EsuBft2334_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2334_4a-0001
Unique Name	EsuBft2334_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_562	contig	Scaffold_562:86432..88974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2334_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	170
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2334_4a	EsuBft2334_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_562 86432..88974 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2334_4a-0001-exon	EsuBft2334_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_562 86432..87397 +
EsuBft2334_4a-0001-exon	agat-exon-94473	Ectocarpus subulatus male Bft15b	exon	Scaffold_562 88238..88974 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2334_4a-0001-exon	agat-five_prime_utr-6019	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_562 86432..86995 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2334_4a-0001-cds	EsuBft2334_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_562 86996..87397 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2334_4a-0001-exon	agat-three_prime_utr-9367	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_562 88580..88974 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2334_4a-0001	EsuBft2334_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_562 86996..88579 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_562:86432..88974+
coding sequence from alignment at Scaffold_562:86432..88974+

spliced messenger RNA

>EsuBft2334_4a-0001 ID=EsuBft2334_4a-0001|Name=EsuBft2334_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1703bp|location=Sequence derived from alignment at Scaffold_562:86432..88974+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAAAACTGTGAGTCACTGGTCTGTCTGCCATATAGGTTCCACTTGAGGCC
CTCTGTCCTCTGTCTAACTGTTCCTCCGCTGGTTCTGCGGATCTTTCCGT
GCGGCCCGCATGCGCATGTATGTCACTGTATGCGCATGACCGGCTACCGC
ACATACTACACCCGCCCGGACATCACTGCCCGGCATATTGTCTTGTCCTC
TCACGCCCGGGGAGATAACGCCCCGGCCGTGCCGATGCTGTGCGCGTCAC
CGCGCCAGCGCAGACTGCGCCACGTCAGGCTGGTTCTGCGTCGACAGGGC
TGAGGATCGGTGTGCTGTGCACACCTCGCCTCCCCCCTCGTCTCTCACTC
TTTTCCCTTTCCCTCTCTTCCCAGAGACCACCACTGGCTCTTCCTAGAGA
AACTACTCTGTCCCGCTGTCTGTCACCAGCGGTCCCCACCGATCGCTCCG
GAAGTCTCCTCTGTCCCTACAGTTGAGAGAAGGTTCAACCCCTTCCATCG
GTCCGAGGTAGCCCATACTCTTATTGGCGTCAGCTCCAGGTTAGCCTGCT
GTCCTCCTCGTACCATGACTTCCGCCGACGACCTCGCCTACCAGCTGTCT
TTGTCCAATTTAGCCAACAACGGCGAATTGCCTACGGATCAACCCGGCGA
ACTCTCCGTCCCACCTGTCGCCGAAGCCCGAGATACTCCGCCCACCAGCG
GAGGCCACGTCGAGGCCAAGGGCTTCGACCCACCGTCACCACCCCCACCC
AACGTCCAGGACCTCGTCATCACCACGTCTCCTCCTCCGTCCGTAGCGTC
CACCGCTGCGCCCTCCGTCGGCGCTCCGTCCGCCTCCTCTTCGTCCACGG
ACCTCACCTCCACGCTCTCCAAGATCCAGTCGGTCGTGGACAGGCACCTC
GACCTGGTCACCGATGGTCGCCTGGAGCAGCTGCCCGACCACGTAGTGCA
GCTGATGGACAGGATGTTCGAACACCACCGCCAGAACCGAGGACGCACTC
CGGCGTTCCAGTCGGGATCCTCGTCCGGGGGTGGCTCGTCCTCGTCCGGG
GGCAAGGCGCCTCGCCACGGCACCCACCGCGGCGGTGGTGGCAACTCCCG
TCGTCCCGTCCGCAAGGAGCGCCCCAGGTGCACCCACCCCACGTGCGACA
AGCCCCTGGGGCACACGACCGCAACATGCTTCCAGAAGAAGCGTGAAGAA
GCGGCAACCGAGCGCAACCGGCGGCGCAACCAGCCGACGGCCAAGCGTCC
GTGCGCGGAAGACCGCACGCCTCGCAGCAAAGATGCGAGCACCGATGATG
ACGAGTAGGGGTGCCCAGCTAGCGTAGCGCCTGCGGTAGTAGGGTCGTCT
CCTGCAGTTGGCAGGAAAGGCGCGAAGAGAAAACTCTCCGCGTCAGTAGC
TGTCGGTACACCTGCTTTTGTTGTGCCCCGTGTCCCTGTCCGTAACGGTA
GTTACGTAGTGCCTAGAGTACGTCGTCGTCCTCATGGCACTGAGAGAAAG
CTTTTAGGTCTCACTGCTTTGTCTGAATTTCGTGTCCCCTCCCCGGTGCT
TGATGCCGAAGAGGTACAGCCTCTGCCATCGTCGCGTAAACGTCCTGCGT
GTGATAGTAGAAGCGCTGTGTCTTCAACTCCCTTGAGTGTGCCCATCTGT
AGCCGCGACGGCGATGTCGCCCCGCAGAAACGAGTCACTTTTGCTGAAGT
TGA

