EsuBft2361_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2361_3a-0001
Unique NameEsuBft2361_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:361351..362947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFH4
ProteomeIdEsuBft2361_3
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length159
Hectar predicted targeting categorysignal peptide
Evalue2.71e-06
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameDHRS1
KEGG rclassRC00029,RC00117
KEGG koko:K00059,ko:K08141,ko:K11163,ko:K13237
KEGG TC2.A.1.1
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,ko04146,map00061,map00333,map00780,map01040,map01100,map01130,map01212,map04146
KEGG ModuleM00083,M00572
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0012505,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704
EC1.1.1.100,1.3.1.34
Descriptionoxidation-reduction process
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_3aEsuBft2361_3aEctocarpus subulatus male Bft15bgeneScaffold_499 361351..362947 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_3a-0001-exonEsuBft2361_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 361351..362947 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_3a-0001-exonagat-three_prime_utr-9520Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 361351..362595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_3a-0001-cdsEsuBft2361_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 362596..362760 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_3a-0001-exonagat-five_prime_utr-6102Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 362761..362947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_3a-0001EsuBft2361_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 362596..362760 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2361_3a-0001 ID=EsuBft2361_3a-0001|Name=EsuBft2361_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1597bp|location=Sequence derived from alignment at Scaffold_499:361351..362947- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACAGCGGCACACCCGCTGCACGCAGCAGCTGCTCTGTCTCCCGCACAGC
GGAAGTACAGCCAGTACCACCTACTCCTTGCCGCGGAGGAGTCTTACAGG
CTGCCCGCTTGCTGGCTGTAGCCCAAAGCATACGCGTGAGGCTGCTCATT
GTCATCCAGGGTCCTCGCCGCGGCCCCTCTAAGCTCCATGACGATGCTGC
TGCTGCTGCGAAAGCCTTGTCGGATTGCCATGGCGACGGTGATCCTTCTC
GCGCCAGAAACAGGCGCCTTCTATACGGTGACACCACCAACCGCCACCAC
CACCAACAGCGCGACCTCGGTGCTCTCAAGACCATCAGCGGCAACCCAGT
AGAGGCATCCTATTTGCAGCACCTGCCGCCGGCGCTCATTGGCTCCACTG
CGCATGGCGGCATCATCGGATGCTGCTGCTGCTGCTGGGGGTGATGATGA
TCTACGAGGCATCGGGAAGGGGATAGCGGTGACACTCGGACAGCATGGGT
GCACGGTCTACGTTACGGGCCGATCTGTTGGGGGCAATACAAAGGACAAG
GCAAGTCGCTCTGGGGTGTCAAGAAAAGGAATGAGCGTTCTTTCGCATGA
TTATTTTTACACTCGTCGTGGGTCTTCGGTGTACAGAAAGCATACATACA
ATATTCCAAGGTTCGGTTCTGTAGGGTACGGGTAATGTCTGTGGGGTATT
GGATCTGTTACAGAACCGGAGGGTAATCTCTGTAGGGTACGGGATGTGCT
ACAGAACTCACAGAAGTGTAGGGTATTGTGGCATGACCGTCACAGAACTC
ACAGAAGTGTTGGGGTATTGTATACAGAACAAGAGGGTAATCTCTGTGGG
GTATCGGGTGTGCTACAGAACTCACAGAAGTGTAGGGTATTGTGGTGCAA
CCGTCACAGAACTCACAGAAGTGTAGGGTATTGCGGCACGACCGTCACAG
AACCCACAGAAGTGTTAGGGTATTGTATACAGACCAAGAGGGTAATCTCT
GTGGGGTACCGTGTGTGCTACAGAACTCACAGAAGTGTAGGGTGCCGTGG
TGCAACCGTCACAGAACTCACAGGGTAGGCTCTGTAGGGTATCTGTAGGG
TAACTACAGACGGTCATTACCCTCGGTACCCGCGCGAGTCTCTGTATTTG
