EsuBft2333_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2333_4a-0001
Unique Name	EsuBft2333_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:381684..385428 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2333_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	363
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2333_4a	EsuBft2333_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 381684..385428 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2333_4a-0001	EsuBft2333_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 382276..382512 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2333_4a-0001-exon	agat-exon-478	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 381684..385014 +
EsuBft2333_4a-0001-exon	EsuBft2333_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 385125..385428 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2333_4a-0001-exon	agat-five_prime_utr-6017	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 381684..382275 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2333_4a-0001-cds	EsuBft2333_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 382276..382512 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2333_4a-0001-exon	agat-three_prime_utr-9363	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 382513..385014 +
EsuBft2333_4a-0001-exon	agat-three_prime_utr-9364	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 385125..385428 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:381684..385428+
coding sequence from alignment at Scaffold_242:381684..385428+

spliced messenger RNA

>EsuBft2333_4a-0001 ID=EsuBft2333_4a-0001|Name=EsuBft2333_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3635bp|location=Sequence derived from alignment at Scaffold_242:381684..385428+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NCTGCAGCAGCCTCCCTCGTGCTTCCTTGGGGCAGACCAACAAGTGCTCC
CAAGTCTACTCTTCTGGTCAGGTTTCAGACACTTCACGCTTACTCCATGC
TGCTGCACACTGATTGGCCAACAGATATTTCAACTTCCGCTCCTCACAAA
ACTCAGATTTCAACGCCTCTGTCTCTGCAATCTTCTGCTTTGTTCGTTGC
TTTCGAAATTGCATTAATTGGTCGTACCCCCCCACGCTTGAACAGGGGGG
GGAGAGAAGAGCGGAACTCGGGGATCTCAACCTATCATCGTCCACAACAC
CATCAGTATAAACCAGTCACCGCACCATCAGGCATACTCTCAAAGTCATG
CCTGCCCCCAATCTAACCGCGGACTGGTTTCCATACTGATCTGTACTCTC
TCTCCCCCCCTACCGTGGTTCCCACTCTTGTACCGACCAATAAACCCTGA
TCGCATTCACTCCCCCCTCCTTTTACGGCTCGCCCTCACCAGCCTCGGGG
ACTACGTCACCCCACTCTGTACCCTGTCCTGGTTGCCTCTCTGAATCACC
CTCCGACGCCAAGGTACTAGAAACCCACTCTGCATCTTTCCCATGGTTCC
TTACGTACGGCCGATACCCCGATTCCCCAGTCCATCTCCCCTCTCGTCTC
AGAACTTCTGGCGACGCTCCCCCCGCTGCCAAGTACGTGGCGCCCCCAAT
CCGAAGAGAATGCAACGCGTACTCGGACGACGGCAGACCTGCCAACGACA
CGACTTGCCGCAGCGCTTCCGTCGCGTGACGACGAGTCCACACGGACCAT
CGCCCCTCCCCGGTTCCGAACTCGACTAACGGAGAAGACGAAGGGAGAAC
AGGGAAGCATGAAAGGAGTTCAATCGTCACATCGACTGCACCCCCCCTCC
ACTCCACAGACTGGGGAGGCCCCGGCCTCGCCCGTGTACACACGGCGCCC
TTCCGAAACTGGTCGCCTTTGGACGACCGAAACCGCACCTCGACTCTGTC
GGCCTCTCCCCTCCGTTCCGGAGGCAACTGGCGAGAACCCAAAAAAAACG
CCACGTCCCCCCGACGCAACCCATGACAAGAATCCATGGCCAACGAGGAC
ACAGCGAACATTTCGCATGCCCGCATCAAGAAAAAAAATGACGCACTCAA
CGCCAGAAACAACACGCGCCCACCCGTGCCCCACTGTGGCACCAGACGCC
CCCCTTCCTTCAGCATCGACCACGACACCGGACGTCGCACCCGTTGCTGC
GCACCAACACCCGCATGCCCTCGCGCCACCCCTTTGAGCGCTTGCTTGAT
CAAAGAATGACATGTATCAACTTCCATCGTATACGACAAACGATGAAATA
AATTAGCAGCAGACAAATGACCAGCTATCGTCGTCTGCCTCAAGCCCAGC
ACCGTGAACGCGTATGCCACGTACTACAACAATTGCGAAACAATATCCGC
GATGGAGACGACGGCATCATAAACGCCGGTCTCCCCACAACGTCCTCTCG
AAACTTCACCCACGCTCCAAAAAATCCCAGGNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCGCCCCCCCCCACCGCGACT
CCCGCCCCCCCCACTGCCACTTCCGGTGCTTGACGAATCTCGGCGCTTCA
CGTGCTCAAACCTGCATTTGTCGCCGAAAGAGCACGTGCCAGAGTCGCGG
AACTGGAAGCACTCCCTTGTGACACGCTTCCGTGACGATGAATCACCGCG
ATCCAGTTGGCCCGCCTCACGCTTGCCGCTCCCGCCCCGCGACTCTCCTG
TTCCGGGGAGGGATCGTCCGTCACTCAGGACCAGCCGGAATAGATTGACC
CCCCGTTCACAGAAGTTATTGATGTTGGGGAACTCGTGCACCGGCGGCAA
GGTGTGTCCGTCGAACGCGTCCGGCGGGTAATGCATTTTCGTGAAGGGGT
ACATCCAGGTGATGATCGCAGTTGTCCACAATTTGACGTCCTCGTTCGGT
AACCTTGGCAGTGCCGCCCGCTGGTACTCGTCCGGAAACACATCACTATT
CCGCACGAGAGTAGTCCGAAACCTGGAGCGTGCGTCCGCCATGGCTGTGG
CTATGGGTTCCAACCGCCGCAGCGATTGCACACCCGCGGTCGTGGACGAA
TCTAGACCAAACTTCAACAGCCGCATCACNACATCACCGCCTCACACATC
ACGTCGAAGTTGTCTGCAATAGACGACGTACGGGCAACCCCCACGGGCCG
GAAGCTTTTGACGTCGAAAGACGAAAAGGCACGCATCTGGGCGAGGACGT
CGCCCGTGACGTGAACGATATCGCCCATCAATCCCTGCAGGTCCTCCTTC
TGTGGCCCGGGCTCCGGCCCCCGCTGCCCCCGAAGTACCCAGAGTGTCTG
ATTATATTTGGCCTGCCAAATGGTGGCCTCCCTCCTCGCCTCCTCTTTGG
CGTTGGACCTCGCGGGCACACTCGCCCCCCCGCCC

