EsuBft2334_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2334_3a-0001
Unique NameEsuBft2334_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:77446..81035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2334_3
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length236
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000700.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2334_3aEsuBft2334_3aEctocarpus subulatus male Bft15bgeneScaffold_562 77446..81035 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2334_3a-0001-exonagat-exon-94472Ectocarpus subulatus male Bft15bexonScaffold_562 77446..79728 -
EsuBft2334_3a-0001-exonEsuBft2334_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 80950..81035 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2334_3a-0001-exonagat-three_prime_utr-9366Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_562 77446..79509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2334_3a-0001-cdsEsuBft2334_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 79510..79728 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2334_3a-0001-exonagat-five_prime_utr-6018Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_562 80995..81035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2334_3a-0001EsuBft2334_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 79510..80994 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2334_3a-0001 ID=EsuBft2334_3a-0001|Name=EsuBft2334_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2369bp|location=Sequence derived from alignment at Scaffold_562:77446..81035- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGACCTCCCTGATGACACGACTGATCCGCGGGCGTACTGGATGACCCAG
CATGGAGTTCTACAGGGCGAGGCGGCGCGATTTCAGGCTTTGGCAGAGAC
AGACCCTGACGCGGCAGTACAGCTCCAGGCCATCAACGCACAGCTCAAGG
CGGTTTCGCAGAGGATCCGCAACTACGATGAGGAAAAGGCCGACGAGCTC
GAGGAAGAACAGGAAGCGCAGAGCCGAGGGAGGACCCAGCTCTGCTTATT
CTTGGTCTTGCTAGCGGTGGGGCTGGTGGCTATTGCGGTTTGGGCTCTGA
GCTAGGCTGTTGCTTGCCGCAACGGCATGTGTGTAACGGTCGGTTGGGGA
AGAGGGGAAATATCTCGGAAATTTCCGCGATTTGACAATGGATCTCGCTT
GGGGTTGAGGCGGGATGGATGAGCGAGGACGTTGACCAGGCAGACTCATT
TTTTTTGTTTTTCTGCATTTAAACGCGCCTCGCGCACCACCAGCACAGAA
AATGCATACGAAGGGTGCGCGTGTTCGTTCATAAATTCGGACCGTGGGGA
