Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G529 |
| ProteomeId | EsuBft2347_3 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR027806 |
| Protein domains | PTHR22930 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 188 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.01e-181 |
| EggNOG OGs | 2AWDH@1|root,2RZYI@2759|Eukaryota |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| Description | DDE superfamily endonuclease |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2347_3a-0001 ID=EsuBft2347_3a-0001|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1889bp|location=Sequence derived from alignment at Scaffold_347:192313..195262- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGAGCGTGTGAGCGCCGTGGTTGTGTTATAGTTGGGCAGCAGCTCGCTG
TAGCAGGGCGCTTACAGTCATGGCGCGACTAGCGCGAGGGAGGCTGGCAG
CCGAGCGGTACGCGGAGAGCATACAAGTCACCACGATCGCAGCTCTGTGT
GCGCTTGTGGGAGGGGAAGACCTATTCATCGTTCTTGGGACGTACAGCTT
ACTGCGCTGGCAGATGTACAAGCAGCTCGTGGCAGCGACAACGATCGAGG
GTATCCGGTTCGACTACTTCGAGAGAATCGGAGGATTCGACTTCAAGGAG
CTGTTGAGGTTCGAGAAACCTCACTTCCTGGACCTGTTGGGCGCACTCCA
GCTACCGAATACGTTCGAAGTGTCGCGTTGGGGATATGGAGTTCAGAGGG
TTCCAGCGAGGCTGGCGTTCGCGGTGACACTGTGGAGGCTGGCGGCACCG
AGGACTTTGATTCGCGACAGGATCTTTTGGGGGATGTCGGAGACGCTCAT
ATGCGAGATCTTCAACCTAACAATCGAGGTAATCTTCGAACGCTGGGGTC
ATCTTGTGAATGACTTGCAAGTAGACGCCATCCTTCCTAGAATCGATTCG
TTCTGCGAGGCCATTGCCGGCCGCGGGTCACCTCTCACTAGGTGCTGGGG
ATTCCTAGATGGAACTATTCGTAAGATTGCTCCTCCTTGGCAAAATCAGA
GGATTTACGATAACGGATGGAAGCGTGTACACTTATTGAAGTATCAGGCG
GTAGATTCCCCGGATGGCATCACCCGTCAACTTTGGGGTCCTGTGCTCGG
TAGGCGCCATGATGTGACGTTGCTGGGGCTAAGTGGGCTGTTGGAGACGC
TGATGCAGTCATTCAATGATGCGGCGGGTGTACCGTACTACATTTACGGC
GACCCAGCATACCAGGTATCCCCATGGCTGATGGCACCATTTAAGGGCTT
GTTGTCTGTTGCCAAGGTGGCATTCATCAGGGCCATGAGTAGAGTCAGGG
TGGCTGTCGAATGGGGCTTCGGCCGGGTCGTGGCGTTGTGGCCTTACGTC
GACTACGTGAAGAAGCGGCAGGTGGCCCTCAGCGCATGCGGTCTTGGAAG
GCAGTACGCGGTGGCTGGTATCCTGACGAATTGCCCCTGCTGTTTCAACC
TAAACTCGACAGCGAAATTATTTGACCTTACCCCCCCTTCCCTCCAAGAA
TACCTTTCGGGAGAGGGGTGACAACGTGTGTCTAATTTGCATGGGACTGA
