC
TGTCTGAAGTGCTGTCTGTACAAAAACACCATGGTAGGCATGGAACAAGC
AGCTGGCGGGGCACAAAGCTGCTGTCTGAAGTGCTGTCAGAATGTGTCTG
CGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACGCGCATG
CCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAG
GGTGAGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCCTTCACTACAACCC
ATGTCTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAGAAGGGATGTGCAC
TTGCAGAAAAGTGCACATCTGAAGAAGTCGATTGCGCGATTCTTCTATTC
GTTCAGATGCCATGAGTTCAATCGTCATGAGCTCACAGCAGGCACATACA
CCCTTTATTTCGGTGGCCACTGTACATTGTCGCCCGCTGTGCCCGCTCTA
CCCGCTGTGGGTTTGTCGCTGTGCCCGCCCAGCGTGTGTTGTGCGTTGTG
TGTGTGTGCCGGTGTGTGTGTGTTCTGCTGCTGCGATCCGCTGTGTGCTC
CGCAAAAGAAAAAAATGCGTGCGGTGTGCTGACCCCCCTTTAAAATCAAG
TCATGTAGTCTAAAACCTAGAAAAAGAGTAGACACACATTTTTTTTTTTG
GATGGAGCCCCATGTTGCAGGTAGACCTCAGGCGAGATTACAAACTCGCT
TCGCTCGAATAATGGGTGGTTGCGTTGCATGCATTATACAGTGCTGCAAC
TCTACCCGCCTTTGGAGATTCGAGCTCGCGACACGGGCGTTGACATCGAG
ACTAGCCCGCTCCAGCGGGGGACGATTGGCGAAAGAAAAGTTTTAGGGCA
ACCAACCGCAGACGGATGAACCGAAAGAAAGCGTCTTGATTTTAGAGTGC
AAAATTAGTTGAACTCTTTGCGTGTCAGGGCTCAGGAGTAATGTTAGTTG
AGTCTATTGGGGTCTTCCAACCAACGAGCTATAGACTACATAGAGCGACT
ATTAGGCTCATCCCCCGTAGGCGATGTTGTTTTTTTTTTTCCGGCGTTTC
ACGGATATTTTCGGCGATTTTTTTTTAATGCCGAAAACGCGACTTTTTCG
GCGACTTTCGGCGACTTCCACATGTTTTCGGCGACTCATAGTTCAGTTAC
GGCGATTGTTGACGATTTTCGGCGACGTACTAGCATGTACTTCCAGTAAC
ACAAACGAGCGGGTCGCGATGCGGTTGGACTGCCGCGGACGCCACCTGCC
ACCTGTCCGCGAAAAGCGAATGATGTGCCCTTCGTCCTTCTCTTATTTTT
CCACAAACTACATCTTGCATGTTACGCTGGTGTGTGTGTACATGCAATAA
TCCGAGCCCTCAGTTATCAAAAAAATCAACAACGAAATGGAATACTATGA
TGCTCCGATACTTCGACGTTACGCATGCCATGCACGCTCACGTCCGGGCA
AAAACAAACAAATCTGGACAGGTACTGACCCACCAACTGAACTACGAACA
AGTAAGACATCTACACGAAAGTGAAACACAGGCCATCAGTCGTTGTCTTC
ATCGCTGCCATTCCTCTGATCGCTACCGCCGCCGCTGTTGGCATCTTCGG
CGCC

Coding sequence (CDS) from alignment at Scaffold_255:300396..302949-

>EsuBft2421_2a-0001 ID=EsuBft2421_2a-0001|Name=EsuBft2421_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_255:300396..302949- (Ectocarpus subulatus male Bft15b)
ATGCTGTCTGAAGTGCTGTCTGTACAAAAACACCATGGTAGGCATGGAAC
AAGCAGCTGGCGGGGCACAAAGCTGCTGTCTGAAGTGCTGTCAGAATGTG
TCTGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN