EsuBft2347_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2347_4a-0001
Unique Name	EsuBft2347_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:186814..191254 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2347_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	317
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_4a	EsuBft2347_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 186814..191254 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_4a-0001	EsuBft2347_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 186891..188563 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_4a-0001-exon	EsuBft2347_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 186814..187010 +
EsuBft2347_4a-0001-exon	agat-exon-17730	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 188234..189342 +
EsuBft2347_4a-0001-exon	agat-exon-17729	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 189389..191254 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_4a-0001-exon	agat-five_prime_utr-6052	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_347 186814..186890 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_4a-0001-cds	EsuBft2347_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 186891..187010 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_4a-0001-exon	agat-three_prime_utr-9432	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 188564..189342 +
EsuBft2347_4a-0001-exon	agat-three_prime_utr-9433	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 189389..191254 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:186814..191254+
coding sequence from alignment at Scaffold_347:186814..191254+

spliced messenger RNA

>EsuBft2347_4a-0001 ID=EsuBft2347_4a-0001|Name=EsuBft2347_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3172bp|location=Sequence derived from alignment at Scaffold_347:186814..191254+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNCCCCCCTCTCCCCTCGCTATACCATAGAACCTGCCCCTC
GAGACACTCATCAGTAGGTGCAAGCAAATGTTTGACGATATCAGGACGAG
CAAAGAAAAAGCGGAGAAGGACTCCGAGGGGAAGACCGGGGAGGGCGAGA
AGGACGCTGAGGTGTTCGACGAGGAGAACGAGGAGGGTCCGAGGCAAGAT
TGCGAATTGCTCAAGGCTATGGCATGGCGTGAGGCCGGGATGGCGTCGAA
GAAGAAGGACACAGGCCCGTCGAAGGAGCACATGGCGCAGGGACTGGCGT
