EsuBft2347_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2347_3a-0001
Unique Name	EsuBft2347_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:192313..195262 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G529
ProteomeId	EsuBft2347_3
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR027806
Protein domains	PTHR22930
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	188
Hectar predicted targeting category	other localisation
Evalue	1.01e-181
EggNOG OGs	2AWDH@1\|root,2RZYI@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	DDE superfamily endonuclease
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_3a	EsuBft2347_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 192313..195262 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_3a-0001-exon	agat-exon-17728	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 192313..193824 -
EsuBft2347_3a-0001-exon	EsuBft2347_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 194886..195262 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_3a-0001-exon	agat-three_prime_utr-9431	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 192313..192980 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_3a-0001-cds	EsuBft2347_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 192981..193824 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_3a-0001-exon	agat-five_prime_utr-6051	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_347 195194..195262 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2347_3a-0001	EsuBft2347_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 192981..195193 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:192313..195262-
coding sequence from alignment at Scaffold_347:192313..195262-

spliced messenger RNA

>EsuBft2347_3a-0001 ID=EsuBft2347_3a-0001|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1889bp|location=Sequence derived from alignment at Scaffold_347:192313..195262- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGAGCGTGTGAGCGCCGTGGTTGTGTTATAGTTGGGCAGCAGCTCGCTG
TAGCAGGGCGCTTACAGTCATGGCGCGACTAGCGCGAGGGAGGCTGGCAG
CCGAGCGGTACGCGGAGAGCATACAAGTCACCACGATCGCAGCTCTGTGT
GCGCTTGTGGGAGGGGAAGACCTATTCATCGTTCTTGGGACGTACAGCTT
ACTGCGCTGGCAGATGTACAAGCAGCTCGTGGCAGCGACAACGATCGAGG
GTATCCGGTTCGACTACTTCGAGAGAATCGGAGGATTCGACTTCAAGGAG
CTGTTGAGGTTCGAGAAACCTCACTTCCTGGACCTGTTGGGCGCACTCCA
GCTACCGAATACGTTCGAAGTGTCGCGTTGGGGATATGGAGTTCAGAGGG
TTCCAGCGAGGCTGGCGTTCGCGGTGACACTGTGGAGGCTGGCGGCACCG
AGGACTTTGATTCGCGACAGGATCTTTTGGGGGATGTCGGAGACGCTCAT
ATGCGAGATCTTCAACCTAACAATCGAGGTAATCTTCGAACGCTGGGGTC
ATCTTGTGAATGACTTGCAAGTAGACGCCATCCTTCCTAGAATCGATTCG
TTCTGCGAGGCCATTGCCGGCCGCGGGTCACCTCTCACTAGGTGCTGGGG
ATTCCTAGATGGAACTATTCGTAAGATTGCTCCTCCTTGGCAAAATCAGA
GGATTTACGATAACGGATGGAAGCGTGTACACTTATTGAAGTATCAGGCG
GTAGATTCCCCGGATGGCATCACCCGTCAACTTTGGGGTCCTGTGCTCGG
TAGGCGCCATGATGTGACGTTGCTGGGGCTAAGTGGGCTGTTGGAGACGC
TGATGCAGTCATTCAATGATGCGGCGGGTGTACCGTACTACATTTACGGC
GACCCAGCATACCAGGTATCCCCATGGCTGATGGCACCATTTAAGGGCTT
GTTGTCTGTTGCCAAGGTGGCATTCATCAGGGCCATGAGTAGAGTCAGGG
TGGCTGTCGAATGGGGCTTCGGCCGGGTCGTGGCGTTGTGGCCTTACGTC
GACTACGTGAAGAAGCGGCAGGTGGCCCTCAGCGCATGCGGTCTTGGAAG
GCAGTACGCGGTGGCTGGTATCCTGACGAATTGCCCCTGCTGTTTCAACC
TAAACTCGACAGCGAAATTATTTGACCTTACCCCCCCTTCCCTCCAAGAA
TACCTTTCGGGAGAGGGGTGACAACGTGTGTCTAATTTGCATGGGACTGA
TGCAGGAAGTAGCTACTGTAGTTGGCACCGCACGTCCCGTACCATCCTGC
AAATGGCCATACTGTATCGACGTCAGGTAGAGGGGTTAACATCAAGCTGC
GTTTCGTTCAGATTATTTGGGTTACCTCACGGCTTCAAAGTGATAACAGC
GGGGGCTAGGGGTTAAGACCTTGGCTGCCTATTGCGCTTGTTTTCACCAA
TTATTGTAGGGGGGTAGAAGTCCCGTTGTACGGTCGAATTCCCCTGATAA
TGCGAACCCCCGTAATGTTGTCTCGGGATTATTTCGTGGTTGTTCCTGTG
GGCCGGAGCGTTGGAGGGGACCTGTATGTCTTCCTGTTTGTTTCCTGGGT
TTTCTCTTCATTTTCTATTTATTTGCCTTCCTCGTTGTTTCTTCCTGTTA
GACCGAGGTCGATTGCCTGTATCCGGGTTAGTTTTTGTTTGGTTGTCCTT
TTTTGTTTGGGCAGAAAACGGATCGTGCCTTGGAGGAATTTTGTTGTGTC
CATTGTGATGTCTTTAGAATTTCAAAAAAAGGTGTACCCCGTTGGGGGGT
AGTTGGCTTGTGGTCACGGGAGGCGTCCGCGTCAGTTGGACCAGTACGAA
CATTAGAAGGCACCGAGTGAGGCCTTTGCGTTTGGTCAT

