EsuBft2333_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2333_5a-0001
Unique NameEsuBft2333_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:385534..387034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G6Q2
ProteomeIdEsuBft2333_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length91
Hectar predicted targeting categorysignal peptide
Evalue1.15e-66
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_5aEsuBft2333_5aEctocarpus subulatus male Bft15bgeneScaffold_242 385534..387034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_5a-0001-exonagat-exon-480Ectocarpus subulatus male Bft15bexonScaffold_242 385534..386136 -
EsuBft2333_5a-0001-exonEsuBft2333_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 386556..386562 -
EsuBft2333_5a-0001-exonagat-exon-479Ectocarpus subulatus male Bft15bexonScaffold_242 386727..387034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_5a-0001-cdsEsuBft2333_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 385534..386136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_5a-0001EsuBft2333_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 385534..387034 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2333_5a-0001 ID=EsuBft2333_5a-0001|Name=EsuBft2333_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=918bp|location=Sequence derived from alignment at Scaffold_242:385534..387034- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCCTCCACCGTGCCAGGATGGGCCATGAGCGGTACGCTGAGTG
CATGCGCATCGTCATGCTCGCGGCAGTGTGCGGAGTGCTAGGTGAGGAGG
ACCTATTACTCGTTGTGGGCGCATGTTGGGTGGTGAAATGGCCCGCGTTC
CAAGAGCTCGTCGCGCCGACACATCTAGATGGCGTGAGGTACGACTTCAT
GGAGGTGCTTGGTGGGTTCGACTTCAAGGAACTGTTGAGGTTCGAGAAGC
CCCACTTCCGTCGGCTTGTGGCGGCGCTGGAGCTTCCACCCGAGTTCGTG
ATTTCGGGGCTAAGGGGGGGGAGAGGAGTGCTAATAATTCCGGCACATCT
GTGTTTGGCAGTCACTCTGTGGAGATTTTCTGCGCCAACGACGTTGCTAC
GCGATCGCCTGTTCTGGGGCATGGGGGAGACACTCGTTTGCGAGGTGTTC
AATGTCACCATTGAGGCTATATACGATCGATGGGGACACCTTGTGCGGGA
TTTGCAGGTCGATGCTATTCTTCCTAAGATAGACGACTTCTGTGAAGCAA
CATCTAGCCGCGGCTCGCCCCTTCCACGTTGTTGTGGGGCTTCCTCGATG
GCACAATTCGAAAAATCTGTCGTCCTGGTCGTTGGCAACGTCTGTACTAC
NACGACGTTGCTACGCGATCGCCTGTTCTGGGGCATGGGGGAGACACTCG
TTTGCGAGGTGTTCAATGTCACCATTGAGGCTATATACGATCGATGGGGA
CACCTTGTGCGGGATTTGCAGGTCGATGCTATTCTTCCTAAGATAGACGA
CTTCTGTGAAGCAACATCTAGCCGCGGCTCGCCCCTTCCACGTTGTTGTG
GGGCTTCCTCGATGGCACAATTCGAAAAATCTGTCGTCCTGGTCGTTGGC
AACGTCTGTACTACATAA
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protein sequence of EsuBft2333_5a-0001

>EsuBft2333_5 ID=EsuBft2333_5|Name=EsuBft2333_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=305bp
MARLHRARMGHERYAECMRIVMLAAVCGVLGEEDLLLVVGACWVVKWPAF
QELVAPTHLDGVRYDFMEVLGGFDFKELLRFEKPHFRRLVAALELPPEFV
ISGLRGGRGVLIIPAHLCLAVTLWRFSAPTTLLRDRLFWGMGETLVCEVF
NVTIEAIYDRWGHLVRDLQVDAILPKIDDFCEATSSRGSPLPRCCGASSM
AQFEKSVVLVVGNVCTTTTLLRDRLFWGMGETLVCEVFNVTIEAIYDRWG
HLVRDLQVDAILPKIDDFCEATSSRGSPLPRCCGASSMAQFEKSVVLVVG
NVCTT