TGCGTGACAGTGCCCGCGACGGTTTGCCAGGCCGAGGTGCGACACAGGGT
TTCCCGGTGGTACAACCGGCAGGTGGCAGAGGCAAGGGCGGCAGCAGCAA
CTCCAAGTCCCGTTACTCTGCGGCCGCTGCGGCGAACATCCGGTCCCGGG
GGGAGGACTGTCGGTTCCGACGGGAATCAGAGACCTCTGACGGCGAAGGT
CCTTTCGTTGGCAACCGCACCCGGTGAAGACGAGGAGGAAGAGGAGGAGC
TATCCGACGAACCAGATGCGTGAGACGAAGCCCGGAAGGCGACCCTGTTA
CCAAGCGGCAAGGCTGCGCGGGGGACGAGGAGCGGGAAGAGTGGGGGAAA
GAGGACCCGGTCTGTTCCACCTCTATTCTCCACGATGAGTGGCTCTGCTG
GCCTCCAAAACAGGCTGAGCAGCGTAATCGACTTGGTCCGCCAGAAAATG
ACCGCGCCGGCGGTGCCGACTGTGGGTGGTGGCGAGCAGGGAGGGGCGAG
CAGCAGGACGGAATCGGGTGAGATCAAAGACCTGCTCAAGAGCAGGTGAA
CCAGCAGATCTTCAACGCAATGGGGATGATGCATGGTGGCGTCCAACCGC
ACCCACTCGGGATGCAAGCGGGTGCAGGCGCGCTTCCTCCCTTCGGCGGG
TACGCTGGGTTCGGCGGTAGCGCCGCCTCGGCAGGGCTGGCTCGTTCTGC
AGTTGTCGGAGAACCTCCTCCTGCGCAACCTTCGCAGGGTGCAACCGCGG
CGGGTGCAAGGGCGTTGCCCGTGGTTGCTGGGGGCGGACGAGCCGCACCT
TTTGGTGATGCCTCGTCCGCAGGAGGGGGGGGGGGCGTCTTCCGAGCTTC
GGTGCTTCTTATGGCGGACGAGCGACTGGTGCAACCTCTGCAGTGGCGGC
GGGCGGTGCAGTCCGGGTTAGGGCCCCGCGGAAGGCTGCGCTTACCACGA
GTGGACAGACGCTCTGCGAGTGTGGTCTTCCGGCATCCCACGGGGAGGTG
AAGTCGGGAGTAAGGGAGGTGTTGCGGCATTTCATTGCCGAACTGGTGTC
ATTCTAATGTTGTAGAAACGTCCGCGAATTAGTCCCTCATCAGGTGCGGA
ACCTCCAAAATCCTCCCTCCCCCCCTGCCTCTGTCCATGCGCCTCGTTTC
GGGATTGCACCAGTACGTCCTCGTCGGGTTTAGGGTGTGTTATTTTTTCC
GGCAGGCTTCTTGAACTCTGTTGATGGCGTAGTTGGCTTATGCTTAGGAC
GTTGGCCTATTGCCCGTATGCCCCTCTCGCTCGGCTCTTAGTGCGTTATC
CGCAATCCCTGAGCCCCCCCCCCCCGCCCAAATGCGCTCCGACACATCGA
CACCGCCCTCTTTTCTACATGCGTCTGTGTTTCTGCGTCCTCCACGGCAC
GAAGAAGGGACGAAAGTACGTAACCTGCCCAAGTTCGACCGGAATCAGAT
GTGCAACTTCCACAAGTTCCTCGACCCAGCCGCGCCTATGCCACAGGTTC
AGGCTGAAGGGAAGGCAGCCGAACCGCGTGCGCGGAAGAAGGCTAGGCCC
GGCCACGCGGCCGCGACGATCTCCTCGACGCAGCTGCAGGCGTAACGCCA
AGCCCAAGGCCGAAAGCGTTAGGGTTAGCCTACAAGTACTTGTACGCTCA
GCCGTCTTGTCTCCATGGAACAGCTTTTCGTTCTTTTTCTTTTTTGTTTC
CTCTCTGTTTTTTTTTTTTTCAACTGCGAGTCGTATTGTACTCTGCAACC
GCAGTACGGTTTATTGCCTCTGTCGAAAGCTCATCTGACTCTTGTTGCGT
TGTCCTCTCTTATTTTTATCCTTTTTCGTTTTTTTCTTTCTCGAGGAGGT
TACACTTTAGGTAGGGTAGCAAGGGATGTGGGGTAGACTGTAGGTACGGT
CGATGTTTTGTCGGTCACTTCTGGTGACATGTCGTATTGTCCACGTATAA
AATTATGAGGGGGGGGGTAGGTATATCCGGGAGGTCTTTTCGTCTTGACA
TCGAGATTTCAGGTTTGATTGCAGCTTGTCGTTATCATTGTCTTCGTTAG
CCGTTACAGAGGTTTGTCCTGTCGTTCCCAAACCAGTTCCTTTTTGCAAG
GTCGACGTCACTGCTCGTTTGTGGTCATGTTTGGCCTCAAATATTGGCTG