protein sequence of EsuBft2347_3a-0001

>EsuBft2347_3 ID=EsuBft2347_3|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=383bp
MARLARGRLAAERYAESIQVTTIAALCALVGGEDLFIVLGTYSLLRWQMY
KQLVAATTIEGIRFDYFERIGGFDFKELLRFEKPHFLDLLGALQLPNTFE
VSRWGYGVQRVPARLAFAVTLWRLAAPRTLIRDRIFWGMSETLICEIFNL
TIEVIFERWGHLVNDLQVDAILPRIDSFCEAIAGRGSPLTRCWGFLDGTI
RKIAPPWQNQRIYDNGWKRVHLLKYQAVDSPDGITRQLWGPVLGRRHDVT
LLGLSGLLETLMQSFNDAAGVPYYIYGDPAYQVSPWLMAPFKGLLSVAKV
AFIRAMSRVRVAVEWGFGRVVALWPYVDYVKKRQVALSACGLGRQYAVAG
ILTNCPCCFNLNSTAKLFDLTPPSLQEYLSGEG

mRNA from alignment at Scaffold_347:192313..195262-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2347_3a-0001 ID=EsuBft2347_3a-0001|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2950bp|location=Sequence derived from alignment at Scaffold_347:192313..195262- (Ectocarpus subulatus male Bft15b)
GTGAGCGTGTGAGCGCCGTGGTTGTGTTATAGTTGGGCAGCAGCTCGCTG
TAGCAGGGCGCTTACAGTCATGGCGCGACTAGCGCGAGGGAGGCTGGCAG
CCGAGCGGTACGCGGAGAGCATACAAGTCACCACGATCGCAGCTCTGTGT
GCGCTTGTGGGAGGGGAAGACCTATTCATCGTTCTTGGGACGTACAGCTT
ACTGCGCTGGCAGATGTACAAGCAGCTCGTGGCAGCGACAACGATCGAGG
GTATCCGGTTCGACTACTTCGAGAGAATCGGAGGATTCGACTTCAAGGAG
CTGTTGAGGTTCGAGAAACCTCACTTCCTGGACCTGTTGGGCGCACTCCA
GCTACCGAATACGTTCGAAGTGTCGCGGTGAGTACCACGTATCCTCCTTG
GCAGGAGAAGCCCCGAAGCTAACCCCGACATGCCGTGGCGTGTTGCCCTG
CTTACGTGTGGACGACGCAGCGGTACATAGTCCAACTAGGGTTCTTGTTT
GGTATAAAATCAGGTGGAAGTATAGGTATAAATTATCTAGCGCCGCGTCT
AGCGCGGCAATTTCATGAGTTGGGTGCATCCGCCACCACCGCGCCTTGTG
TGCATACACATGACCCTCGCATCGAGGGACAACTTCTTCCAAGCAGAGGG
TCCATACTTCAGCCTAGGTCGTACGCGCTCTTGGGTTGAATTAAATGTGA
CTTATCCACCCTTTCTATCGAGACGAGGTAGGTATGCCCTACAAAGTAAG
ATGTGTAGACGCTCGTACGGTCCCGTCAGACGCCAGACTCGAAGTAAGTC
TCCAAGGAATTTATCTATAGTCTGCTTGATAGAAGTGTTACGAAACCCGC
CGAATCAATCAAAGTTGGTGCTGCTGTACGTACAATTGCAGCATTGTTGT
TGGTGTACTGCTGTAGCACAGTGCTGACCTTCGGTTGGCCATATTGTTTT
CTAACCGCACTGTGCATGGAACCTATCATGGAGGCATGAGCTGGACAACC
TAGCAGAAAACATGTGGCGAGCAATACGCGCTGCACATTGAAAGAGATTC
