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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FWI7 |
| ProteomeId | EsuBft2347_2 |
| Protein domains | IPR000164 |
| Protein domains | IPR007125 |
| Protein domains | IPR009072 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | histone h3 os:urechis caupo pe:1 sv:2 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2042 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.64e-84 |
| EggNOG OGs | COG2036@1|root,KOG1745@2759|Eukaryota |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| KEGG ko | ko:K11253 |
| KEGG Pathway | ko05034,ko05202,ko05322,map05034,map05202,map05322 |
| GOs | GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363 |
| Description | protein heterodimerization activity |
| COG category | B |
| BRITE | ko00000,ko00001,ko03036,ko04147 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003677 |
| GO | 0000786 |
| GO | 0006334 |
| GO | 0046982 |
| GO | 0005654 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2347_2a-0001 ID=EsuBft2347_2a-0001|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2042bp|location=Sequence derived from alignment at Scaffold_347:196537..200165- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCTACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCTTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
TTTCCAGCGCCTTGTCCGTGAGATCGCCCAGGACTTCAAGAGTGACCTCC
GCTTCCAGGGATCGGCCGTGCTCGCTCTGCAGGAGGCTGCCGAGGCCTAC
CTTGTGGGCCTCTTCGAAGACACCAACTTGTGCGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAGGTCATCACAGCCTACAGGCTGCACCGCTGGAGGTCACTC
TCTCTCTACCGAAGTGAGTCTTCCCCCAACAACCAACCTGGTGTTTATTT
AACACCACCCTTTCAATCGAAGAAAAATATTACAGCTGCAGTGTTGGTCA
GATTGTTGTTTGTTGTTGTTGACTTCACATTAAACCGTATGCCAGTTGCT
AAATGCCAAAATCTAGCAAAGACTCTCGGCCCGTGGTCACGAAAGTGCTG
GAGCCATCTGAGGATCTAAAGAACACGCACACGTAGCAAGAAAAAGGTGT
ACAAGAGCCCGAAGAGGTGTGTCCGACGACCGACCTGTCCAGAGCTTCAA
CCGGTCCAACCTTGTGTACTTGATGGCGCGGCCGTATTGGGGAGGTCGGT
TTGGACTGAGAACTGTTGGTGATACAAGAAGCTAAGGTTGTGGGCTTTCT
GTAGCGCCCGCCATCACTCCCGTGGGAGGTCTGCGGATGTAGCACTAAGA
GAATTGCCTGTCGCGGGTTTCACCTGACACAAAAGAGTGTCGGCCTGTTG
CGGCGTCGCGTGGCGGCGGGATATTTGAACTTCTGCGTTCTAAGTAGAAT
CTCACGTGCTTCATTTTCCAAACATCATAGTTGGTGACACCAATCTTTAT
TGGGGAAGGTCGGATCGCGATCCCCCAAGTGGGTGACATGCTTTGGTATC
ACCGATAGGTACCAGCTGTCAAGCCTCTCCCGTTGGTTTTGCTCTGTGGC
GAGGTGCCCGGTCTCTTTCGGCGCGCGGGTGTCCTCAGGTGTAAACTCCA
GTCATTTTATGGAAAACTGTCCGGCGTTCCTAAATTTGGGTTTCGTGTAC
CTGGCCACAAATAAGTGCGGCGCAATCTAAACTCCTAACGATGGCTGAGG