CGATCTCCCAGTTATTTGTTTTTTCCTGTCCTACGAACTTTGTATTTTTG
TCTTGTACTGCTGTATTGTACCCGAACGTGAGGGCACGCCCGTTGGTTGC
GCGGGAAAACCAGGTGCGGAAACATGTTCCCCTTAATGTTTATCTGATTT
ACGTTGCTGAGTGTTGCTCTTCAAAGTTTCGCATGTCAGTCAAACGTGTA
TCTTTGCTAGTCATTGGTGCATCCTTCCAAACTTTTTCTGTGTAATTACG
AGAAACAAACCAGGTTGTCCCTTCGCGCGACTCCCCCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCGCGGGCGCGC
TCCAGCTACTCAAAGCGGTCTACCTAATCAAGGTTTCACTTCGACTGTAA
TTCCCTGGCTGCTGTTGAATTTGTGAGCGTACTCTGCTGTTTTGGTGAAG
TTCTGGTGAACTTTCCGGTGCAGGGTGTTTGTCTTGTGAGATACGGGTGT
AGACACGCATGCATGTGCTTGGTCCCCTTTTTTGTTTTGGTCCTTCTAAA
TATTGCCATGCATGTTCCCCGCTTCTGTTATCTTCGCTTGCCGGAGGGAG
ATGAAGCGATGTCCACACATGTGGAATCTATCATAACGTACCAAAAATGT
TGGCGTCGCTTGCTCGCGTGTCTGATTTCTGCTTTCACTTGTTGGGTGCT
GTACGCTGCCTGAGCGTAAATCACATCACAAAATAAAATGGCAGCTGAGT
GGCCCACCCCCATGCCCAGGTTTCGGCGAGAGCCACCGTTTTCATTCCCC
CCTCTCGGGCACAGCCATGGAGCGACGATGTTCAATGATTGGCAACGCTC
CGCCAAGCATGGTGATAGCCTGTCGCCGTCGATGCTAGTGTGGCGTACTC
GGCTGTCGAAGTTATTGGTTGCTGGGAGGGAAGTTTAGGAGTGTTGTTAT
GACTTTCCGGTATATGCTTGAATCAATGCTGCCTTCTTGCTTTATGTTTT
CAGTTATCCTTTTCTTGCCTAGCTTCTCTACTGGAACGACTTGTGCACAG
ACCTGTTTCTGAGCACTTGATAATTTTTAGGAAGTACCGGTTTTATTTCT
TCGGCCTATCGAGTCATTGTTGGGCTTGTTGTCAAATGAAGACTGCATAG
TGCCGGTGTGGGATTCCGATTTGAACGCTTTCGTCGCCCACTTTTCCCTT
CGAAGGCTTTATCCGTGGATGGAGATGTCATCTATGTTTGGGGTTTGCTG
GCGTCCACGCCCCTGTGGTCGAGTATTGGTCCCATGCATGGCTTGAGTTC
CGTTGCCTCTCTTTTTTCGTGCTGTTTGGTATTTTGGTCGAGTATTTGTC
GCTTTTCTTCATTTTGTTGGGGAATTTTGGTCGAGTATTGGTCCCATGTG
GTTAACTCCGTTGCCTCCTTTTTCGTGTTATGACTGGCGCTACGGTCAAG
GGTGCACTTTGGAGGGCGAAATGTTGCACTTTTGTGAAAAAATGTGTAGT
CCTGTTTGGGCGATCTTACGGCGAAATAGGACTACGCGGCCGTCAGGTTT
TCGCAGAGCGTGTCTCCCTACCCGAAAGTTAAAGACGAGGTAACACCCCT
ACCGCAGCATCTGGGGGTGGTTTGAATCTGGTCAGAAGAAGCCGCTAAAT
AGCGGATGCGTGCGTCGGTGTCCCGTAGAGTGCCTTTCTCTTGGGGTACG
TTCTTTTCTCTTGGGGTACGTGGGTTAGGAAAAGCACGGAGACATGCAGC
ACTTTTCGATCACGAGAAA
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protein sequence of EsuBft2334_3a-0001

>EsuBft2334_3 ID=EsuBft2334_3|Name=EsuBft2334_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=87bp
MTQHGVLQGEAARFQALAETDPDAAVQLQAINAQLKAVSQRIRNYDEEKA
DELEEEQEAQSRGRTQLCLFLVLLAVGLVAIAVWALS