protein sequence of EsuBft2334_4a-0001

>EsuBft2334_4 ID=EsuBft2334_4|Name=EsuBft2334_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MTSADDLAYQLSLSNLANNGELPTDQPGELSVPPVAEARDTPPTSGGHVE
AKGFDPPSPPPPNVQDLVITTSPPPSVASTAAPSVGAPSASSSSTDLTST
LSKIQSVVDRHLDLVTDGRLEQLPDHVVQLMDRMFEHHRQNRGRTPAFQS
GSSSGGGSSSSGGKAPRHGTHRGGGGNSRRPVRKERPRCTHPTCDKPLGH
TTATCFQKKREEAATERNRRRNQPTAKRPCAEDRTPRSKDASTDDDE

mRNA from alignment at Scaffold_562:86432..88974+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2334_4a-0001 ID=EsuBft2334_4a-0001|Name=EsuBft2334_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2543bp|location=Sequence derived from alignment at Scaffold_562:86432..88974+ (Ectocarpus subulatus male Bft15b)
TAAAACTGTGAGTCACTGGTCTGTCTGCCATATAGGTTCCACTTGAGGCC
CTCTGTCCTCTGTCTAACTGTTCCTCCGCTGGTTCTGCGGATCTTTCCGT
GCGGCCCGCATGCGCATGTATGTCACTGTATGCGCATGACCGGCTACCGC
ACATACTACACCCGCCCGGACATCACTGCCCGGCATATTGTCTTGTCCTC
TCACGCCCGGGGAGATAACGCCCCGGCCGTGCCGATGCTGTGCGCGTCAC
CGCGCCAGCGCAGACTGCGCCACGTCAGGCTGGTTCTGCGTCGACAGGGC
TGAGGATCGGTGTGCTGTGCACACCTCGCCTCCCCCCTCGTCTCTCACTC
TTTTCCCTTTCCCTCTCTTCCCAGAGACCACCACTGGCTCTTCCTAGAGA
AACTACTCTGTCCCGCTGTCTGTCACCAGCGGTCCCCACCGATCGCTCCG
GAAGTCTCCTCTGTCCCTACAGTTGAGAGAAGGTTCAACCCCTTCCATCG
GTCCGAGGTAGCCCATACTCTTATTGGCGTCAGCTCCAGGTTAGCCTGCT
GTCCTCCTCGTACCATGACTTCCGCCGACGACCTCGCCTACCAGCTGTCT
TTGTCCAATTTAGCCAACAACGGCGAATTGCCTACGGATCAACCCGGCGA
ACTCTCCGTCCCACCTGTCGCCGAAGCCCGAGATACTCCGCCCACCAGCG
GAGGCCACGTCGAGGCCAAGGGCTTCGACCCACCGTCACCACCCCCACCC
AACGTCCAGGACCTCGTCATCACCACGTCTCCTCCTCCGTCCGTAGCGTC
CACCGCTGCGCCCTCCGTCGGCGCTCCGTCCGCCTCCTCTTCGTCCACGG
ACCTCACCTCCACGCTCTCCAAGATCCAGTCGGTCGTGGACAGGCACCTC
GACCTGGTCACCGATGGTCGCCTGGAGCAGCTGCCCGACCACGTAGTGCA
GCTGATGGACAGGATGGTGAGTCTGCGTGCAGTCGCCGTTAGGGCGGAAT
CCAGTTCCCCGCCTGTGTCTGTCGGTGCTTCGTCGCACACCCCCTCTGTC
CCGGACTTGACCCGTTCGTTCGCTGCCGCGTTGTCGCGGCAGAAGCATGT
CGTGTTGACCCCTGTTGATGTCAAGCAAGTCCCCCGTCTAACTGGTAAAA
GCGACGTAGATGTCAACTCTGTCATGTCCCAGTACCGCCTTATCGCGGGA
TTCAAAGTCAAGGGTTCGTACCCTACCAACACCCCTGTCACGGAAATCGA
CAACCGCGCTGATGCCGTTGCATTCGAATCCATCTCTCTCATCTGCGACG
GTCCCGTCTTGCAGATCTACCAACAAATGATGTCTGGGAAAATCGATTGT
TCCGCAACCTCTGGCTCGTACCACGCTGTAGAACAAGCGAACTCTTACCC
ACCGCCCACCACATGGGTAGAGCTCAAAACTGCTCTTCTAGATGTCCTCA
TGCCCTCCAACTGTGTTGAAGAGAGCGCACTCCGTCTAGTCAACCTCCGT
CAAGAGGCCAACGAGAATGTCAGCTCGTATGCCCTTCGTCTGCAAACCAA
CTGTACTAGGTTTGAACATGCTGTCACTAGGGCTACCCCAGGCCGCTCGC
CGTACCAAGCACTTGTGGTAGTCCTCTTTCAAAATGGCCTTGTCCCGACT
ATTCGGTCCAAAGTTCTTGATAAGAAACCTGTCAAAGCCCTTCGGGAGGC
TATCGATCGCGCTCGCCGTACCGAGTCCGCGAACTTGTCTGGTAAAACCC
CTGCTGTCAGCGCCGTCTCGCTCACTCCTACCTCGTCCCGTCCCGTGTCA
CAAAAGTTCGAACACCACCGCCAGAACCGAGGACGCACTCCGGCGTTCCA
GTCGGGATCCTCGTCCGGGGGTGGCTCGTCCTCGTCCGGGGGCAAGGCGC
CTCGCCACGGCACCCACCGCGGCGGTGGTGGCAACTCCCGTCGTCCCGTC
CGCAAGGAGCGCCCCAGGTGCACCCACCCCACGTGCGACAAGCCCCTGGG
GCACACGACCGCAACATGCTTCCAGAAGAAGCGTGAAGAAGCGGCAACCG
AGCGCAACCGGCGGCGCAACCAGCCGACGGCCAAGCGTCCGTGCGCGGAA
GACCGCACGCCTCGCAGCAAAGATGCGAGCACCGATGATGACGAGTAGGG
GTGCCCAGCTAGCGTAGCGCCTGCGGTAGTAGGGTCGTCTCCTGCAGTTG
GCAGGAAAGGCGCGAAGAGAAAACTCTCCGCGTCAGTAGCTGTCGGTACA
CCTGCTTTTGTTGTGCCCCGTGTCCCTGTCCGTAACGGTAGTTACGTAGT
GCCTAGAGTACGTCGTCGTCCTCATGGCACTGAGAGAAAGCTTTTAGGTC
TCACTGCTTTGTCTGAATTTCGTGTCCCCTCCCCGGTGCTTGATGCCGAA
GAGGTACAGCCTCTGCCATCGTCGCGTAAACGTCCTGCGTGTGATAGTAG
AAGCGCTGTGTCTTCAACTCCCTTGAGTGTGCCCATCTGTAGCCGCGACG
GCGATGTCGCCCCGCAGAAACGAGTCACTTTTGCTGAAGTTGA