GCGGTCCTTGTCAGACAGGTTTTCCGTCGAAAATCGGAAATCGAAAATGT
CACTAATTGGACAAAGCTCCAGTATTCGGCCGCCGGATTTTCGATCTGGG
GGTAACCTGCATTCTACAATACCTCTGTAGTTCTCTACTGGGTCGGATAT
TCTCCGATATGGAAAACCCAAAAGCGGGCACGAACAGACTCGAAATCGAA
AATCGAAAATACCAACCGGACAATCAAGCTGGCTGCCACACCCGCGCAGA
ATCGTACGTGCGTCTATTTCGATACTCGTCTAGCCACCTGCAGACTGCTT
GGTGATGCAAGCAAGAGCTTGTCAGAAAGCTGGCATCCAGCAGAGCACGG
TATACTTTCTTTGAGCGAGATCTGCGCTAAGTTGAGAGAGTCATCGCCGT
GAAATTCTTTCTTTGTAAACCCAGTTCAACGACAACTATTTTTGGCTTTC
TTGTATCAGCAAGCAGCATGCAGTCACATATTGCTCGCTGAGTTCGCAGC
GTATCGATGCAAGACAAAGACCCCCCAACCCGCTTGATCATGCCCCTTGT
TCGCAGCTATCGCTCGCTGTCTTGGATGCCATGTGACTCTCATGGTCATG
GTTTGAATCATCGCAACTGCCATGTATGGGCCTTGTTCGCCTCTTCCAGC
TTGATTTTCGATTGCGATTTCCCGCCTGCGCTGTGTAGAGCCAACCCGAA
ATCAAAAATCAAAATCCAATTTCGATTTCGAGTTTCGATGCA back to topprotein sequence of EsuBft2347_2a-0001 >EsuBft2347_2 ID=EsuBft2347_2|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS back to topmRNA from alignment at Scaffold_347:196537..200165- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2347_2a-0001 ID=EsuBft2347_2a-0001|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3629bp|location=Sequence derived from alignment at Scaffold_347:196537..200165- (Ectocarpus subulatus male Bft15b)
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCTACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCTTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
TTTCCAGCGCCTTGTCCGTGAGATCGCCCAGGACTTCAAGAGTGACCTCC
GCTTCCAGGGATCGGCCGTGCTCGCTCTGCAGGAGGCTGCCGAGGCCTAC
CTTGTGGGCCTCTTCGAAGACACCAACTTGTGCGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAGGTCATCACAGCCTACAGGCTGCACCGCTGGAGGTCACTC
TCTCTCTACCGAAGTGAGTCTTCCCCCAACAACCAACCTGGTGTTTATTT
AACACCACCCTTTCAATCGAAGAAAAATATTACAGCTGCAGTGTTGGTCA
GATTGTTGTTTGTTGTTGTTGACTTCACATTAAACCGTATGCCAGTTGCT
AAATGCCAAAATCTAGCAAAGACTCTCGGCCCGTGGTCACGAAAGTGCTG
GAGCCATCTGAGGATCTAAAGAACACGCACACGTAGCAAGAAAAAGGTGT
ACAAGAGCCCGAAGAGGTACTACTACACCTATATATAATCCCTGCAGCAC
CGTACGCGTGCCCAAAACTGAACTACACGTCCGTCTCACCGTTCGACTAC
AGCAACATCACCCCCTACTTGTCCCACTCTGTACCAAAACGAATGATTGC
CGACTACAGCATACTTGCTGTCTGAAGTGCTGTCTGTACAAAAACACCAT
GGTAGGCATGGAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCATGCCTC
GCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAGGGTG
AGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCCTTCACTACAACCCATGT
CTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAAATTTGAGC
CGCCTTTTTTCTGTGCACCGGGTATCGATCTCGCAAACGCTGTATGCCAC
CTTTTGGAATAGTGAAAGCAGGGACGAGTAGCTGTGCTCAGCTATCGTTT
GGGGTGAAGACGTTTGAATGCTGGCTGCGTGCGACTTCTTTGGTCCAAAA