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mRNA from alignment at Scaffold_562:77446..81035-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2334_3a-0001 ID=EsuBft2334_3a-0001|Name=EsuBft2334_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3590bp|location=Sequence derived from alignment at Scaffold_562:77446..81035- (Ectocarpus subulatus male Bft15b)
CAGACCTCCCTGATGACACGACTGATCCGCGGGCGTACTGGATGACCCAG
CATGGAGTTCTACAGGGCGAGGCGGCGCGATTTCAGGTGTGTGCTGTATT
TTTCACTCACAGATACACAACGAATTGATTGATCTCGTCCACAGATAAAA
GCAGTCCGGGATAGCTTAGCAATGAGCCCGTCGCGTTACGTGATGACCGT
TTTGTGTTGTTTGCATCGACCGTGCGCTGTCCGCCTAGCCCACGAAAAAA
CTCCAGTCGTTTGTACAGCGAGATTAAAGGGCGAGGGCATTTTCTAGTTC
GCCTCCCCCCTCCGAGGCAATGGCAACCCAGGGGCGCTTCGTTTTGTGGT
GTGCTACCGTCGGTCCAGGTTAGCCTGGATTCGGCGCGGTAATATTTTCC
TTGGCGCGAGGGCAAGCATTGGCGTTGCCCGCAGCGAAGTGCACCATGCT
TCTTGAAAAACTATTTCACAGACACAACAACTCATGATGTTTTCTCCCAC
CTCGTCCTCTTCTGTCTTGAGAGCAAGGTGTAGATTCATATGCAGAGAAG
GAGAATTGTGGGGACTCGATACTTGTGTAACAAATGGCACGTCTTTGCTT
GAAAAGTATCCTTTATCGTGTTATTCACACCCCGCCGTTGACCAAGACGG
GTACGCAAACAAAAAGGGCAACTTCCAGTTGTGCCCAGAAGTTCAGTCAC
GCGGTGTTGTTTTCATTTCGGAAGATCTCAAGCAACGAAATTGTCGCCGT
GTACGTGCAAGTGGTGTTGCCTCAATCCACGGCTGAGCTCAACACTTAAC
TAAACAGGTGTTCTCCTTTTAAATGAAGTGATACGCAAGCGGATTTACAC
GAACACCATTTCTGACAACCTTGCGCAGGACTGTTCTCGATCGTCGACTC
CATGGTTCTACTAGGTATCGTACGAGTTACTCCTGACTACAAGTTTACCA
CCCGAAGAAGCTAGAATACCGTAGGCTGCATGAGACGCTGCACCCCCTTG
ACCGATTGCCAAAGCTTGGCGTAACTTCGGCGAAACCAGTGACAGTGCCA
CCAGTCGGAACTGTCTCGTCGACCACTTTCCGAAACGGTATATTTTGATT
GTGACATTTTGATCATGACATCCTATATATGTCGTGATGTATGTAGTCGA
GCCTTGAGAACTGTTTCGCGGGTGTGGTATATTACGCTGTTACCATATTA
TGTATATGTTAGTTGTATCATACTGCTTGAGTACCGTATTGCTGGCTTTT
GTTTGCCAATCGCGCTTGTCTGACAAGACGGTTGCGCTCTGTCACGGCGG
TGTTCAGGCTTTGGCAGAGACAGACCCTGACGCGGCAGTACAGCTCCAGG
CCATCAACGCACAGCTCAAGGCGGTTTCGCAGAGGATCCGCAACTACGAT
GAGGAAAAGGCCGACGAGCTCGAGGAAGAACAGGAAGCGCAGAGCCGAGG
GAGGACCCAGCTCTGCTTATTCTTGGTCTTGCTAGCGGTGGGGCTGGTGG
CTATTGCGGTTTGGGCTCTGAGCTAGGCTGTTGCTTGCCGCAACGGCATG
TGTGTAACGGTCGGTTGGGGAAGAGGGGAAATATCTCGGAAATTTCCGCG
ATTTGACAATGGATCTCGCTTGGGGTTGAGGCGGGATGGATGAGCGAGGA
CGTTGACCAGGCAGACTCATTTTTTTTGTTTTTCTGCATTTAAACGCGCC
TCGCGCACCACCAGCACAGAAAATGCATACGAAGGGTGCGCGTGTTCGTT
CATAAATTCGGACCGTGGGGACGATCTCCCAGTTATTTGTTTTTTCCTGT
CCTACGAACTTTGTATTTTTGTCTTGTACTGCTGTATTGTACCCGAACGT
GAGGGCACGCCCGTTGGTTGCGCGGGAAAACCAGGTGCGGAAACATGTTC
CCCTTAATGTTTATCTGATTTACGTTGCTGAGTGTTGCTCTTCAAAGTTT
