EsuBft2361_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2361_7a-0001
Unique NameEsuBft2361_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:377082..378807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFI2
ProteomeIdEsuBft2361_7
Protein domainsPTHR24064
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsIPR020846
Protein domainsG3DSA
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length65
Hectar predicted targeting categoryother localisation
Evalue1.78e-69
EggNOG OGsKOG0253@1|root,KOG0253@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionN-methylnicotinate transmembrane transporter activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_7aEsuBft2361_7aEctocarpus subulatus male Bft15bgeneScaffold_499 377082..378807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_7a-0001-exonagat-exon-107606Ectocarpus subulatus male Bft15bexonScaffold_499 377082..377195 -
EsuBft2361_7a-0001-exonagat-exon-107605Ectocarpus subulatus male Bft15bexonScaffold_499 377540..377852 -
EsuBft2361_7a-0001-exonEsuBft2361_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 378416..378613 -
EsuBft2361_7a-0001-exonagat-exon-107604Ectocarpus subulatus male Bft15bexonScaffold_499 378776..378807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_7a-0001-cdsEsuBft2361_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 377082..377195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_7a-0001EsuBft2361_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 377082..378807 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2361_7a-0001 ID=EsuBft2361_7a-0001|Name=EsuBft2361_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=657bp|location=Sequence derived from alignment at Scaffold_499:377082..378807- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCACAGGCGTTTTCTTTTGGGTGCAGCGAACTGGTGGCAAACGT
CCTGTCGAGGTTCTACGTGGATCGTTTCGACCGGCGACTGAGCATGTCGA
TCAACTTCACGGTTTCGGCAGTGATGACGGTCCTGATGCCGGTCAACAGC
GCGATGGCGTGGCTCCTGGTGACGTCCTTCTTCGCCAGAGGGGCGTCGTA
CGTGTCCTCTTGCATGGCGTGGGTAGTGACGCCTGAGCTTTACCCAACCC
AGATTAGGTCGACGGGGCACGCCTTGAGCAATGCCCTTGGGCTGTGCGGG
GCTATCGGGGCGTCGTATTGGGTGGCGACGCCCTTCTCCAACGAAGTTAT
CGCGATCGGACTGTGCGTCGTCGGCATCATCGGTGGGATCACCGCTCAGG
CGAGGAAAAGGCTTTTCCTGTGCTGCCTACATACCTCGGAACTTCGAACC
CCATTTCACATAACAAACCATGCTGTCATGAAGTACATGGGCAAGAAAAC
GCTTCGGACTTGGAACTGCTTTCACACCACGCCATGCTGTCATGCGCTGC
CAAGCGGCCACCGCCCGGAGTTCGATGACGACGGAGGTGTCTCGGATGAT
GACGAATCGAGGCCATTGTTGCAAAACCCGGTGGATATTCAGCGAGGGGA
GTTATAG
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protein sequence of EsuBft2361_7a-0001

>EsuBft2361_7 ID=EsuBft2361_7|Name=EsuBft2361_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MTSQAFSFGCSELVANVLSRFYVDRFDRRLSMSINFTVSAVMTVLMPVNS
AMAWLLVTSFFARGASYVSSCMAWVVTPELYPTQIRSTGHALSNALGLCG
AIGASYWVATPFSNEVIAIGLCVVGIIGGITAQARKRLFLCCLHTSELRT
PFHITNHAVMKYMGKKTLRTWNCFHTTPCCHALPSGHRPEFDDDGGVSDD
DESRPLLQNPVDIQRGEL