Coding sequence (CDS) from alignment at Scaffold_562:86432..88974+

>EsuBft2334_4a-0001 ID=EsuBft2334_4a-0001|Name=EsuBft2334_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_562:86432..88974+ (Ectocarpus subulatus male Bft15b)
ATGACTTCCGCCGACGACCTCGCCTACCAGCTGTCTTTGTCCAATTTAGC
CAACAACGGCGAATTGCCTACGGATCAACCCGGCGAACTCTCCGTCCCAC
CTGTCGCCGAAGCCCGAGATACTCCGCCCACCAGCGGAGGCCACGTCGAG
GCCAAGGGCTTCGACCCACCGTCACCACCCCCACCCAACGTCCAGGACCT
CGTCATCACCACGTCTCCTCCTCCGTCCGTAGCGTCCACCGCTGCGCCCT
CCGTCGGCGCTCCGTCCGCCTCCTCTTCGTCCACGGACCTCACCTCCACG
CTCTCCAAGATCCAGTCGGTCGTGGACAGGCACCTCGACCTGGTCACCGA
TGGTCGCCTGGAGCAGCTGCCCGACCACGTAGTGCAGCTGATGGACAGGA
TGTTCGAACACCACCGCCAGAACCGAGGACGCACTCCGGCGTTCCAGTCG
GGATCCTCGTCCGGGGGTGGCTCGTCCTCGTCCGGGGGCAAGGCGCCTCG
CCACGGCACCCACCGCGGCGGTGGTGGCAACTCCCGTCGTCCCGTCCGCA
AGGAGCGCCCCAGGTGCACCCACCCCACGTGCGACAAGCCCCTGGGGCAC
ACGACCGCAACATGCTTCCAGAAGAAGCGTGAAGAAGCGGCAACCGAGCG
CAACCGGCGGCGCAACCAGCCGACGGCCAAGCGTCCGTGCGCGGAAGACC
GCACGCCTCGCAGCAAAGATGCGAGCACCGATGATGACGAGTAG