EsuBft2333_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2333_3a-0001
Unique NameEsuBft2333_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:378963..380595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FLG1
ProteomeIdEsuBft2333_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length84
Hectar predicted targeting categoryother localisation
Evalue5.85e-39
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_3aEsuBft2333_3aEctocarpus subulatus male Bft15bgeneScaffold_242 378963..380595 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_3a-0001-exonEsuBft2333_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 378963..379510 -
EsuBft2333_3a-0001-exonagat-exon-477Ectocarpus subulatus male Bft15bexonScaffold_242 380302..380595 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_3a-0001-exonagat-three_prime_utr-9361Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 378963..379510 -
EsuBft2333_3a-0001-exonagat-three_prime_utr-9362Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 380302..380322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_3a-0001-cdsEsuBft2333_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 380323..380595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2333_3a-0001EsuBft2333_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 380323..380595 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2333_3a-0001 ID=EsuBft2333_3a-0001|Name=EsuBft2333_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=842bp|location=Sequence derived from alignment at Scaffold_242:378963..380595- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCATATTGGGGTTTATTGACCCCTGAGGAAGCTGGCTTCAATTC
CGCCATGAGCAGTGTTAGGGTTACGGTGGAATGGGGGTTCAGTCGAGTCG
TCGCCCAGTGGCCCTACGTAGACTACCACAAGAAGCAGCAGGTCGGTCTA
AGCGCGTGTGGCCTCGGCAAACAGTATTATGTCGCCGGCATTCTCACCAA
TTGCCATTGCTGCTTCTACCCAAATTCGACGGCACAGTACTTTGACCTCC
AACCCCCGTCCCTCGAGGAATAATACCTTCAGGCAGAGGGCCAGGCGAGA
CTGTAGTTGTTTTATTGTTCCGAACCCCGAAAATTCCGGTACTCGGGCCT
TTACTCCGGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTGTTTTTTA
TTTTTGTTTTGTTGTTGAGATGAGACACAAGCGCGCCTTCGCCCCTTGTG
CTCACTCTCATCTAGCACCCATCAAAGCCTGACCAGGGAGTCAGTTGATA
AGAAAATCTCTCTACACTTCTCTTTCCAGAGCTCGCTCGGGCCTACCGAT
TTCACAGCAGTGTAGACCAACCTCTGTTTGTGATAGAGCGGTGACAGCAG
TGTAACCTCTGTGGTAGACTACAAAGTCTACGAGCTACAGCAGCACCGCC
ACCTCCGCTGCTGCAAGACGCCACATTCTGTGAGGTTATGAGCCTCGCTT
TACGCGAACACTAGGAGCTGCGGACGTCACGACGGAGGTCAAGACATCCT
ACTACTGCTGTGGACTACAACATCCGTCTGTGGACTTCGAGCGGAAATCT
GGATTCGGAGATTTGGGAGATCATCAACGGTCAGCGGAAACG
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protein sequence of EsuBft2333_3a-0001

>EsuBft2333_3 ID=EsuBft2333_3|Name=EsuBft2333_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MSPYWGLLTPEEAGFNSAMSSVRVTVEWGFSRVVAQWPYVDYHKKQQVGL
SACGLGKQYYVAGILTNCHCCFYPNSTAQYFDLQPPSLEE