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mRNA from alignment at Scaffold_499:377082..378807-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2361_7a-0001 ID=EsuBft2361_7a-0001|Name=EsuBft2361_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1726bp|location=Sequence derived from alignment at Scaffold_499:377082..378807- (Ectocarpus subulatus male Bft15b)
ATGACGTCACAGGCGTTTTCTTTTGGGTGCAGGTCGCCCTTGGATCCGCA
AGAAGGTCCGTGTTTGCCTATGGTGACCAATCACTGAGGCGTCCTATCGT
GTTCCAACTTCACTCCATGTCCTCTTACCGCCTGAGGCTGAGCCACTACC
TACCGCCCCCGCCCCCTCCGGGTCTGTCTGTTACCCCCTCTCAGCGAACT
GGTGGCAAACGTCCTGTCGAGGTTCTACGTGGATCGTTTCGACCGGCGAC
TGAGCATGTCGATCAACTTCACGGTTTCGGCAGTGATGACGGTCCTGATG
CCGGTCAACAGCGCGATGGCGTGGCTCCTGGTGACGTCCTTCTTCGCCAG
AGGGGCGTCGTACGTGTCCTCTTGCATGGCGTGGGTAGTGACGTGAGTCC
TTGCTTTGCTTTCCGGGAAGGGGTGCGTGGTGTACGCGCTCGTTGCTTGT
CTTAGAGACCATCGAGCACGCGAGAGCCCAGATCACGGCAGAAGCGTAGC
TTTCCAAAAAATGTGGAGCCCGTTTCTTGACCGTGACGATCTAGACTGTT
TCCTATCGTGTGTGTTTTTGCTCGTGGTGTACCGTCTCCCATCATGACTC
CAGTCGATCGGTATACCTCATGTACTGATATATTCACTTCCATACGACGG
TGCATGCGTGCAGTCATCCCTGGGGGTCACAAGGCACGCCGTTGAGATAG
AACGGGTCGGGCACCCGATACTGGCATTTTTTTTACAGGTTTGCTCGGTA
ACTCAGCTAAGTTTACCGTGTATTACATTCGCGGCGTCCCCTGTGGGGGG
TGAGGGGAGTACTCACGTAAACGTGGTATGTTGTAGTCGTTGGACCATTG
ACCTGGGACATGTGTGTGCGGCGGGGGGGATATACGTGTGTCCAACCGTC
GCCTATGTACGCTACAGCCGCCCCTCCTCCCCCAATGTCCTATACCTCGA
TTCAGGCCTGAGCTTTACCCAACCCAGATTAGGTCGACGGGGCACGCCTT
GAGCAATGCCCTTGGGCTGTGCGGGGCTATCGGGGCGTCGTATTGGGTGG
CGACGCCCTTCTCCAACGAAGTTATCGCGATCGGACTGTGCGTCGTCGGC
ATCATCGGTGGGATCACCGCTCAGGCGAGGAAAAGGCTTTTCCTGTGCTG
CCTACATACCTCGGAACTTCGAACCCCATTTCACATAACAAACCATGCTG
TCATGAAGTACATGGGCAAGAAAACGCTTCGGACTTGGAACTGCTTTCAC
ACCACGCCATGCTGTCATGTACATATGCGGCACACCCCGTGAGGTTCGAA
CCGCTTTACATCCGCTGTCGTTATGTCCAAGAGAGGTCATATCCCGCTTC
GTAACGAACCATGACCTGGTCCCCTTTTCCGGTTCTGTTGTGTTTTCCAT
TTGTCCCGCCGACTTTCGCGTCAACTCGGCTTGGTTGTTTCTCAGGCGGT
GCTGCTTGCCAAGCACGAAGGCTTGGGACCAGGGAAAAGAGTCACCTTGG
TTGTTTTCGACCCTCAGCTTTTGCAATCAATGCACAGGCTCACAACACTG
ACAGTGCCCCCCCCCCCACCGCTGTTCTTCCGCTTGCGTTGATGGCTTTT
GTCTCAGAACAGGCGCTGCCAAGCGGCCACCGCCCGGAGTTCGATGACGA
CGGAGGTGTCTCGGATGATGACGAATCGAGGCCATTGTTGCAAAACCCGG
TGGATATTCAGCGAGGGGAGTTATAG
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Coding sequence (CDS) from alignment at Scaffold_499:377082..378807-

>EsuBft2361_7a-0001 ID=EsuBft2361_7a-0001|Name=EsuBft2361_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_499:377082..378807- (Ectocarpus subulatus male Bft15b)
ATGACGTCACAGGCGTTTTCTTTTGGGTGCAGCGAACTGGTGGCAAACGT
CCTGTCGAGGTTCTACGTGGATCGTTTCGACCGGCGACTGAGCATGTCGA
TCAACTTCACGGTTTCGGCAGTGATGACGGTCCTGATGCCGGTCAACAGC
GCGATGGCGTGGCTCCTGGTGACGTCCTTCTTCGCCAGAGGGGCGTCGTA
CGTGTCCTCTTGCATGGCGTGGGTAGTGACGCCTGAGCTTTACCCAACCC
AGATTAGGTCGACGGGGCACGCCTTGAGCAATGCCCTTGGGCTGTGCGGG
GCTATCGGGGCGTCGTATTGGGTGGCGACGCCCTTCTCCAACGAAGTTAT
CGCGATCGGACTGTGCGTCGTCGGCATCATCGGTGGGATCACCGCTCAGG
CGAGGAAAAGGCTTTTCCTGTGCTGCCTACATACCTCGGAACTTCGAACC
CCATTTCACATAACAAACCATGCTGTCATGAAGTACATGGGCAAGAAAAC
GCTTCGGACTTGGAACTGCTTTCACACCACGCCATGCTGTCATGCGCTGC
CAAGCGGCCACCGCCCGGAGTTCGATGACGACGGAGGTGTCTCGGATGAT
GACGAATCGAGGCCATTGTTGCAAAACCCGGTGGATATTCAGCGAGGGGA
GTTATAG
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