GGGAGTGGTTTATTTTCAGATGAAAGCATGATGCGAAAAGAGAGAATCAG
GCGTACCTCAAGCCGGTATACATCCTCATACAGCCCCTCCCCCCAACCAC
CGGTCAGAGCAGACCTTCCACAACGCGTCTCTGCAGCCCACAAAGTCCAA
CATCGCCATCGAAAAAGCACTACGCGTGCTTGTACGTACACCGCGGTGGT
ATTCGAGGTGGTTTCCTGCCACCGTTAGTCGGTGCAGGTGTGTCCGACGA
CCGACCTGTCCAGAGCTTCAACCGGTCCAACCTTGTGTACTTGATGGCGC
GGCCGTATTGGGGAGGTCGGTTTGGACTGAGAACTGTTGGTGATACAAGA
AGCTAAGGTTGTGGGCTTTCTGTAGCGCCCGCCATCACTCCCGTGGGAGG
TCTGCGGATGTAGCACTAAGAGAATTGCCTGTCGCGGGTTTCACCTGACA
CAAAAGAGTGTCGGCCTGTTGCGGCGTCGCGTGGCGGCGGGATATTTGAA
CTTCTGCGTTCTAAGTAGAATCTCACGTGCTTCATTTTCCAAACATCATA
GTTGGTGACACCAATCTTTATTGGGGAAGGTCGGATCGCGATCCCCCAAG
TGGGTGACATGCTTTGGTATCACCGATAGGTACCAGCTGTCAAGCCTCTC
CCGTTGGTTTTGCTCTGTGGCGAGGTGCCCGGTCTCTTTCGGCGCGCGGG
TGTCCTCAGGTGTAAACTCCAGTCATTTTATGGAAAACTGTCCGGCGTTC
CTAAATTTGGGTTTCGTGTACCTGGCCACAAATAAGTGCGGCGCAATCTA
AACTCCTAACGATGGCTGAGGGCGGTCCTTGTCAGACAGGTTTTCCGTCG
AAAATCGGAAATCGAAAATGTCACTAATTGGACAAAGCTCCAGTATTCGG
CCGCCGGATTTTCGATCTGGGGGTAAGTGTTCCGAATATATAAGGAGAAT
AAATATTCGCACAGAACGACTACCCATTCGAGATATACCCACAGTCGAAC
GGGATGTGGTGGAGTCTTTTCAGTGAGTGGAGGAAACCCGGCTGGGTACT
GGACTTAGTTCGAGTCTTTTAGAATCTAAACACTGATGATTTATATCAGT
GATGTCAGCTGGTGCTAAATACAAGAACATATGTATAGGTAACCTGCATT
CTACAATACCTCTGTAGTTCTCTACTGGGTCGGATATTCTCCGATATGGA
AAACCCAAAAGCGGGCACGAACAGACTCGAAATCGAAAATCGAAAATACC
AACCGGACAATCAAGCTGGCTGCCACACCCGCGCAGAATCGTACGTGCGT
CTATTTCGATACTCGTCTAGCCACCTGCAGACTGCTTGGTGATGCAAGCA
AGAGCTTGTCAGAAAGCTGGCATCCAGCAGAGCACGGTATACTTTCTTTG
AGCGAGATCTGCGCTAAGTTGAGAGAGTCATCGCCGTGAAATTCTTTCTT
TGTAAACCCAGTTCAACGACAACTATTTTTGGCTTTCTTGTATCAGCAAG
CAGCATGCAGTCACATATTGCTCGCTGAGTTCGCAGCGTATCGATGCAAG
ACAAAGACCCCCCAACCCGCTTGATCATGCCCCTTGTTCGCAGCTATCGC
TCGCTGTCTTGGATGCCATGTGACTCTCATGGTCATGGTTTGAATCATCG
CAACTGCCATGTATGGGCCTTGTTCGCCTCTTCCAGCTTGATTTTCGATT
GCGATTTCCCGCCTGCGCTGTGTAGAGCCAACCCGAAATCAAAAATCAAA
ATCCAATTTCGATTTCGAGTTTCGATGCA back to topCoding sequence (CDS) from alignment at Scaffold_347:196537..200165- >EsuBft2347_2a-0001 ID=EsuBft2347_2a-0001|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_347:196537..200165- (Ectocarpus subulatus male Bft15b)
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCTACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCTTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
TTTCCAGCGCCTTGTCCGTGAGATCGCCCAGGACTTCAAGAGTGACCTCC
GCTTCCAGGGATCGGCCGTGCTCGCTCTGCAGGAGGCTGCCGAGGCCTAC
CTTGTGGGCCTCTTCGAAGACACCAACTTGTGCGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAG back to top
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