TGCAGGAAGTAGCTACTGTAGTTGGCACCGCACGTCCCGTACCATCCTGC
AAATGGCCATACTGTATCGACGTCAGGTAGAGGGGTTAACATCAAGCTGC
GTTTCGTTCAGATTATTTGGGTTACCTCACGGCTTCAAAGTGATAACAGC
GGGGGCTAGGGGTTAAGACCTTGGCTGCCTATTGCGCTTGTTTTCACCAA
TTATTGTAGGGGGGTAGAAGTCCCGTTGTACGGTCGAATTCCCCTGATAA
TGCGAACCCCCGTAATGTTGTCTCGGGATTATTTCGTGGTTGTTCCTGTG
GGCCGGAGCGTTGGAGGGGACCTGTATGTCTTCCTGTTTGTTTCCTGGGT
TTTCTCTTCATTTTCTATTTATTTGCCTTCCTCGTTGTTTCTTCCTGTTA
GACCGAGGTCGATTGCCTGTATCCGGGTTAGTTTTTGTTTGGTTGTCCTT
TTTTGTTTGGGCAGAAAACGGATCGTGCCTTGGAGGAATTTTGTTGTGTC
CATTGTGATGTCTTTAGAATTTCAAAAAAAGGTGTACCCCGTTGGGGGGT
AGTTGGCTTGTGGTCACGGGAGGCGTCCGCGTCAGTTGGACCAGTACGAA
CATTAGAAGGCACCGAGTGAGGCCTTTGCGTTTGGTCAT back to topprotein sequence of EsuBft2347_3a-0001 >EsuBft2347_3 ID=EsuBft2347_3|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=383bp
MARLARGRLAAERYAESIQVTTIAALCALVGGEDLFIVLGTYSLLRWQMY
KQLVAATTIEGIRFDYFERIGGFDFKELLRFEKPHFLDLLGALQLPNTFE
VSRWGYGVQRVPARLAFAVTLWRLAAPRTLIRDRIFWGMSETLICEIFNL
TIEVIFERWGHLVNDLQVDAILPRIDSFCEAIAGRGSPLTRCWGFLDGTI
RKIAPPWQNQRIYDNGWKRVHLLKYQAVDSPDGITRQLWGPVLGRRHDVT
LLGLSGLLETLMQSFNDAAGVPYYIYGDPAYQVSPWLMAPFKGLLSVAKV
AFIRAMSRVRVAVEWGFGRVVALWPYVDYVKKRQVALSACGLGRQYAVAG
ILTNCPCCFNLNSTAKLFDLTPPSLQEYLSGEG back to topmRNA from alignment at Scaffold_347:192313..195262- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2347_3a-0001 ID=EsuBft2347_3a-0001|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2950bp|location=Sequence derived from alignment at Scaffold_347:192313..195262- (Ectocarpus subulatus male Bft15b)
GTGAGCGTGTGAGCGCCGTGGTTGTGTTATAGTTGGGCAGCAGCTCGCTG
TAGCAGGGCGCTTACAGTCATGGCGCGACTAGCGCGAGGGAGGCTGGCAG
CCGAGCGGTACGCGGAGAGCATACAAGTCACCACGATCGCAGCTCTGTGT
GCGCTTGTGGGAGGGGAAGACCTATTCATCGTTCTTGGGACGTACAGCTT
ACTGCGCTGGCAGATGTACAAGCAGCTCGTGGCAGCGACAACGATCGAGG
GTATCCGGTTCGACTACTTCGAGAGAATCGGAGGATTCGACTTCAAGGAG
CTGTTGAGGTTCGAGAAACCTCACTTCCTGGACCTGTTGGGCGCACTCCA
GCTACCGAATACGTTCGAAGTGTCGCGGTGAGTACCACGTATCCTCCTTG
GCAGGAGAAGCCCCGAAGCTAACCCCGACATGCCGTGGCGTGTTGCCCTG
CTTACGTGTGGACGACGCAGCGGTACATAGTCCAACTAGGGTTCTTGTTT