protein sequence of EsuBft2333_4a-0001

>EsuBft2333_4 ID=EsuBft2333_4|Name=EsuBft2333_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MVPYVRPIPRFPSPSPLSSQNFWRRSPRCQVRGAPNPKRMQRVLGRRQTC
QRHDLPQRFRRVTTSPHGPSPLPGSELD

mRNA from alignment at Scaffold_242:381684..385428+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2333_4a-0001 ID=EsuBft2333_4a-0001|Name=EsuBft2333_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3745bp|location=Sequence derived from alignment at Scaffold_242:381684..385428+ (Ectocarpus subulatus male Bft15b)
NCTGCAGCAGCCTCCCTCGTGCTTCCTTGGGGCAGACCAACAAGTGCTCC
CAAGTCTACTCTTCTGGTCAGGTTTCAGACACTTCACGCTTACTCCATGC
TGCTGCACACTGATTGGCCAACAGATATTTCAACTTCCGCTCCTCACAAA
ACTCAGATTTCAACGCCTCTGTCTCTGCAATCTTCTGCTTTGTTCGTTGC
TTTCGAAATTGCATTAATTGGTCGTACCCCCCCACGCTTGAACAGGGGGG
GGAGAGAAGAGCGGAACTCGGGGATCTCAACCTATCATCGTCCACAACAC
CATCAGTATAAACCAGTCACCGCACCATCAGGCATACTCTCAAAGTCATG
CCTGCCCCCAATCTAACCGCGGACTGGTTTCCATACTGATCTGTACTCTC
TCTCCCCCCCTACCGTGGTTCCCACTCTTGTACCGACCAATAAACCCTGA
TCGCATTCACTCCCCCCTCCTTTTACGGCTCGCCCTCACCAGCCTCGGGG
ACTACGTCACCCCACTCTGTACCCTGTCCTGGTTGCCTCTCTGAATCACC
CTCCGACGCCAAGGTACTAGAAACCCACTCTGCATCTTTCCCATGGTTCC
TTACGTACGGCCGATACCCCGATTCCCCAGTCCATCTCCCCTCTCGTCTC
AGAACTTCTGGCGACGCTCCCCCCGCTGCCAAGTACGTGGCGCCCCCAAT
CCGAAGAGAATGCAACGCGTACTCGGACGACGGCAGACCTGCCAACGACA
CGACTTGCCGCAGCGCTTCCGTCGCGTGACGACGAGTCCACACGGACCAT
CGCCCCTCCCCGGTTCCGAACTCGACTAACGGAGAAGACGAAGGGAGAAC
AGGGAAGCATGAAAGGAGTTCAATCGTCACATCGACTGCACCCCCCCTCC
ACTCCACAGACTGGGGAGGCCCCGGCCTCGCCCGTGTACACACGGCGCCC
TTCCGAAACTGGTCGCCTTTGGACGACCGAAACCGCACCTCGACTCTGTC
GGCCTCTCCCCTCCGTTCCGGAGGCAACTGGCGAGAACCCAAAAAAAACG
CCACGTCCCCCCGACGCAACCCATGACAAGAATCCATGGCCAACGAGGAC
ACAGCGAACATTTCGCATGCCCGCATCAAGAAAAAAAATGACGCACTCAA
CGCCAGAAACAACACGCGCCCACCCGTGCCCCACTGTGGCACCAGACGCC
CCCCTTCCTTCAGCATCGACCACGACACCGGACGTCGCACCCGTTGCTGC