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mRNA from alignment at Scaffold_242:385534..387034-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2333_5a-0001 ID=EsuBft2333_5a-0001|Name=EsuBft2333_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1501bp|location=Sequence derived from alignment at Scaffold_242:385534..387034- (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTCCACCGTGCCAGGATGGGCCATGAGCGGTACGCTGAGTG
CATGCGCATCGTCATGCTCGCGGCAGTGTGCGGAGTGCTAGGTGAGGAGG
ACCTATTACTCGTTGTGGGCGCATGTTGGGTGGTGAAATGGCCCGCGTTC
CAAGAGCTCGTCGCGCCGACACATCTAGATGGCGTGAGGTACGACTTCAT
GGAGGTGCTTGGTGGGTTCGACTTCAAGGAACTGTTGAGGTTCGAGAAGC
CCCACTTCCGTCGGCTTGTGGCGGCGCTGGAGCTTCCACCCGAGTTCGTG
ATTTCGGGGTGAGATGGCACGCTGCGGCATGAAATCTCATGCCTCTGGTC
CTTGGTCCTCTTGGGTCAGCAGTAGTCTAATGCCGCACACAAGCGAACGA
CCGTGCAGCAGTGGACCCCTAGGGAATATTGAGGCTCGTGGATGCTGCCA
AGGCGGGTTGTTGCATATGCAGGCTAAGGGTTAGGGCAATGCGTTTGGTG
TCGATTCGCAGCGACCCTCTTCTGGACGTAGTCCTACCACTCCGGAAATT
TTTGAATTTTGAAGATGTCCGCCTCTCTCTGTCGGTTTAGGCGACTACTA
CTGCTGTTGCGGCCACCAAAAAGAGGTTCAGGTTTAGGGGTAGGAGACGG
AGGTCTAAAAGCGATGAAACTCCCGGGGTGACTCACGCTTGTGACTGTCC
CACGATCCGCTCTTAGAGGAAACAACACTGAAACACCATTGTGTGCTTTA
GACTAGTCTAGTGTTCCTGTGATACGCCGTAGGGTTACCCTGCTCATCTT
GCTTCTCTTCGTCGAGGTGTCCCCCAACCTCTCCATAACCCCGACTCCCT
GTTCCCGTGTTGTATTTTTGATCTCGCCTCGAATTTGTCACTGGGCAGGG
GGGGAGAGGAGTGCTAATAATTCCGGCACATCTGTGTTTGGCAGTCACTC
TGTGGAGATTTTCTGCGCCAACGACGTTGCTACGCGATCGCCTGTTCTGG
GGCATGGGGGAGACACTCGTTTGCGAGGTGTTCAATGTCACCATTGAGGC
TATATACGATCGATGGGGACACCTTGTGCGGGATTTGCAGGTCGATGCTA
TTCTTCCTAAGATAGACGACTTCTGTGAAGCAACATCTAGCCGCGGCTCG
CCCCTTCCACGTTGTTGTGGGGCTTCCTCGATGGCACAATTCGAAAAATC
TGTCGTCCTGGTCGTTGGCAACGTCTGTACTACNACGACGTTGCTACGCG
ATCGCCTGTTCTGGGGCATGGGGGAGACACTCGTTTGCGAGGTGTTCAAT
GTCACCATTGAGGCTATATACGATCGATGGGGACACCTTGTGCGGGATTT
GCAGGTCGATGCTATTCTTCCTAAGATAGACGACTTCTGTGAAGCAACAT
CTAGCCGCGGCTCGCCCCTTCCACGTTGTTGTGGGGCTTCCTCGATGGCA
CAATTCGAAAAATCTGTCGTCCTGGTCGTTGGCAACGTCTGTACTACATA
A
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Coding sequence (CDS) from alignment at Scaffold_242:385534..387034-

>EsuBft2333_5a-0001 ID=EsuBft2333_5a-0001|Name=EsuBft2333_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=918bp|location=Sequence derived from alignment at Scaffold_242:385534..387034- (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTCCACCGTGCCAGGATGGGCCATGAGCGGTACGCTGAGTG
CATGCGCATCGTCATGCTCGCGGCAGTGTGCGGAGTGCTAGGTGAGGAGG
ACCTATTACTCGTTGTGGGCGCATGTTGGGTGGTGAAATGGCCCGCGTTC
CAAGAGCTCGTCGCGCCGACACATCTAGATGGCGTGAGGTACGACTTCAT
GGAGGTGCTTGGTGGGTTCGACTTCAAGGAACTGTTGAGGTTCGAGAAGC
CCCACTTCCGTCGGCTTGTGGCGGCGCTGGAGCTTCCACCCGAGTTCGTG
ATTTCGGGGCTAAGGGGGGGGAGAGGAGTGCTAATAATTCCGGCACATCT
GTGTTTGGCAGTCACTCTGTGGAGATTTTCTGCGCCAACGACGTTGCTAC
GCGATCGCCTGTTCTGGGGCATGGGGGAGACACTCGTTTGCGAGGTGTTC
AATGTCACCATTGAGGCTATATACGATCGATGGGGACACCTTGTGCGGGA
TTTGCAGGTCGATGCTATTCTTCCTAAGATAGACGACTTCTGTGAAGCAA
CATCTAGCCGCGGCTCGCCCCTTCCACGTTGTTGTGGGGCTTCCTCGATG
GCACAATTCGAAAAATCTGTCGTCCTGGTCGTTGGCAACGTCTGTACTAC
NACGACGTTGCTACGCGATCGCCTGTTCTGGGGCATGGGGGAGACACTCG
TTTGCGAGGTGTTCAATGTCACCATTGAGGCTATATACGATCGATGGGGA
CACCTTGTGCGGGATTTGCAGGTCGATGCTATTCTTCCTAAGATAGACGA
CTTCTGTGAAGCAACATCTAGCCGCGGCTCGCCCCTTCCACGTTGTTGTG
GGGCTTCCTCGATGGCACAATTCGAAAAATCTGTCGTCCTGGTCGTTGGC
AACGTCTGTACTACATAA
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