EsuBft2377_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2377_3a-0001
Unique Name	EsuBft2377_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:261141..262847 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	35725.K2R419
ProteomeId	EsuBft2377_3
Protein domains	Coil
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	4751\|Fungi
Length	1371
Hectar predicted targeting category	other localisation
Evalue	6.51e-23
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3QNZW@4890\|Ascomycota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	retrotransposon
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_3a	EsuBft2377_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 261141..262847 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_3a-0001-exon	agat-exon-54296	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 261141..261708 -
EsuBft2377_3a-0001-exon	agat-exon-54295	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 261905..262354 -
EsuBft2377_3a-0001-exon	EsuBft2377_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 262495..262847 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_3a-0001-cds	EsuBft2377_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 261141..261708 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2377_3a-0001	EsuBft2377_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 261141..262847 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:261141..262847-
coding sequence from alignment at Scaffold_255:261141..262847-

spliced messenger RNA

>EsuBft2377_3a-0001 ID=EsuBft2377_3a-0001|Name=EsuBft2377_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1371bp|location=Sequence derived from alignment at Scaffold_255:261141..262847- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTTCGGCCTCGACAGCCAGACCTACAGGGTGTTCAATCCATCCA
AAGGGGCCGTGGTCGAGAGCCGGAATATGACTTTCATCGAATCTCCACCC
CGGTCAGTACCATTCCAGCTTCCACTGAAGCAAACGGGTACGAGAGCGAC
GTGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCACTCGACGAGCGACCT
GGACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAAGTCCGGAAGATGC
AGCAAGACAATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGATGAGAAC
GAGGGCGAACATGGAAACGGGCAAGATCTCAGCGACGGGGACGCCCCATC
AAGAGCTAGCACGCGCGGGAGGCTCACCAGCGACGATCAGATCGACGTGA
ACTTGCTTCTTGCCGATCTGCAAGTCTCCATGAACGACCGCGGTCGAGCC
CATGCTGCAACGGGCCGTGTGGAGTTATCCGGCCTTTCCTTCACTCAGCT
GGCTGAGATAGCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGG
ATTTCGCCCACGTGGCGGAAGACCCCTTCACGGTGCCGCTTGCTCACGCC
TACGTCACGACCACTCATGACCACCACGGGATCTTGGAGAAGACGAATCA
AGCGATCGAAATCCCCAACAACTACGACGAAGCCATGAGCTCTCCCCAGC
GCGAAGAATGGCAAGGAGCGTGCAGCAACGAAATGCACAATCTGCGGAAA
CACAACGTCTACAATCTGGTGCCCCTCAGTAGCGTTCCCAAGGTTCTGGA
ACGCAACCCAGCGCAACTGAACATGCCAGCAGCCAAGCACGTTCTGCGAT
ACCTGCGGGGTAATCCAGTTGTTCCTATCGTCCACAGGAGAGGACAGTTT
CGGCTAGCGGCTTTTACGGATTCATCCATCGGAGCAAACCCCGACAACGG
AAGATCTACCACGGGATATCTCTTCTTCCTGGCTGGAGGACTCATCAGCT
ACGGTGCGATTACTCAAACTCTAACCGCGCAAAGCACAGTCGAAGCCAAG
ACTCAAGCACTTAGCTACTCAGCCAGAGAGGCGGTCCATATATCACATTT
TATGACGGAACTCAACTTCAAGACCTTCGAATCGGTTCCCATCAACAGCG
ACAGCACTGGAGCGCTGACAGTAGTGGCCGGGAATGCCATGCACTCTCAA
CGAACGAAGCACATGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACT
GCGGGGACAAGTCACTCTTCACCGGCCCAGCGAGCACCAGTTGGCTGATA
TCGCGACCAAGCACCTACCAAAGCACCGATTCGCCCCCATCATTCAACAG
ATCAAGGACTTCTCGTGTTGA

