EsuBft2347_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2347_2a-0001
Unique NameEsuBft2347_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:196537..200165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FWI7
ProteomeIdEsuBft2347_2
Protein domainsIPR000164
Protein domainsIPR007125
Protein domainsIPR009072
Ownerapollo_admin@sb-roscoff.fr
Notehistone h3 os:urechis caupo pe:1 sv:2 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length2042
Hectar predicted targeting categoryother localisation
Evalue1.64e-84
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
GO0000786
GO0006334
GO0046982
GO0005654
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_2aEsuBft2347_2aEctocarpus subulatus male Bft15bgeneScaffold_347 196537..200165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_2a-0001EsuBft2347_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 199755..200165 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_2a-0001-exonagat-exon-17727Ectocarpus subulatus male Bft15bexonScaffold_347 196537..197177 -
EsuBft2347_2a-0001-exonEsuBft2347_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 197394..198078 -
EsuBft2347_2a-0001-exonagat-exon-17726Ectocarpus subulatus male Bft15bexonScaffold_347 199450..200165 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_2a-0001-exonagat-three_prime_utr-9428Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 196537..197177 -
EsuBft2347_2a-0001-exonagat-three_prime_utr-9429Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 197394..198078 -
EsuBft2347_2a-0001-exonagat-three_prime_utr-9430Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 199450..199754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_2a-0001-cdsEsuBft2347_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 199755..200165 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2347_2a-0001 ID=EsuBft2347_2a-0001|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2042bp|location=Sequence derived from alignment at Scaffold_347:196537..200165- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCTACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCTTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
TTTCCAGCGCCTTGTCCGTGAGATCGCCCAGGACTTCAAGAGTGACCTCC
GCTTCCAGGGATCGGCCGTGCTCGCTCTGCAGGAGGCTGCCGAGGCCTAC
CTTGTGGGCCTCTTCGAAGACACCAACTTGTGCGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAGGTCATCACAGCCTACAGGCTGCACCGCTGGAGGTCACTC
TCTCTCTACCGAAGTGAGTCTTCCCCCAACAACCAACCTGGTGTTTATTT
AACACCACCCTTTCAATCGAAGAAAAATATTACAGCTGCAGTGTTGGTCA
GATTGTTGTTTGTTGTTGTTGACTTCACATTAAACCGTATGCCAGTTGCT
AAATGCCAAAATCTAGCAAAGACTCTCGGCCCGTGGTCACGAAAGTGCTG
GAGCCATCTGAGGATCTAAAGAACACGCACACGTAGCAAGAAAAAGGTGT
ACAAGAGCCCGAAGAGGTGTGTCCGACGACCGACCTGTCCAGAGCTTCAA
CCGGTCCAACCTTGTGTACTTGATGGCGCGGCCGTATTGGGGAGGTCGGT