CACACTGCTGTTTGCCTTCGTTCGACTCGGTTTCAAGGTACTAAACCAAG
ACTTGAAAACATGAAGCGTGCTTGCGTACGGCCCCTATATATCCCAGTCC
TCAACTTCCCAGGTGACAGCGGAGGACTACTGCCTAAAAAAAAACATAAA
CATAAACAAAAAGCATTTCACGTTTAGACTATGTTACGTTTTCCTCTACC
CTCTCCACTTCCCAGAGGGGGAAAAACCTGCACGACGAAAAAAAGATCAA
GACTGAAAACCTGAGTGCAAAGGATTTCGTGGTGCGCCCCCACGACTACT
CCTCGCCAGCAGGCAAGGGGCAAACTCCGTTCCCATCCGACTTTTTCCCA
ACACAACAGCAGTAGCGAGAAGCAAAGAGGGGTCTCTCCTGAACCCCCCC
CCCCCCGACAGTCAGTCTACACGCCAATGTCGTTCGCGGTGTTGTTC
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protein sequence of EsuBft2361_3a-0001

>EsuBft2361_3 ID=EsuBft2361_3|Name=EsuBft2361_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MTMLLLLRKPCRIAMATVILLAPETGAFYTVTPPTATTTNSATSVLSRPS
AATQ
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mRNA from alignment at Scaffold_499:361351..362947-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2361_3a-0001 ID=EsuBft2361_3a-0001|Name=EsuBft2361_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1597bp|location=Sequence derived from alignment at Scaffold_499:361351..362947- (Ectocarpus subulatus male Bft15b)
CACAGCGGCACACCCGCTGCACGCAGCAGCTGCTCTGTCTCCCGCACAGC
GGAAGTACAGCCAGTACCACCTACTCCTTGCCGCGGAGGAGTCTTACAGG
CTGCCCGCTTGCTGGCTGTAGCCCAAAGCATACGCGTGAGGCTGCTCATT
GTCATCCAGGGTCCTCGCCGCGGCCCCTCTAAGCTCCATGACGATGCTGC
TGCTGCTGCGAAAGCCTTGTCGGATTGCCATGGCGACGGTGATCCTTCTC
GCGCCAGAAACAGGCGCCTTCTATACGGTGACACCACCAACCGCCACCAC
CACCAACAGCGCGACCTCGGTGCTCTCAAGACCATCAGCGGCAACCCAGT
AGAGGCATCCTATTTGCAGCACCTGCCGCCGGCGCTCATTGGCTCCACTG
CGCATGGCGGCATCATCGGATGCTGCTGCTGCTGCTGGGGGTGATGATGA
TCTACGAGGCATCGGGAAGGGGATAGCGGTGACACTCGGACAGCATGGGT
GCACGGTCTACGTTACGGGCCGATCTGTTGGGGGCAATACAAAGGACAAG
GCAAGTCGCTCTGGGGTGTCAAGAAAAGGAATGAGCGTTCTTTCGCATGA
TTATTTTTACACTCGTCGTGGGTCTTCGGTGTACAGAAAGCATACATACA
ATATTCCAAGGTTCGGTTCTGTAGGGTACGGGTAATGTCTGTGGGGTATT
GGATCTGTTACAGAACCGGAGGGTAATCTCTGTAGGGTACGGGATGTGCT
ACAGAACTCACAGAAGTGTAGGGTATTGTGGCATGACCGTCACAGAACTC
ACAGAAGTGTTGGGGTATTGTATACAGAACAAGAGGGTAATCTCTGTGGG
GTATCGGGTGTGCTACAGAACTCACAGAAGTGTAGGGTATTGTGGTGCAA
CCGTCACAGAACTCACAGAAGTGTAGGGTATTGCGGCACGACCGTCACAG
AACCCACAGAAGTGTTAGGGTATTGTATACAGACCAAGAGGGTAATCTCT
GTGGGGTACCGTGTGTGCTACAGAACTCACAGAAGTGTAGGGTGCCGTGG
TGCAACCGTCACAGAACTCACAGGGTAGGCTCTGTAGGGTATCTGTAGGG
TAACTACAGACGGTCATTACCCTCGGTACCCGCGCGAGTCTCTGTATTTG
CACACTGCTGTTTGCCTTCGTTCGACTCGGTTTCAAGGTACTAAACCAAG
ACTTGAAAACATGAAGCGTGCTTGCGTACGGCCCCTATATATCCCAGTCC
TCAACTTCCCAGGTGACAGCGGAGGACTACTGCCTAAAAAAAAACATAAA
CATAAACAAAAAGCATTTCACGTTTAGACTATGTTACGTTTTCCTCTACC
CTCTCCACTTCCCAGAGGGGGAAAAACCTGCACGACGAAAAAAAGATCAA
GACTGAAAACCTGAGTGCAAAGGATTTCGTGGTGCGCCCCCACGACTACT
CCTCGCCAGCAGGCAAGGGGCAAACTCCGTTCCCATCCGACTTTTTCCCA
ACACAACAGCAGTAGCGAGAAGCAAAGAGGGGTCTCTCCTGAACCCCCCC
CCCCCCGACAGTCAGTCTACACGCCAATGTCGTTCGCGGTGTTGTTC
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Coding sequence (CDS) from alignment at Scaffold_499:361351..362947-

>EsuBft2361_3a-0001 ID=EsuBft2361_3a-0001|Name=EsuBft2361_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_499:361351..362947- (Ectocarpus subulatus male Bft15b)
ATGACGATGCTGCTGCTGCTGCGAAAGCCTTGTCGGATTGCCATGGCGAC
GGTGATCCTTCTCGCGCCAGAAACAGGCGCCTTCTATACGGTGACACCAC
CAACCGCCACCACCACCAACAGCGCGACCTCGGTGCTCTCAAGACCATCA
GCGGCAACCCAGTAG
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