EsuBft2361_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2361_6a-0001
Unique NameEsuBft2361_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:371096..371385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2361_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length29
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_6aEsuBft2361_6aEctocarpus subulatus male Bft15bgeneScaffold_499 371096..371385 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_6a-0001-exonEsuBft2361_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 371096..371385 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_6a-0001-exonagat-five_prime_utr-6105Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 371096..371118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_6a-0001-cdsEsuBft2361_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 371119..371316 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_6a-0001-exonagat-three_prime_utr-9523Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 371317..371385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_6a-0001EsuBft2361_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 371119..371316 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2361_6a-0001 ID=EsuBft2361_6a-0001|Name=EsuBft2361_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=290bp|location=Sequence derived from alignment at Scaffold_499:371096..371385+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCTCAACACACCGCCGTTTTTCATGGTCGCAAAAATCGCCGCCGTGTGT
GCTTGTTATTTGTCCGTTTCACAGGCTTCGAAAGAGCAGCAGTACGCCGG
CGAGATCAGCACCCACTTTGCAGTTCTCCTGCAGGTGGGAGATGGCCGCT
GCTTGATTCTCGAGCGCCGGGGGGAGGGCGGTGTGACCGCTTCCGATGTC
CACCCCTCCCAGGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft2361_6a-0001

>EsuBft2361_6 ID=EsuBft2361_6|Name=EsuBft2361_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=66bp
MVAKIAAVCACYLSVSQASKEQQYAGEISTHFAVLLQVGDGRCLILERRG
EGGVTASDVHPSQVKX
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mRNA from alignment at Scaffold_499:371096..371385+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2361_6a-0001 ID=EsuBft2361_6a-0001|Name=EsuBft2361_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=290bp|location=Sequence derived from alignment at Scaffold_499:371096..371385+ (Ectocarpus subulatus male Bft15b)
GTCTCAACACACCGCCGTTTTTCATGGTCGCAAAAATCGCCGCCGTGTGT
GCTTGTTATTTGTCCGTTTCACAGGCTTCGAAAGAGCAGCAGTACGCCGG
CGAGATCAGCACCCACTTTGCAGTTCTCCTGCAGGTGGGAGATGGCCGCT
GCTTGATTCTCGAGCGCCGGGGGGAGGGCGGTGTGACCGCTTCCGATGTC
CACCCCTCCCAGGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_499:371096..371385+

>EsuBft2361_6a-0001 ID=EsuBft2361_6a-0001|Name=EsuBft2361_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_499:371096..371385+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCAAAAATCGCCGCCGTGTGTGCTTGTTATTTGTCCGTTTCACA
GGCTTCGAAAGAGCAGCAGTACGCCGGCGAGATCAGCACCCACTTTGCAG
TTCTCCTGCAGGTGGGAGATGGCCGCTGCTTGATTCTCGAGCGCCGGGGG
GAGGGCGGTGTGACCGCTTCCGATGTCCACCCCTCCCAGGTAAAGNNN
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