TTGGACTGAGAACTGTTGGTGATACAAGAAGCTAAGGTTGTGGGCTTTCT
GTAGCGCCCGCCATCACTCCCGTGGGAGGTCTGCGGATGTAGCACTAAGA
GAATTGCCTGTCGCGGGTTTCACCTGACACAAAAGAGTGTCGGCCTGTTG
CGGCGTCGCGTGGCGGCGGGATATTTGAACTTCTGCGTTCTAAGTAGAAT
CTCACGTGCTTCATTTTCCAAACATCATAGTTGGTGACACCAATCTTTAT
TGGGGAAGGTCGGATCGCGATCCCCCAAGTGGGTGACATGCTTTGGTATC
ACCGATAGGTACCAGCTGTCAAGCCTCTCCCGTTGGTTTTGCTCTGTGGC
GAGGTGCCCGGTCTCTTTCGGCGCGCGGGTGTCCTCAGGTGTAAACTCCA
GTCATTTTATGGAAAACTGTCCGGCGTTCCTAAATTTGGGTTTCGTGTAC
CTGGCCACAAATAAGTGCGGCGCAATCTAAACTCCTAACGATGGCTGAGG
GCGGTCCTTGTCAGACAGGTTTTCCGTCGAAAATCGGAAATCGAAAATGT
CACTAATTGGACAAAGCTCCAGTATTCGGCCGCCGGATTTTCGATCTGGG
GGTAACCTGCATTCTACAATACCTCTGTAGTTCTCTACTGGGTCGGATAT
TCTCCGATATGGAAAACCCAAAAGCGGGCACGAACAGACTCGAAATCGAA
AATCGAAAATACCAACCGGACAATCAAGCTGGCTGCCACACCCGCGCAGA
ATCGTACGTGCGTCTATTTCGATACTCGTCTAGCCACCTGCAGACTGCTT
GGTGATGCAAGCAAGAGCTTGTCAGAAAGCTGGCATCCAGCAGAGCACGG
TATACTTTCTTTGAGCGAGATCTGCGCTAAGTTGAGAGAGTCATCGCCGT
GAAATTCTTTCTTTGTAAACCCAGTTCAACGACAACTATTTTTGGCTTTC
TTGTATCAGCAAGCAGCATGCAGTCACATATTGCTCGCTGAGTTCGCAGC
GTATCGATGCAAGACAAAGACCCCCCAACCCGCTTGATCATGCCCCTTGT
TCGCAGCTATCGCTCGCTGTCTTGGATGCCATGTGACTCTCATGGTCATG
GTTTGAATCATCGCAACTGCCATGTATGGGCCTTGTTCGCCTCTTCCAGC
TTGATTTTCGATTGCGATTTCCCGCCTGCGCTGTGTAGAGCCAACCCGAA
ATCAAAAATCAAAATCCAATTTCGATTTCGAGTTTCGATGCA
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protein sequence of EsuBft2347_2a-0001

>EsuBft2347_2 ID=EsuBft2347_2|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
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mRNA from alignment at Scaffold_347:196537..200165-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2347_2a-0001 ID=EsuBft2347_2a-0001|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3629bp|location=Sequence derived from alignment at Scaffold_347:196537..200165- (Ectocarpus subulatus male Bft15b)
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCTACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCTTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
TTTCCAGCGCCTTGTCCGTGAGATCGCCCAGGACTTCAAGAGTGACCTCC
GCTTCCAGGGATCGGCCGTGCTCGCTCTGCAGGAGGCTGCCGAGGCCTAC
CTTGTGGGCCTCTTCGAAGACACCAACTTGTGCGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAGGTCATCACAGCCTACAGGCTGCACCGCTGGAGGTCACTC
TCTCTCTACCGAAGTGAGTCTTCCCCCAACAACCAACCTGGTGTTTATTT
AACACCACCCTTTCAATCGAAGAAAAATATTACAGCTGCAGTGTTGGTCA
GATTGTTGTTTGTTGTTGTTGACTTCACATTAAACCGTATGCCAGTTGCT
AAATGCCAAAATCTAGCAAAGACTCTCGGCCCGTGGTCACGAAAGTGCTG
GAGCCATCTGAGGATCTAAAGAACACGCACACGTAGCAAGAAAAAGGTGT
ACAAGAGCCCGAAGAGGTACTACTACACCTATATATAATCCCTGCAGCAC
CGTACGCGTGCCCAAAACTGAACTACACGTCCGTCTCACCGTTCGACTAC
AGCAACATCACCCCCTACTTGTCCCACTCTGTACCAAAACGAATGATTGC
CGACTACAGCATACTTGCTGTCTGAAGTGCTGTCTGTACAAAAACACCAT
GGTAGGCATGGAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCATGCCTC
GCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAGGGTG
AGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCCTTCACTACAACCCATGT
CTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAAATTTGAGC
CGCCTTTTTTCTGTGCACCGGGTATCGATCTCGCAAACGCTGTATGCCAC
CTTTTGGAATAGTGAAAGCAGGGACGAGTAGCTGTGCTCAGCTATCGTTT
GGGGTGAAGACGTTTGAATGCTGGCTGCGTGCGACTTCTTTGGTCCAAAA
GGGAGTGGTTTATTTTCAGATGAAAGCATGATGCGAAAAGAGAGAATCAG
GCGTACCTCAAGCCGGTATACATCCTCATACAGCCCCTCCCCCCAACCAC
CGGTCAGAGCAGACCTTCCACAACGCGTCTCTGCAGCCCACAAAGTCCAA
CATCGCCATCGAAAAAGCACTACGCGTGCTTGTACGTACACCGCGGTGGT
ATTCGAGGTGGTTTCCTGCCACCGTTAGTCGGTGCAGGTGTGTCCGACGA
CCGACCTGTCCAGAGCTTCAACCGGTCCAACCTTGTGTACTTGATGGCGC
GGCCGTATTGGGGAGGTCGGTTTGGACTGAGAACTGTTGGTGATACAAGA
AGCTAAGGTTGTGGGCTTTCTGTAGCGCCCGCCATCACTCCCGTGGGAGG
TCTGCGGATGTAGCACTAAGAGAATTGCCTGTCGCGGGTTTCACCTGACA
CAAAAGAGTGTCGGCCTGTTGCGGCGTCGCGTGGCGGCGGGATATTTGAA
CTTCTGCGTTCTAAGTAGAATCTCACGTGCTTCATTTTCCAAACATCATA
GTTGGTGACACCAATCTTTATTGGGGAAGGTCGGATCGCGATCCCCCAAG
TGGGTGACATGCTTTGGTATCACCGATAGGTACCAGCTGTCAAGCCTCTC
CCGTTGGTTTTGCTCTGTGGCGAGGTGCCCGGTCTCTTTCGGCGCGCGGG
TGTCCTCAGGTGTAAACTCCAGTCATTTTATGGAAAACTGTCCGGCGTTC
CTAAATTTGGGTTTCGTGTACCTGGCCACAAATAAGTGCGGCGCAATCTA
AACTCCTAACGATGGCTGAGGGCGGTCCTTGTCAGACAGGTTTTCCGTCG
AAAATCGGAAATCGAAAATGTCACTAATTGGACAAAGCTCCAGTATTCGG
CCGCCGGATTTTCGATCTGGGGGTAAGTGTTCCGAATATATAAGGAGAAT
AAATATTCGCACAGAACGACTACCCATTCGAGATATACCCACAGTCGAAC
GGGATGTGGTGGAGTCTTTTCAGTGAGTGGAGGAAACCCGGCTGGGTACT
GGACTTAGTTCGAGTCTTTTAGAATCTAAACACTGATGATTTATATCAGT
GATGTCAGCTGGTGCTAAATACAAGAACATATGTATAGGTAACCTGCATT
CTACAATACCTCTGTAGTTCTCTACTGGGTCGGATATTCTCCGATATGGA
AAACCCAAAAGCGGGCACGAACAGACTCGAAATCGAAAATCGAAAATACC
AACCGGACAATCAAGCTGGCTGCCACACCCGCGCAGAATCGTACGTGCGT
CTATTTCGATACTCGTCTAGCCACCTGCAGACTGCTTGGTGATGCAAGCA
AGAGCTTGTCAGAAAGCTGGCATCCAGCAGAGCACGGTATACTTTCTTTG
AGCGAGATCTGCGCTAAGTTGAGAGAGTCATCGCCGTGAAATTCTTTCTT
TGTAAACCCAGTTCAACGACAACTATTTTTGGCTTTCTTGTATCAGCAAG
CAGCATGCAGTCACATATTGCTCGCTGAGTTCGCAGCGTATCGATGCAAG
ACAAAGACCCCCCAACCCGCTTGATCATGCCCCTTGTTCGCAGCTATCGC
TCGCTGTCTTGGATGCCATGTGACTCTCATGGTCATGGTTTGAATCATCG
CAACTGCCATGTATGGGCCTTGTTCGCCTCTTCCAGCTTGATTTTCGATT
GCGATTTCCCGCCTGCGCTGTGTAGAGCCAACCCGAAATCAAAAATCAAA
ATCCAATTTCGATTTCGAGTTTCGATGCA
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Coding sequence (CDS) from alignment at Scaffold_347:196537..200165-

>EsuBft2347_2a-0001 ID=EsuBft2347_2a-0001|Name=EsuBft2347_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_347:196537..200165- (Ectocarpus subulatus male Bft15b)
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCTACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCTTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
TTTCCAGCGCCTTGTCCGTGAGATCGCCCAGGACTTCAAGAGTGACCTCC
GCTTCCAGGGATCGGCCGTGCTCGCTCTGCAGGAGGCTGCCGAGGCCTAC
CTTGTGGGCCTCTTCGAAGACACCAACTTGTGCGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAG
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