AAGGCTCAACCGACTACAATCCCACCCATGCAAATGGGATTTGTCGCCGA
TTGGATGACCCCATCCCGTGTCGATCGAGGGCGTTCCGTCGAGGGTGGTT
TTGTCCTATCAGCGATCGGGACGCCGGTGAAAAAACGCCCCAAGACAACA
TTAACTAGGACAAAAACCGCTGTGTTTCGGACGCCGAGATACTCCACAGC
ATCTGTCTGACTCTTATCCGTATGGGCCTTACGCTGATGACGATTACTTC
TACACACTAGGGTCAGCCAGCGGTATATTCCACTATCGTTTGCTCCTAGG
CCTCATGGGTTCGTGTCAAAATCGTCGGTATATAACCCGTAGTGCTACCC
TCGCATTCGACTCTTTTTCTGTACTCCATGCCTTGCAGTTGGGGATATGG
AGTTCAGAGGGTTCCAGCGAGGCTGGCGTTCGCGGTGACACTGTGGAGGC
TGGCGGCACCGAGGACTTTGATTCGCGACAGGATCTTTTGGGGGATGTCG
GAGACGCTCATATGCGAGATCTTCAACCTAACAATCGAGGTAATCTTCGA
ACGCTGGGGTCATCTTGTGAATGACTTGCAAGTAGACGCCATCCTTCCTA
GAATCGATTCGTTCTGCGAGGCCATTGCCGGCCGCGGGTCACCTCTCACT
AGGTGCTGGGGATTCCTAGATGGAACTATTCGTAAGATTGCTCCTCCTTG
GCAAAATCAGAGGATTTACGATAACGGATGGAAGCGTGTACACTTATTGA
AGTATCAGGCGGTAGATTCCCCGGATGGCATCACCCGTCAACTTTGGGGT
CCTGTGCTCGGTAGGCGCCATGATGTGACGTTGCTGGGGCTAAGTGGGCT
GTTGGAGACGCTGATGCAGTCATTCAATGATGCGGCGGGTGTACCGTACT
ACATTTACGGCGACCCAGCATACCAGGTATCCCCATGGCTGATGGCACCA
TTTAAGGGCTTGTTGTCTGTTGCCAAGGTGGCATTCATCAGGGCCATGAG
TAGAGTCAGGGTGGCTGTCGAATGGGGCTTCGGCCGGGTCGTGGCGTTGT
GGCCTTACGTCGACTACGTGAAGAAGCGGCAGGTGGCCCTCAGCGCATGC
GGTCTTGGAAGGCAGTACGCGGTGGCTGGTATCCTGACGAATTGCCCCTG
CTGTTTCAACCTAAACTCGACAGCGAAATTATTTGACCTTACCCCCCCTT
CCCTCCAAGAATACCTTTCGGGAGAGGGGTGACAACGTGTGTCTAATTTG
CATGGGACTGATGCAGGAAGTAGCTACTGTAGTTGGCACCGCACGTCCCG
TACCATCCTGCAAATGGCCATACTGTATCGACGTCAGGTAGAGGGGTTAA
CATCAAGCTGCGTTTCGTTCAGATTATTTGGGTTACCTCACGGCTTCAAA
GTGATAACAGCGGGGGCTAGGGGTTAAGACCTTGGCTGCCTATTGCGCTT
GTTTTCACCAATTATTGTAGGGGGGTAGAAGTCCCGTTGTACGGTCGAAT
TCCCCTGATAATGCGAACCCCCGTAATGTTGTCTCGGGATTATTTCGTGG
TTGTTCCTGTGGGCCGGAGCGTTGGAGGGGACCTGTATGTCTTCCTGTTT
GTTTCCTGGGTTTTCTCTTCATTTTCTATTTATTTGCCTTCCTCGTTGTT
TCTTCCTGTTAGACCGAGGTCGATTGCCTGTATCCGGGTTAGTTTTTGTT
TGGTTGTCCTTTTTTGTTTGGGCAGAAAACGGATCGTGCCTTGGAGGAAT
TTTGTTGTGTCCATTGTGATGTCTTTAGAATTTCAAAAAAAGGTGTACCC
CGTTGGGGGGTAGTTGGCTTGTGGTCACGGGAGGCGTCCGCGTCAGTTGG
ACCAGTACGAACATTAGAAGGCACCGAGTGAGGCCTTTGCGTTTGGTCAT