protein sequence of EsuBft2377_3a-0001

>EsuBft2377_3 ID=EsuBft2377_3|Name=EsuBft2377_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=456bp
MWFRPRQPDLQGVQSIQRGRGREPEYDFHRISTPVSTIPASTEANGYESD
VLSFTSLLDSPHSTSDLDFTAQNELLRQEVRKMQQDNLAREKLRLELDEN
EGEHGNGQDLSDGDAPSRASTRGRLTSDDQIDVNLLLADLQVSMNDRGRA
HAATGRVELSGLSFTQLAEIADQAQLPCPGDTEDFAHVAEDPFTVPLAHA
YVTTTHDHHGILEKTNQAIEIPNNYDEAMSSPQREEWQGACSNEMHNLRK
HNVYNLVPLSSVPKVLERNPAQLNMPAAKHVLRYLRGNPVVPIVHRRGQF
RLAAFTDSSIGANPDNGRSTTGYLFFLAGGLISYGAITQTLTAQSTVEAK
TQALSYSAREAVHISHFMTELNFKTFESVPINSDSTGALTVVAGNAMHSQ
RTKHMALRYFFIRELVLRGQVTLHRPSEHQLADIATKHLPKHRFAPIIQQ
IKDFSC

mRNA from alignment at Scaffold_255:261141..262847-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2377_3a-0001 ID=EsuBft2377_3a-0001|Name=EsuBft2377_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1707bp|location=Sequence derived from alignment at Scaffold_255:261141..262847- (Ectocarpus subulatus male Bft15b)
ATGTGGTTTCGGCCTCGACAGCCAGACCTACAGGGTGTTCAATCCATCCA
AAGGGGCCGTGGTCGAGAGCCGGAATATGACTTTCATCGAATCTCCACCC
CGGTCAGTACCATTCCAGCTTCCACTGAAGCAAACGGGTACGAGAGCGAC
GTGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCACTCGACGAGCGACCT
GGACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAAGTCCGGAAGATGC
AGCAAGACAATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGATGAGAAC
GAGGGCGAACATGGAAACGGGCAAGATCTCAGCGACGGGGACGCCCCATC
AAGGTATCTCTCATCGACGCCAGCTGGGCCGTCATCCGAAAAACCCACGC
ATCCAGCCCCAGCCCATCATCGTCGAACCCGTCTGAACCGCACACTTCTG
CATCAACTGGGTCCTTCGGCATGCGGCGCCTGCAAGTCACCAGAGCTAGC
ACGCGCGGGAGGCTCACCAGCGACGATCAGATCGACGTGAACTTGCTTCT
TGCCGATCTGCAAGTCTCCATGAACGACCGCGGTCGAGCCCATGCTGCAA
CGGGCCGTGTGGAGTTATCCGGCCTTTCCTTCACTCAGCTGGCTGAGATA
GCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTTCGCCCA
CGTGGCGGAAGACCCCTTCACGGTGCCGCTTGCTCACGCCTACGTCACGA
CCACTCATGACCACCACGGGATCTTGGAGAAGACGAATCAAGCGATCGAA
ATCCCCAACAACTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAATG
GCAAGGAGCGTGCAGCAACGAAATGCACAATCTGCGGAAACACAACGTCT
ACAATCTGGTGCCCCTCAGTAGCGTTCCCAAGGTTCTGGAACGGTTCGGA
ATGCAAGAGGCCAACCCAGTGAGCACTCCTGGATACGGAACGGAAATTTC
CACGAATCAACCTCAGGACCAAATCCTAGGACGCACGGACAAGAAAATCT
ACCAGTTGATTACAGGAAGCACCCTACCTGGCCCAGTGCACGCGATTCGA
CCCCTCTTACGCGGCCCTACAACTGTCCAAGGCCTGCAGCAACCCAGCGC
AACTGAACATGCCAGCAGCCAAGCACGTTCTGCGATACCTGCGGGGTAAT
CCAGTTGTTCCTATCGTCCACAGGAGAGGACAGTTTCGGCTAGCGGCTTT
TACGGATTCATCCATCGGAGCAAACCCCGACAACGGAAGATCTACCACGG
GATATCTCTTCTTCCTGGCTGGAGGACTCATCAGCTACGGTGCGATTACT
CAAACTCTAACCGCGCAAAGCACAGTCGAAGCCAAGACTCAAGCACTTAG
CTACTCAGCCAGAGAGGCGGTCCATATATCACATTTTATGACGGAACTCA
ACTTCAAGACCTTCGAATCGGTTCCCATCAACAGCGACAGCACTGGAGCG
CTGACAGTAGTGGCCGGGAATGCCATGCACTCTCAACGAACGAAGCACAT
GGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACTGCGGGGACAAGTCA
CTCTTCACCGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCAAGCAC
CTACCAAAGCACCGATTCGCCCCCATCATTCAACAGATCAAGGACTTCTC
GTGTTGA

