EsuBft2377_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2377_4a-0001
Unique Name	EsuBft2377_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:263310..264706 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2377_4
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	139
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_4a	EsuBft2377_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 263310..264706 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_4a-0001-exon	EsuBft2377_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 263310..264706 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_4a-0001-exon	agat-three_prime_utr-9587	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 263310..263438 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_4a-0001-cds	EsuBft2377_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 263439..264686 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_4a-0001-exon	agat-five_prime_utr-6142	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 264687..264706 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_4a-0001	EsuBft2377_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 263439..264686 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:263310..264706-
coding sequence from alignment at Scaffold_255:263310..264706-

spliced messenger RNA

>EsuBft2377_4a-0001 ID=EsuBft2377_4a-0001|Name=EsuBft2377_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1397bp|location=Sequence derived from alignment at Scaffold_255:263310..264706- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCGCGCCCAGCTGGATAAGATGGGAGAACCCATCTCCGACAGCCGCTTC
AAGGACATCTGCGTACATGGCTTCTCCGACGACTATAAGGACGTCAAACT
GATGGTGTTCAGGGACCCGAACTTCAACGTCCTGGACATGCAATTCACCA
TGCGCAACATCGTTTTGGACGAACAATCGCGCAAGGGATGGAGGGGACGC
ATAGCTGGTCGAGGATTTGCCATGGCAACGACCGCGTCTGACATCATCTG
CCACAGCTGCTACGAGCCGGGGCACATCGGGAGGAACTGCCCCAAGATCA
AGAACAGGGCGAGGAAGAAAACGAAGCCCGCCGGAGCTACCAAGTGGTGC
TCCAAGCACAACACTACGTCTCATTCGGACGAGGGATGCTACCAACAAGG
AGGAAAGCGCCCGGAAGACGCCAAGGACTCAAGTAAAGCATTCACCGCGT
GCTCCGACTGCACTAGCTGCTCGTCGGCGTCCAACAGGAATGACTCAAAC
AATGATGTGGCAGTTGTCGACTTCACCCTGGACGATAACGCCTTCGACAG
CGGCTTCATGATCGCCACGTGTTCCCGCATCTCAGGACGCAACTTCGCCG
CGAACTCCACCGGGGAAGGACTGCTGGTAGACACGGGAGCATCGGAGACC
ATGTTTGACAATCGCCTAATCCCCGACGAAACCCTTCACGATTACACCCA
GCGAAACTCTACAAAGATCGTCGACGTGGCCGGAGAGAGCCAACTCACAG
CCCCGGCCAAGGGCATCCTACACTGCACCGTCGAGGACAACCGAGGACAG
CCACTGCGGGGGTGGATTCAGGGACTCGTCGTTCCGGGGCTTGGTCGCAA
CATTTTTTCGCCCATCTCCCTCCTGAAAAAGGGATTGCCTTGCGTCGTCG
AAGAGAGCCCTCCGCACCTTACTATTCAAGGCAAGGTGATTCCACTCACA
CAAGATCCGCGAGACCAAGGCATGTGCACCGTCGACATCACGTTCGAGCA
GAACGCCCAGCCATCTGGCACGAGATCCCCCGTGCCCCACCAGAAGCAGT
CACAGACCCACACGGCGAACGCGGTCTGCTTTACGCTTGTGAGCGCGGAC
AACTGGCACAAGGGGCTTGGACATCTCAATGCTCGGAGCCTGGACATCCT
CCGGAAGGACACGGGTACCGGGGATGACTATCGCGACAATCTCTCCCCTT
GCGGGGTCTGCCAGATCGCGAAACACAAGCAGTCCTCCCAATTGAAGCAA
TCGACTCGCGAATTATGACGGCCTGGACAACTTGTGGTCATCGACAACAT
GGGGCCTGTCAATTCACTTGCGAAATATACAGGAGGCTACTTCCCGTACG
CGTGCAAGATCACCGACGACTACACGAAAATGAAAGAAGTATACCTG