Coding sequence (CDS) from alignment at Scaffold_347:192313..195262-

>EsuBft2347_3a-0001 ID=EsuBft2347_3a-0001|Name=EsuBft2347_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1152bp|location=Sequence derived from alignment at Scaffold_347:192313..195262- (Ectocarpus subulatus male Bft15b)
ATGGCGCGACTAGCGCGAGGGAGGCTGGCAGCCGAGCGGTACGCGGAGAG
CATACAAGTCACCACGATCGCAGCTCTGTGTGCGCTTGTGGGAGGGGAAG
ACCTATTCATCGTTCTTGGGACGTACAGCTTACTGCGCTGGCAGATGTAC
AAGCAGCTCGTGGCAGCGACAACGATCGAGGGTATCCGGTTCGACTACTT
CGAGAGAATCGGAGGATTCGACTTCAAGGAGCTGTTGAGGTTCGAGAAAC
CTCACTTCCTGGACCTGTTGGGCGCACTCCAGCTACCGAATACGTTCGAA
GTGTCGCGTTGGGGATATGGAGTTCAGAGGGTTCCAGCGAGGCTGGCGTT
CGCGGTGACACTGTGGAGGCTGGCGGCACCGAGGACTTTGATTCGCGACA
GGATCTTTTGGGGGATGTCGGAGACGCTCATATGCGAGATCTTCAACCTA
ACAATCGAGGTAATCTTCGAACGCTGGGGTCATCTTGTGAATGACTTGCA
AGTAGACGCCATCCTTCCTAGAATCGATTCGTTCTGCGAGGCCATTGCCG
GCCGCGGGTCACCTCTCACTAGGTGCTGGGGATTCCTAGATGGAACTATT
CGTAAGATTGCTCCTCCTTGGCAAAATCAGAGGATTTACGATAACGGATG
GAAGCGTGTACACTTATTGAAGTATCAGGCGGTAGATTCCCCGGATGGCA
TCACCCGTCAACTTTGGGGTCCTGTGCTCGGTAGGCGCCATGATGTGACG
TTGCTGGGGCTAAGTGGGCTGTTGGAGACGCTGATGCAGTCATTCAATGA
TGCGGCGGGTGTACCGTACTACATTTACGGCGACCCAGCATACCAGGTAT
CCCCATGGCTGATGGCACCATTTAAGGGCTTGTTGTCTGTTGCCAAGGTG
GCATTCATCAGGGCCATGAGTAGAGTCAGGGTGGCTGTCGAATGGGGCTT
CGGCCGGGTCGTGGCGTTGTGGCCTTACGTCGACTACGTGAAGAAGCGGC
AGGTGGCCCTCAGCGCATGCGGTCTTGGAAGGCAGTACGCGGTGGCTGGT
ATCCTGACGAATTGCCCCTGCTGTTTCAACCTAAACTCGACAGCGAAATT
ATTTGACCTTACCCCCCCTTCCCTCCAAGAATACCTTTCGGGAGAGGGGT
GA