GGCGCCCAGTGCCTGGAACTGTGGGTCCTTTCGATTCGTTTGCGTTGCCC
ATAGGCAAGTGTTGTTGCCACTAGGGCATGGGTGCCGTTTACGAAACCCA
GTTTGACCTGGTCAGTTCGAGCACGGTACGCACGTGGTTGTGGTGGTGTA
AGTGGCTCCATGTATCGGGCAACTGCTTTTGCTGTGACTTGGTACCGCTC
TTTCCTGTTTGCAGGAGGGTTCGTTCGTAGACCTGTCCTGTCCTGTAGTC
ATCCTTGTCATAACTTGTTGCCCGCAGGGTGTTGGTCTGAGTGCAGTTGC
ACGTCGCTTTGTCGGTGTTTGGTTTTTCGAACTCGGACATGTCGATCTGT
CTACACTTCGGTTGCCCTGCTTCGTTTGTGTCGTGCAGCTGCGTGCACCA
CCGAGAATGTTTTTCGGGCGTGTTGCTCTATGGTTTGGTTTGCGTTGCTG
TTTTTGATTTTAGTCTTGTTTTTTTCAAGTACCTGTGTCCTTTTGGGTTA
ACAACCCGTTTGTCTTGCTATTCTCGTTCGTGGAAGGGCACGTATGTAGG
TTGTCGGCATTTTGTTTCGTTTGATCGCTTGTTCTTGTAGCACATGCCGT
CGTTCTTCTAGCATATGGGTAACTGTTGCCAATTTCCGTTGGAATAAATG
GTTCCGATTTCGTCCGAGAGGTGGCATATGGGGGGGCGATTTGGTGCCTT
AGTAAGATTCTTCTCCGTAGGG

protein sequence of EsuBft2347_4a-0001

>EsuBft2347_4 ID=EsuBft2347_4|Name=EsuBft2347_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=149bp
MFDDIRTSKEKAEKDSEGKTGEGEKDAEVFDEENEEGPRQDCELLKAMAW
REAGMASKKKDTGPSKEHMAQGLALRDSARDGLPGRGATQGFPVVQPAGG
RGKGGSSNSKSRYSAAAAANIRSRGEDCRFRRESETSDGEGPFVGNRTR

mRNA from alignment at Scaffold_347:186814..191254+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2347_4a-0001 ID=EsuBft2347_4a-0001|Name=EsuBft2347_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4441bp|location=Sequence derived from alignment at Scaffold_347:186814..191254+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNCCCCCCTCTCCCCTCGCTATACCATAGAACCTGCCCCTC
GAGACACTCATCAGTAGGTGCAAGCAAATGTTTGACGATATCAGGACGAG
CAAAGAAAAAGCGGAGAAGGACTCCGAGGGGAAGACCGGGGAGGGCGAGA
AGGACGCTGAGGTGTTCGACGAGGAGAACGAGGAGGGTCCGAGGCAAGTT
GATATTGTTCTGTGTTTTAGAGGCCTCACAAACCATGAACTGGAACGGCG
TTGCAATCCGGTGGTTGCCGACATGCAGTTGATCACGTGCCGCCATAAAG
CCTAAACTGACGCAAATTAGCTTTCGAAGACCTGAAGCCAGAGGCCGGTT
GGCCCTAAGGGTTTCTTAGCATCATCGAGTGATCTTCTTCATATTTCGGT
TGTTGCTGTAGTCCTTCTCACGCGGGCCCTTGCGTTCAGAGGACGCGGCA
TAGACGCGGCGTCATCTTCCATAACTATATCTAGACCGTGCACTCAAAAG
AACAACGCGTAGTCTTGCTAAGCTTACTTTGTCGCCAGCGGTACTGACCA
CCCACCCCCCCCACCCACGACGGTTGCTAGGATTAGACTAAAGCGTCGAT
AACTTTGGGAACGCCAAATGATAAACACCCAGTTTTCCCCGTGGAGATAG
TGCAAAGTCCGCCGCCAATCTATCGCAGCGCACAAAATCGTCCTTCCCCT
GGCAACCGCTCAAGCTGGGCGTGGGCGTAGCGCCTACCTTGTCGAACTTG
TTAAGGTGTTAGGGTTAGCCAAACCATAGGTATATTTGGGGGCAGGTAGC
AGTGAAACCGCTGAGAGGTAGTAAGAGCTATGTAGGTCACAGATGAAGGG