GGTATAAAATCAGGTGGAAGTATAGGTATAAATTATCTAGCGCCGCGTCT
AGCGCGGCAATTTCATGAGTTGGGTGCATCCGCCACCACCGCGCCTTGTG
TGCATACACATGACCCTCGCATCGAGGGACAACTTCTTCCAAGCAGAGGG
TCCATACTTCAGCCTAGGTCGTACGCGCTCTTGGGTTGAATTAAATGTGA
CTTATCCACCCTTTCTATCGAGACGAGGTAGGTATGCCCTACAAAGTAAG
ATGTGTAGACGCTCGTACGGTCCCGTCAGACGCCAGACTCGAAGTAAGTC
TCCAAGGAATTTATCTATAGTCTGCTTGATAGAAGTGTTACGAAACCCGC
CGAATCAATCAAAGTTGGTGCTGCTGTACGTACAATTGCAGCATTGTTGT
TGGTGTACTGCTGTAGCACAGTGCTGACCTTCGGTTGGCCATATTGTTTT
CTAACCGCACTGTGCATGGAACCTATCATGGAGGCATGAGCTGGACAACC
TAGCAGAAAACATGTGGCGAGCAATACGCGCTGCACATTGAAAGAGATTC
AAGGCTCAACCGACTACAATCCCACCCATGCAAATGGGATTTGTCGCCGA
TTGGATGACCCCATCCCGTGTCGATCGAGGGCGTTCCGTCGAGGGTGGTT
TTGTCCTATCAGCGATCGGGACGCCGGTGAAAAAACGCCCCAAGACAACA
TTAACTAGGACAAAAACCGCTGTGTTTCGGACGCCGAGATACTCCACAGC
ATCTGTCTGACTCTTATCCGTATGGGCCTTACGCTGATGACGATTACTTC
TACACACTAGGGTCAGCCAGCGGTATATTCCACTATCGTTTGCTCCTAGG
CCTCATGGGTTCGTGTCAAAATCGTCGGTATATAACCCGTAGTGCTACCC
TCGCATTCGACTCTTTTTCTGTACTCCATGCCTTGCAGTTGGGGATATGG
AGTTCAGAGGGTTCCAGCGAGGCTGGCGTTCGCGGTGACACTGTGGAGGC
TGGCGGCACCGAGGACTTTGATTCGCGACAGGATCTTTTGGGGGATGTCG
GAGACGCTCATATGCGAGATCTTCAACCTAACAATCGAGGTAATCTTCGA
ACGCTGGGGTCATCTTGTGAATGACTTGCAAGTAGACGCCATCCTTCCTA
GAATCGATTCGTTCTGCGAGGCCATTGCCGGCCGCGGGTCACCTCTCACT
AGGTGCTGGGGATTCCTAGATGGAACTATTCGTAAGATTGCTCCTCCTTG
GCAAAATCAGAGGATTTACGATAACGGATGGAAGCGTGTACACTTATTGA
AGTATCAGGCGGTAGATTCCCCGGATGGCATCACCCGTCAACTTTGGGGT
CCTGTGCTCGGTAGGCGCCATGATGTGACGTTGCTGGGGCTAAGTGGGCT
GTTGGAGACGCTGATGCAGTCATTCAATGATGCGGCGGGTGTACCGTACT
ACATTTACGGCGACCCAGCATACCAGGTATCCCCATGGCTGATGGCACCA
TTTAAGGGCTTGTTGTCTGTTGCCAAGGTGGCATTCATCAGGGCCATGAG
TAGAGTCAGGGTGGCTGTCGAATGGGGCTTCGGCCGGGTCGTGGCGTTGT
GGCCTTACGTCGACTACGTGAAGAAGCGGCAGGTGGCCCTCAGCGCATGC
GGTCTTGGAAGGCAGTACGCGGTGGCTGGTATCCTGACGAATTGCCCCTG
CTGTTTCAACCTAAACTCGACAGCGAAATTATTTGACCTTACCCCCCCTT
CCCTCCAAGAATACCTTTCGGGAGAGGGGTGACAACGTGTGTCTAATTTG
CATGGGACTGATGCAGGAAGTAGCTACTGTAGTTGGCACCGCACGTCCCG
TACCATCCTGCAAATGGCCATACTGTATCGACGTCAGGTAGAGGGGTTAA
CATCAAGCTGCGTTTCGTTCAGATTATTTGGGTTACCTCACGGCTTCAAA
GTGATAACAGCGGGGGCTAGGGGTTAAGACCTTGGCTGCCTATTGCGCTT