protein sequence of EsuBft2377_4a-0001

>EsuBft2377_4 ID=EsuBft2377_4|Name=EsuBft2377_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=415bp
MGEPISDSRFKDICVHGFSDDYKDVKLMVFRDPNFNVLDMQFTMRNIVLD
EQSRKGWRGRIAGRGFAMATTASDIICHSCYEPGHIGRNCPKIKNRARKK
TKPAGATKWCSKHNTTSHSDEGCYQQGGKRPEDAKDSSKAFTACSDCTSC
SSASNRNDSNNDVAVVDFTLDDNAFDSGFMIATCSRISGRNFAANSTGEG
LLVDTGASETMFDNRLIPDETLHDYTQRNSTKIVDVAGESQLTAPAKGIL
HCTVEDNRGQPLRGWIQGLVVPGLGRNIFSPISLLKKGLPCVVEESPPHL
TIQGKVIPLTQDPRDQGMCTVDITFEQNAQPSGTRSPVPHQKQSQTHTAN
AVCFTLVSADNWHKGLGHLNARSLDILRKDTGTGDDYRDNLSPCGVCQIA
KHKQSSQLKQSTREL

mRNA from alignment at Scaffold_255:263310..264706-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2377_4a-0001 ID=EsuBft2377_4a-0001|Name=EsuBft2377_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1397bp|location=Sequence derived from alignment at Scaffold_255:263310..264706- (Ectocarpus subulatus male Bft15b)
TTCGCGCCCAGCTGGATAAGATGGGAGAACCCATCTCCGACAGCCGCTTC
AAGGACATCTGCGTACATGGCTTCTCCGACGACTATAAGGACGTCAAACT
GATGGTGTTCAGGGACCCGAACTTCAACGTCCTGGACATGCAATTCACCA
TGCGCAACATCGTTTTGGACGAACAATCGCGCAAGGGATGGAGGGGACGC
ATAGCTGGTCGAGGATTTGCCATGGCAACGACCGCGTCTGACATCATCTG
CCACAGCTGCTACGAGCCGGGGCACATCGGGAGGAACTGCCCCAAGATCA
AGAACAGGGCGAGGAAGAAAACGAAGCCCGCCGGAGCTACCAAGTGGTGC
TCCAAGCACAACACTACGTCTCATTCGGACGAGGGATGCTACCAACAAGG
AGGAAAGCGCCCGGAAGACGCCAAGGACTCAAGTAAAGCATTCACCGCGT
GCTCCGACTGCACTAGCTGCTCGTCGGCGTCCAACAGGAATGACTCAAAC
AATGATGTGGCAGTTGTCGACTTCACCCTGGACGATAACGCCTTCGACAG
CGGCTTCATGATCGCCACGTGTTCCCGCATCTCAGGACGCAACTTCGCCG
CGAACTCCACCGGGGAAGGACTGCTGGTAGACACGGGAGCATCGGAGACC
ATGTTTGACAATCGCCTAATCCCCGACGAAACCCTTCACGATTACACCCA
GCGAAACTCTACAAAGATCGTCGACGTGGCCGGAGAGAGCCAACTCACAG
CCCCGGCCAAGGGCATCCTACACTGCACCGTCGAGGACAACCGAGGACAG
CCACTGCGGGGGTGGATTCAGGGACTCGTCGTTCCGGGGCTTGGTCGCAA
CATTTTTTCGCCCATCTCCCTCCTGAAAAAGGGATTGCCTTGCGTCGTCG
AAGAGAGCCCTCCGCACCTTACTATTCAAGGCAAGGTGATTCCACTCACA
CAAGATCCGCGAGACCAAGGCATGTGCACCGTCGACATCACGTTCGAGCA
GAACGCCCAGCCATCTGGCACGAGATCCCCCGTGCCCCACCAGAAGCAGT
CACAGACCCACACGGCGAACGCGGTCTGCTTTACGCTTGTGAGCGCGGAC
AACTGGCACAAGGGGCTTGGACATCTCAATGCTCGGAGCCTGGACATCCT
CCGGAAGGACACGGGTACCGGGGATGACTATCGCGACAATCTCTCCCCTT
GCGGGGTCTGCCAGATCGCGAAACACAAGCAGTCCTCCCAATTGAAGCAA
TCGACTCGCGAATTATGACGGCCTGGACAACTTGTGGTCATCGACAACAT
GGGGCCTGTCAATTCACTTGCGAAATATACAGGAGGCTACTTCCCGTACG
CGTGCAAGATCACCGACGACTACACGAAAATGAAAGAAGTATACCTG