GTTACAAAACAACGGTAAAAATGCCCTTGAAACTCAGAGAGGACCAGCAC
GGTTGCCATACCAATGTTGCCTGGCTGGGTTACGGTAGAACGCGTACGGC
GTGTATTATGTGGATCACTGCACTCCCGTGTCCGGCGGGTCCTACGCAGT
CCATCTTGTCTTGTGCTTTTGGTCGAGCAAAGTGGTTAGGAGCTTACTCG
AGCGAAGCGGACGCTTTTTTTTTGCCCTGCGCATTTGTCGTTGGGGCGTC
CATTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCAATGGTTGTAGGTTTCCCGGAGCAGGGTTATAGATTGA
TCTGGGCAGGAGCTTGCATTCACTTTAGAACCGAATGATCATGTGTTGTA
GACGTGCGCTGCCTTCATTAAACAGTTCGATGATCGTCTCACGACATGTA
GCTATTAGTCCAGGGGGGCGACAACAAGCAGCAAGAGTTGGGAGTGCATG
GCCTCTGCCGCCCTGACGTGCCCGCCCCACATGTCCATTCTTCGTCTGAC
ATGTGCTGTGCGTCGTTCAGGATTGCGAATTGCTCAAGGCTATGGCATGG
CGTGAGGCCGGGATGGCGTCGAAGAAGAAGGACACAGGCCCGTCGAAGGA
GCACATGGCGCAGGGACTGGCGTTGCGTGACAGTGCCCGCGACGGTTTGC
CAGGCCGAGGTGCGACACAGGGTTTCCCGGTGGTACAACCGGCAGGTGGC
AGAGGCAAGGGCGGCAGCAGCAACTCCAAGTCCCGTTACTCTGCGGCCGC
TGCGGCGAACATCCGGTCCCGGGGGGAGGACTGTCGGTTCCGACGGGAAT
CAGAGACCTCTGACGGCGAAGGTCCTTTCGTTGGCAACCGCACCCGGTGA
AGACGAGGAGGAAGAGGAGGAGCTATCCGACGAACCAGATGCGTGAGACG
AAGCCCGGAAGGCGACCCTGTTACCAAGCGGCAAGGCTGCGCGGGGGACG
AGGAGCGGGAAGAGTGGGGGAAAGAGGACCCGGTCTGTTCCACCTCTATT
CTCCACGATGAGTGGCTCTGCTGGCCTCCAAAACAGGCTGAGCAGCGTAA
TCGACTTGGTCCGCCAGAAAATGACCGCGCCGGCGGTGCCGACTGTGGGT
GGTGGCGAGCAGGGAGGGGCGAGCAGCAGGACGGAATCGGGTGAGATCAA
AGACCTGCTCAAGAGCAGGTGAACCAGCAGATCTTCAACGCAATGGGGAT
GATGCATGGTGGCGTCCAACCGCACCCACTCGGGATGCAAGCGGGTGCAG
GCGCGCTTCCTCCCTTCGGCGGGTACGCTGGGTTCGGCGGTAGCGCCGCC
TCGGCAGGGCTGGCTCGTTCTGCAGTTGTCGGAGAACCTCCTCCTGCGCA
ACCTTCGCAGGGTGCAACCGCGGCGGGTGCAAGGGCGTTGCCCGTGGTTG
CTGGGGGCGGACGAGCCGCACCTTTTGGTGATGCCTCGTCCGCAGGAGGG
GGGGGGGGCGTCTTCCGAGCTTCGGTGCTTCTTATGGCGGACGAGCGACT
GGTGCAACCTCTGCAGTGGCGGCGGGCGGTGCAGTCCGGGTTAGGGCCCC
GCGGAAGGCTGCGCTTACCACGAGTGGACAGACGCTCTGCGAGTGTGGTC
TTCCGGCATCCCACGGGGAGGTGAAGTCGGTGAGTCTGTTGCACACATAC
TTTGGGACTTGGTCTACATCTGCAGGGAGTAAGGGAGGTGTTGCGGCATT
TCATTGCCGAACTGGTGTCATTCTAATGTTGTAGAAACGTCCGCGAATTA
GTCCCTCATCAGGTGCGGAACCTCCAAAATCCTCCCTCCCCCCCTGCCTC
TGTCCATGCGCCTCGTTTCGGGATTGCACCAGTACGTCCTCGTCGGGTTT
AGGGTGTGTTATTTTTTCCGGCAGGCTTCTTGAACTCTGTTGATGGCGTA
GTTGGCTTATGCTTAGGACGTTGGCCTATTGCCCGTATGCCCCTCTCGCT
CGGCTCTTAGTGCGTTATCCGCAATCCCTGAGCCCCCCCCCCCCGCCCAA
ATGCGCTCCGACACATCGACACCGCCCTCTTTTCTACATGCGTCTGTGTT
TCTGCGTCCTCCACGGCACGAAGAAGGGACGAAAGTACGTAACCTGCCCA