GTTTTCACCAATTATTGTAGGGGGGTAGAAGTCCCGTTGTACGGTCGAAT
TCCCCTGATAATGCGAACCCCCGTAATGTTGTCTCGGGATTATTTCGTGG
TTGTTCCTGTGGGCCGGAGCGTTGGAGGGGACCTGTATGTCTTCCTGTTT
GTTTCCTGGGTTTTCTCTTCATTTTCTATTTATTTGCCTTCCTCGTTGTT
TCTTCCTGTTAGACCGAGGTCGATTGCCTGTATCCGGGTTAGTTTTTGTT
TGGTTGTCCTTTTTTGTTTGGGCAGAAAACGGATCGTGCCTTGGAGGAAT
TTTGTTGTGTCCATTGTGATGTCTTTAGAATTTCAAAAAAAGGTGTACCC
CGTTGGGGGGTAGTTGGCTTGTGGTCACGGGAGGCGTCCGCGTCAGTTGG
ACCAGTACGAACATTAGAAGGCACCGAGTGAGGCCTTTGCGTTTGGTCAT
back to topCoding sequence (CDS) from alignment at Scaffold_347:192313..195262- >EsuBft2347_3a-0001 ID=EsuBft2347_3a-0001|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1152bp|location=Sequence derived from alignment at Scaffold_347:192313..195262- (Ectocarpus subulatus male Bft15b)
ATGGCGCGACTAGCGCGAGGGAGGCTGGCAGCCGAGCGGTACGCGGAGAG
CATACAAGTCACCACGATCGCAGCTCTGTGTGCGCTTGTGGGAGGGGAAG
ACCTATTCATCGTTCTTGGGACGTACAGCTTACTGCGCTGGCAGATGTAC
AAGCAGCTCGTGGCAGCGACAACGATCGAGGGTATCCGGTTCGACTACTT
CGAGAGAATCGGAGGATTCGACTTCAAGGAGCTGTTGAGGTTCGAGAAAC
CTCACTTCCTGGACCTGTTGGGCGCACTCCAGCTACCGAATACGTTCGAA
GTGTCGCGTTGGGGATATGGAGTTCAGAGGGTTCCAGCGAGGCTGGCGTT
CGCGGTGACACTGTGGAGGCTGGCGGCACCGAGGACTTTGATTCGCGACA
GGATCTTTTGGGGGATGTCGGAGACGCTCATATGCGAGATCTTCAACCTA
ACAATCGAGGTAATCTTCGAACGCTGGGGTCATCTTGTGAATGACTTGCA
AGTAGACGCCATCCTTCCTAGAATCGATTCGTTCTGCGAGGCCATTGCCG
GCCGCGGGTCACCTCTCACTAGGTGCTGGGGATTCCTAGATGGAACTATT
CGTAAGATTGCTCCTCCTTGGCAAAATCAGAGGATTTACGATAACGGATG
GAAGCGTGTACACTTATTGAAGTATCAGGCGGTAGATTCCCCGGATGGCA
TCACCCGTCAACTTTGGGGTCCTGTGCTCGGTAGGCGCCATGATGTGACG
TTGCTGGGGCTAAGTGGGCTGTTGGAGACGCTGATGCAGTCATTCAATGA
TGCGGCGGGTGTACCGTACTACATTTACGGCGACCCAGCATACCAGGTAT
CCCCATGGCTGATGGCACCATTTAAGGGCTTGTTGTCTGTTGCCAAGGTG
GCATTCATCAGGGCCATGAGTAGAGTCAGGGTGGCTGTCGAATGGGGCTT
CGGCCGGGTCGTGGCGTTGTGGCCTTACGTCGACTACGTGAAGAAGCGGC
AGGTGGCCCTCAGCGCATGCGGTCTTGGAAGGCAGTACGCGGTGGCTGGT
ATCCTGACGAATTGCCCCTGCTGTTTCAACCTAAACTCGACAGCGAAATT
ATTTGACCTTACCCCCCCTTCCCTCCAAGAATACCTTTCGGGAGAGGGGT
GA back to top
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