Coding sequence (CDS) from alignment at Scaffold_255:261141..262847-

>EsuBft2377_3a-0001 ID=EsuBft2377_3a-0001|Name=EsuBft2377_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1371bp|location=Sequence derived from alignment at Scaffold_255:261141..262847- (Ectocarpus subulatus male Bft15b)
ATGTGGTTTCGGCCTCGACAGCCAGACCTACAGGGTGTTCAATCCATCCA
AAGGGGCCGTGGTCGAGAGCCGGAATATGACTTTCATCGAATCTCCACCC
CGGTCAGTACCATTCCAGCTTCCACTGAAGCAAACGGGTACGAGAGCGAC
GTGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCACTCGACGAGCGACCT
GGACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAAGTCCGGAAGATGC
AGCAAGACAATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGATGAGAAC
GAGGGCGAACATGGAAACGGGCAAGATCTCAGCGACGGGGACGCCCCATC
AAGAGCTAGCACGCGCGGGAGGCTCACCAGCGACGATCAGATCGACGTGA
ACTTGCTTCTTGCCGATCTGCAAGTCTCCATGAACGACCGCGGTCGAGCC
CATGCTGCAACGGGCCGTGTGGAGTTATCCGGCCTTTCCTTCACTCAGCT
GGCTGAGATAGCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGG
ATTTCGCCCACGTGGCGGAAGACCCCTTCACGGTGCCGCTTGCTCACGCC
TACGTCACGACCACTCATGACCACCACGGGATCTTGGAGAAGACGAATCA
AGCGATCGAAATCCCCAACAACTACGACGAAGCCATGAGCTCTCCCCAGC
GCGAAGAATGGCAAGGAGCGTGCAGCAACGAAATGCACAATCTGCGGAAA
CACAACGTCTACAATCTGGTGCCCCTCAGTAGCGTTCCCAAGGTTCTGGA
ACGCAACCCAGCGCAACTGAACATGCCAGCAGCCAAGCACGTTCTGCGAT
ACCTGCGGGGTAATCCAGTTGTTCCTATCGTCCACAGGAGAGGACAGTTT
CGGCTAGCGGCTTTTACGGATTCATCCATCGGAGCAAACCCCGACAACGG
AAGATCTACCACGGGATATCTCTTCTTCCTGGCTGGAGGACTCATCAGCT
ACGGTGCGATTACTCAAACTCTAACCGCGCAAAGCACAGTCGAAGCCAAG
ACTCAAGCACTTAGCTACTCAGCCAGAGAGGCGGTCCATATATCACATTT
TATGACGGAACTCAACTTCAAGACCTTCGAATCGGTTCCCATCAACAGCG
ACAGCACTGGAGCGCTGACAGTAGTGGCCGGGAATGCCATGCACTCTCAA
CGAACGAAGCACATGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACT
GCGGGGACAAGTCACTCTTCACCGGCCCAGCGAGCACCAGTTGGCTGATA
TCGCGACCAAGCACCTACCAAAGCACCGATTCGCCCCCATCATTCAACAG
ATCAAGGACTTCTCGTGTTGA