AGTTCGACCGGAATCAGATGTGCAACTTCCACAAGTTCCTCGACCCAGCC
GCGCCTATGCCACAGGTTCAGGCTGAAGGGAAGGCAGCCGAACCGCGTGC
GCGGAAGAAGGCTAGGCCCGGCCACGCGGCCGCGACGATCTCCTCGACGC
AGCTGCAGGCGTAACGCCAAGCCCAAGGCCGAAAGCGTTAGGGTTAGCCT
ACAAGTACTTGTACGCTCAGCCGTCTTGTCTCCATGGAACAGCTTTTCGT
TCTTTTTCTTTTTTGTTTCCTCTCTGTTTTTTTTTTTTTCAACTGCGAGT
CGTATTGTACTCTGCAACCGCAGTACGGTTTATTGCCTCTGTCGAAAGCT
CATCTGACTCTTGTTGCGTTGTCCTCTCTTATTTTTATCCTTTTTCGTTT
TTTTCTTTCTCGAGGAGGTTACACTTTAGGTAGGGTAGCAAGGGATGTGG
GGTAGACTGTAGGTACGGTCGATGTTTTGTCGGTCACTTCTGGTGACATG
TCGTATTGTCCACGTATAAAATTATGAGGGGGGGGGTAGGTATATCCGGG
AGGTCTTTTCGTCTTGACATCGAGATTTCAGGTTTGATTGCAGCTTGTCG
TTATCATTGTCTTCGTTAGCCGTTACAGAGGTTTGTCCTGTCGTTCCCAA
ACCAGTTCCTTTTTGCAAGGTCGACGTCACTGCTCGTTTGTGGTCATGTT
TGGCCTCAAATATTGGCTGGGCGCCCAGTGCCTGGAACTGTGGGTCCTTT
CGATTCGTTTGCGTTGCCCATAGGCAAGTGTTGTTGCCACTAGGGCATGG
GTGCCGTTTACGAAACCCAGTTTGACCTGGTCAGTTCGAGCACGGTACGC
ACGTGGTTGTGGTGGTGTAAGTGGCTCCATGTATCGGGCAACTGCTTTTG
CTGTGACTTGGTACCGCTCTTTCCTGTTTGCAGGAGGGTTCGTTCGTAGA
CCTGTCCTGTCCTGTAGTCATCCTTGTCATAACTTGTTGCCCGCAGGGTG
TTGGTCTGAGTGCAGTTGCACGTCGCTTTGTCGGTGTTTGGTTTTTCGAA
CTCGGACATGTCGATCTGTCTACACTTCGGTTGCCCTGCTTCGTTTGTGT
CGTGCAGCTGCGTGCACCACCGAGAATGTTTTTCGGGCGTGTTGCTCTAT
GGTTTGGTTTGCGTTGCTGTTTTTGATTTTAGTCTTGTTTTTTTCAAGTA
CCTGTGTCCTTTTGGGTTAACAACCCGTTTGTCTTGCTATTCTCGTTCGT
GGAAGGGCACGTATGTAGGTTGTCGGCATTTTGTTTCGTTTGATCGCTTG
TTCTTGTAGCACATGCCGTCGTTCTTCTAGCATATGGGTAACTGTTGCCA
ATTTCCGTTGGAATAAATGGTTCCGATTTCGTCCGAGAGGTGGCATATGG
GGGGGCGATTTGGTGCCTTAGTAAGATTCTTCTCCGTAGGG

Coding sequence (CDS) from alignment at Scaffold_347:186814..191254+

>EsuBft2347_4a-0001 ID=EsuBft2347_4a-0001|Name=EsuBft2347_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=450bp|location=Sequence derived from alignment at Scaffold_347:186814..191254+ (Ectocarpus subulatus male Bft15b)
ATGTTTGACGATATCAGGACGAGCAAAGAAAAAGCGGAGAAGGACTCCGA
GGGGAAGACCGGGGAGGGCGAGAAGGACGCTGAGGTGTTCGACGAGGAGA
ACGAGGAGGGTCCGAGGCAAGATTGCGAATTGCTCAAGGCTATGGCATGG
CGTGAGGCCGGGATGGCGTCGAAGAAGAAGGACACAGGCCCGTCGAAGGA
GCACATGGCGCAGGGACTGGCGTTGCGTGACAGTGCCCGCGACGGTTTGC
CAGGCCGAGGTGCGACACAGGGTTTCCCGGTGGTACAACCGGCAGGTGGC
AGAGGCAAGGGCGGCAGCAGCAACTCCAAGTCCCGTTACTCTGCGGCCGC
TGCGGCGAACATCCGGTCCCGGGGGGAGGACTGTCGGTTCCGACGGGAAT
CAGAGACCTCTGACGGCGAAGGTCCTTTCGTTGGCAACCGCACCCGGTGA