Coding sequence (CDS) from alignment at Scaffold_255:263310..264706-

>EsuBft2377_4a-0001 ID=EsuBft2377_4a-0001|Name=EsuBft2377_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1248bp|location=Sequence derived from alignment at Scaffold_255:263310..264706- (Ectocarpus subulatus male Bft15b)
ATGGGAGAACCCATCTCCGACAGCCGCTTCAAGGACATCTGCGTACATGG
CTTCTCCGACGACTATAAGGACGTCAAACTGATGGTGTTCAGGGACCCGA
ACTTCAACGTCCTGGACATGCAATTCACCATGCGCAACATCGTTTTGGAC
GAACAATCGCGCAAGGGATGGAGGGGACGCATAGCTGGTCGAGGATTTGC
CATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGG
GGCACATCGGGAGGAACTGCCCCAAGATCAAGAACAGGGCGAGGAAGAAA
ACGAAGCCCGCCGGAGCTACCAAGTGGTGCTCCAAGCACAACACTACGTC
TCATTCGGACGAGGGATGCTACCAACAAGGAGGAAAGCGCCCGGAAGACG
CCAAGGACTCAAGTAAAGCATTCACCGCGTGCTCCGACTGCACTAGCTGC
TCGTCGGCGTCCAACAGGAATGACTCAAACAATGATGTGGCAGTTGTCGA
CTTCACCCTGGACGATAACGCCTTCGACAGCGGCTTCATGATCGCCACGT
GTTCCCGCATCTCAGGACGCAACTTCGCCGCGAACTCCACCGGGGAAGGA
CTGCTGGTAGACACGGGAGCATCGGAGACCATGTTTGACAATCGCCTAAT
CCCCGACGAAACCCTTCACGATTACACCCAGCGAAACTCTACAAAGATCG
TCGACGTGGCCGGAGAGAGCCAACTCACAGCCCCGGCCAAGGGCATCCTA
CACTGCACCGTCGAGGACAACCGAGGACAGCCACTGCGGGGGTGGATTCA
GGGACTCGTCGTTCCGGGGCTTGGTCGCAACATTTTTTCGCCCATCTCCC
TCCTGAAAAAGGGATTGCCTTGCGTCGTCGAAGAGAGCCCTCCGCACCTT
ACTATTCAAGGCAAGGTGATTCCACTCACACAAGATCCGCGAGACCAAGG
CATGTGCACCGTCGACATCACGTTCGAGCAGAACGCCCAGCCATCTGGCA
CGAGATCCCCCGTGCCCCACCAGAAGCAGTCACAGACCCACACGGCGAAC
GCGGTCTGCTTTACGCTTGTGAGCGCGGACAACTGGCACAAGGGGCTTGG
ACATCTCAATGCTCGGAGCCTGGACATCCTCCGGAAGGACACGGGTACCG
GGGATGACTATCGCGACAATCTCTCCCCTTGCGGGGTCTGCCAGATCGCG
AAACACAAGCAGTCCTCCCAATTGAAGCAATCGACTCGCGAATTATGA