GCACCAACACCCGCATGCCCTCGCGCCACCCCTTTGAGCGCTTGCTTGAT
CAAAGAATGACATGTATCAACTTCCATCGTATACGACAAACGATGAAATA
AATTAGCAGCAGACAAATGACCAGCTATCGTCGTCTGCCTCAAGCCCAGC
ACCGTGAACGCGTATGCCACGTACTACAACAATTGCGAAACAATATCCGC
GATGGAGACGACGGCATCATAAACGCCGGTCTCCCCACAACGTCCTCTCG
AAACTTCACCCACGCTCCAAAAAATCCCAGGNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCGCCCCCCCCCACCGCGACT
CCCGCCCCCCCCACTGCCACTTCCGGTGCTTGACGAATCTCGGCGCTTCA
CGTGCTCAAACCTGCATTTGTCGCCGAAAGAGCACGTGCCAGAGTCGCGG
AACTGGAAGCACTCCCTTGTGACACGCTTCCGTGACGATGAATCACCGCG
ATCCAGTTGGCCCGCCTCACGCTTGCCGCTCCCGCCCCGCGACTCTCCTG
TTCCGGGGAGGGATCGTCCGTCACTCAGGACCAGCCGGAATAGATTGACC
CCCCGTTCACAGAAGTTATTGATGTTGGGGAACTCGTGCACCGGCGGCAA
GGTGTGTCCGTCGAACGCGTCCGGCGGGTAATGCATTTTCGTGAAGGGGT
ACATCCAGGTGATGATCGCAGTTGTCCACAATTTGACGTCCTCGTTCGGT
AACCTTGGCAGTGCCGCCCGCTGGTACTCGTCCGGAAACACATCACTATT
CCGCACGAGAGTAGTCCGAAACCTGGAGCGTGCGTCCGCCATGGCTGTGG
CTATGGGTTCCAACCGCCGCAGCGATTGCACACCCGCGGTCGTGGACGAA
TCTAGACCAAACTTCAACAGCCGCATCACNAGTCCGAAACCTGGAGCGCG
CGTCCGCCATGGCTGTGGCCATGGGTTCCAACCGCCGCAGCGATTGCACA
CCCGCGGTCGTGGACGAATCTAGACCAAACATCAACAGCAGCATCACCGC
CTCACACATCACGTCGAAGTTGTCTGCAATAGACGACGTACGGGCAACCC
CCACGGGCCGGAAGCTTTTGACGTCGAAAGACGAAAAGGCACGCATCTGG
GCGAGGACGTCGCCCGTGACGTGAACGATATCGCCCATCAATCCCTGCAG
GTCCTCCTTCTGTGGCCCGGGCTCCGGCCCCCGCTGCCCCCGAAGTACCC
AGAGTGTCTGATTATATTTGGCCTGCCAAATGGTGGCCTCCCTCCTCGCC
TCCTCTTTGGCGTTGGACCTCGCGGGCACACTCGCCCCCCCGCCC

Coding sequence (CDS) from alignment at Scaffold_242:381684..385428+

>EsuBft2333_4a-0001 ID=EsuBft2333_4a-0001|Name=EsuBft2333_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_242:381684..385428+ (Ectocarpus subulatus male Bft15b)
ATGGTTCCTTACGTACGGCCGATACCCCGATTCCCCAGTCCATCTCCCCT
CTCGTCTCAGAACTTCTGGCGACGCTCCCCCCGCTGCCAAGTACGTGGCG
CCCCCAATCCGAAGAGAATGCAACGCGTACTCGGACGACGGCAGACCTGC
CAACGACACGACTTGCCGCAGCGCTTCCGTCGCGTGACGACGAGTCCACA
CGGACCATCGCCCCTCCCCGGTTCCGAACTCGACTAA