CGCATGTCAGTCAAACGTGTATCTTTGCTAGTCATTGGTGCATCCTTCCA
AACTTTTTCTGTGTAATTACGAGAAACAAACCAGGTTGTCCCTTCGCGCG
ACTCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCCCCGCGGGCGCGCTCCAGCTACTCAAAGCGGTCTACCTAATC
AAGGTTTCACTTCGACTGTAATTCCCTGGCTGCTGTTGAATTTGTGAGCG
TACTCTGCTGTTTTGGTGAAGTTCTGGTGAACTTTCCGGTGCAGGGTGTT
TGTCTTGTGAGATACGGGTGTAGACACGCATGCATGTGCTTGGTCCCCTT
TTTTGTTTTGGTCCTTCTAAATATTGCCATGCATGTTCCCCGCTTCTGTT
ATCTTCGCTTGCCGGAGGGAGATGAAGCGATGTCCACACATGTGGAATCT
ATCATAACGTACCAAAAATGTTGGCGTCGCTTGCTCGCGTGTCTGATTTC
TGCTTTCACTTGTTGGGTGCTGTACGCTGCCTGAGCGTAAATCACATCAC
AAAATAAAATGGCAGCTGAGTGGCCCACCCCCATGCCCAGGTTTCGGCGA
GAGCCACCGTTTTCATTCCCCCCTCTCGGGCACAGCCATGGAGCGACGAT
GTTCAATGATTGGCAACGCTCCGCCAAGCATGGTGATAGCCTGTCGCCGT
CGATGCTAGTGTGGCGTACTCGGCTGTCGAAGTTATTGGTTGCTGGGAGG
GAAGTTTAGGAGTGTTGTTATGACTTTCCGGTATATGCTTGAATCAATGC
TGCCTTCTTGCTTTATGTTTTCAGTTATCCTTTTCTTGCCTAGCTTCTCT
ACTGGAACGACTTGTGCACAGACCTGTTTCTGAGCACTTGATAATTTTTA
GGAAGTACCGGTTTTATTTCTTCGGCCTATCGAGTCATTGTTGGGCTTGT
TGTCAAATGAAGACTGCATAGTGCCGGTGTGGGATTCCGATTTGAACGCT
TTCGTCGCCCACTTTTCCCTTCGAAGGCTTTATCCGTGGATGGAGATGTC
ATCTATGTTTGGGGTTTGCTGGCGTCCACGCCCCTGTGGTCGAGTATTGG
TCCCATGCATGGCTTGAGTTCCGTTGCCTCTCTTTTTTCGTGCTGTTTGG
TATTTTGGTCGAGTATTTGTCGCTTTTCTTCATTTTGTTGGGGAATTTTG
GTCGAGTATTGGTCCCATGTGGTTAACTCCGTTGCCTCCTTTTTCGTGTT
ATGACTGGCGCTACGGTCAAGGGTGCACTTTGGAGGGCGAAATGTTGCAC
TTTTGTGAAAAAATGTGTAGTCCTGTTTGGGCGATCTTACGGCGAAATAG
GACTACGCGGCCGTCAGGTTTTCGCAGAGCGTGTCTCCCTACCCGAAAGT
TAAAGACGAGGTAACACCCCTACCGCAGCATCTGGGGGTGGTTTGAATCT
GGTCAGAAGAAGCCGCTAAATAGCGGATGCGTGCGTCGGTGTCCCGTAGA
GTGCCTTTCTCTTGGGGTACGTTCTTTTCTCTTGGGGTACGTGGGTTAGG
AAAAGCACGGAGACATGCAGCACTTTTCGATCACGAGAAA
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Coding sequence (CDS) from alignment at Scaffold_562:77446..81035-

>EsuBft2334_3a-0001 ID=EsuBft2334_3a-0001|Name=EsuBft2334_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_562:77446..81035- (Ectocarpus subulatus male Bft15b)
ATGACCCAGCATGGAGTTCTACAGGGCGAGGCGGCGCGATTTCAGGCTTT
GGCAGAGACAGACCCTGACGCGGCAGTACAGCTCCAGGCCATCAACGCAC
AGCTCAAGGCGGTTTCGCAGAGGATCCGCAACTACGATGAGGAAAAGGCC
GACGAGCTCGAGGAAGAACAGGAAGCGCAGAGCCGAGGGAGGACCCAGCT
CTGCTTATTCTTGGTCTTGCTAGCGGTGGGGCTGGTGGCTATTGCGGTTT
GGGCTCTGAGCTAG
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