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mRNA from alignment at Scaffold_242:378963..380595-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2333_3a-0001 ID=EsuBft2333_3a-0001|Name=EsuBft2333_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1633bp|location=Sequence derived from alignment at Scaffold_242:378963..380595- (Ectocarpus subulatus male Bft15b)
ATGTCGCCATATTGGGGTTTATTGACCCCTGAGGAAGCTGGCTTCAATTC
CGCCATGAGCAGTGTTAGGGTTACGGTGGAATGGGGGTTCAGTCGAGTCG
TCGCCCAGTGGCCCTACGTAGACTACCACAAGAAGCAGCAGGTCGGTCTA
AGCGCGTGTGGCCTCGGCAAACAGTATTATGTCGCCGGCATTCTCACCAA
TTGCCATTGCTGCTTCTACCCAAATTCGACGGCACAGTACTTTGACCTCC
AACCCCCGTCCCTCGAGGAATAATACCTTCAGGCAGAGGGCCAGGTAAGA
CGTACTCGAAATAGGAATCGACGTTGGGAAGGGATAGTCACACGCTCGCG
CAACTTGGTATGACGTAGGGGTGCCGTGTTGAGGTTAGATAACGACATAT
ATGAGGTGCTCCGAGGAACTGTCGGCGCCAGGAGTAGGAGATCAACGCAA
GGGAGGGAGATGGGTTGGGTGTGCGGCATGAAAAGAGGCAGCATGCTTCG
TACTTAACCCTTATGTGACTACACCCACGAATGAGCTCCGTTCCCAGCTC
CGATGACTCTTTAATGCGACATATATCAAACCGAATTGAGCCCGAATCGA
GCTGTGGCTACCTGCGTCGACGAGGGCTGGACTGGACGAGTAGACCGTCG
AAACGGGACTAAATAACGACGGGGACAGCAGCAGTAGCATCCCCTACACA
AAAAAAAAAACAGGGTAGTCCTCGATACCAGTTTTTCTGACGGACACAAA
ACGGGACGGTTTGCAAAATGACGGTACTTTTTTGGCGGTTGACGGTACTT
CGTTTTTTTAACGGTACCACTTTTGGCGGTTCACGGCACCGCCGAATGTG
CCGGTACTTTTTTGGCGGTGGACGGTACTTCGTTTTTTTTACGGTACCTG
TTCGGCGGTACTGCAACATCACGGTAATAATGACGCTGTCGAGGAAAACT
GTTACAACATAGTCAGGCACAGTTTACCATAGGTGCGACTGCGGCAACTA
GCCTTCCGTAGACATAATACAGAAAGAAGAGATGGTACTCAGCAGAGAAC
ATGAGCACAGAGTTGTAGCGGAGATAATTTGGCAGGCGAGACTGTAGTTG
TTTTATTGTTCCGAACCCCGAAAATTCCGGTACTCGGGCCTTTACTCCGG
AGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTGTTTTTTATTTTTGTTT
TGTTGTTGAGATGAGACACAAGCGCGCCTTCGCCCCTTGTGCTCACTCTC
ATCTAGCACCCATCAAAGCCTGACCAGGGAGTCAGTTGATAAGAAAATCT
CTCTACACTTCTCTTTCCAGAGCTCGCTCGGGCCTACCGATTTCACAGCA
GTGTAGACCAACCTCTGTTTGTGATAGAGCGGTGACAGCAGTGTAACCTC
TGTGGTAGACTACAAAGTCTACGAGCTACAGCAGCACCGCCACCTCCGCT
GCTGCAAGACGCCACATTCTGTGAGGTTATGAGCCTCGCTTTACGCGAAC
ACTAGGAGCTGCGGACGTCACGACGGAGGTCAAGACATCCTACTACTGCT
GTGGACTACAACATCCGTCTGTGGACTTCGAGCGGAAATCTGGATTCGGA
GATTTGGGAGATCATCAACGGTCAGCGGAAACG
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Coding sequence (CDS) from alignment at Scaffold_242:378963..380595-

>EsuBft2333_3a-0001 ID=EsuBft2333_3a-0001|Name=EsuBft2333_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=273bp|location=Sequence derived from alignment at Scaffold_242:378963..380595- (Ectocarpus subulatus male Bft15b)
ATGTCGCCATATTGGGGTTTATTGACCCCTGAGGAAGCTGGCTTCAATTC
CGCCATGAGCAGTGTTAGGGTTACGGTGGAATGGGGGTTCAGTCGAGTCG
TCGCCCAGTGGCCCTACGTAGACTACCACAAGAAGCAGCAGGTCGGTCTA
AGCGCGTGTGGCCTCGGCAAACAGTATTATGTCGCCGGCATTCTCACCAA
TTGCCATTGCTGCTTCTACCCAAATTCGACGGCACAGTACTTTGACCTCC
AACCCCCGTCCCTCGAGGAATAA
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