Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FPW3 |
| ProteomeId | EsuBft2319_2 |
| Protein domains | SSF51735 |
| Protein domains | PTHR22981 |
| Protein domains | IPR029154 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | IPR013328 |
| Protein domains | IPR002204 |
| Protein domains | IPR016040 |
| Protein domains | IPR006115 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | IPR015815 |
| Protein domains | IPR008927 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | glyoxylate succinic semialdehyde reductase 1 os:arabidopsis thaliana gn:glyr1 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 8 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1575 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.52e-204 |
| EggNOG OGs | COG2084@1|root,KOG0409@2759|Eukaryota |
| Ec32 ortholog description | 6-phosphogluconate dehydrogenase, NADP-binding |
| Ec32 ortholog | Ec-01_008450.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | 3hydroxyisobutyrate dehydrogenase |
| COG category | I |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0051287 |
| GO | 1901576 |
| GO | 0004571 |
| GO | 0030267 |
| GO | 0006979 |
| GO | 0005730 |
| GO | 0004616 |
| GO | 0006573 |
| GO | 0008442 |
| GO | 0003858 |
| GO | 0005829 |
| GO | 0006098 |
| EC | 1.1.1.79 |
| EC | 1.1.1.30 |
| GO | 0044711 |
| GO | 0044249 |
| GO | 0009570 |
| GO | 0035064 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2319_2a-0001 ID=EsuBft2319_2a-0001|Name=EsuBft2319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1575bp|location=Sequence derived from alignment at Scaffold_358:364106..370421+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCACATACGCAGCATAGCAGCGTCGACATAACTGGCTATTCGTGATTCTG
TCTCACGTGGAAAGGATAGAAACCATGGCGGAAACTGTTGGATTCATCGG
ACTGGGCATCATGGGCCAGGGAATGGCTTCCAACCTGGCGAAAGCCGGCG
CGAAGGTGGTGGTGTGGAACCGTAGCGAGGGCAAGCGGTCGGCGTTCGTC
GCCGAGCACGAGGGATGTTCCGCCGCAGCCACCCCGAAGGAGGTCGTGGA
ATCGTGCGAGCTAACCTACCTCATGCTCTCTGACCTCGAGGCTTCTAAGT
CCGTGTACGAGGGCGAGGACGGGGTGTTGGCCGGAGTGTCGAAAGGAAAG
TGCCTCGTCGACTGTGCCACCCTCACGCCAGAACACATGACGAGCCTCTC
GGAGCGTGTCCAGGCGAAGGGCGGCGTTTTCCTCGAGGCTCCCGTGTCGG
GCAGCAAGGGCCAGGCCGCTGGGGGTACCTTGATTTTCCTCTGCGGTGGA
GATGAGGCTCTGTTCGACCGGGTGAAGGGATCGATGGAGGGGGACGGGGT
CACGATGGGGAAGGCAGCGCACTACCTCGGGGCTGTCGGTACGGGCTCCA
AGATGAAGCTGGTCGTGAACATGACCATGGGCACCATGATGAACAGCTTG
ACGGAGGGAATCGCGCTTGCCCAGGCGGCGGACCTTCCGGCAGACAAGCT
TCTGACGGTGCTGGACCAAGGGGCGATGTCCAACCCAATGTTCAGAATGA
AGGGCCAGTTCATCCTCGATGGAAAGTTCGACCCGGCCTTCCCGCTCAAG
CACGCACAAAAGGACATGCGCTTCGCCGTGGCTTTGGGAGACTGCTTGGG
ACTGCCTCTTCCGGTGGCGTCGGCTGCCAACGAGCAGTTCAAGCGCGCGC
GGCCGGAGCACGGCGACGAGGACTTCTGCGCCGTTTTCGCCGCGTCCAAG
AAATGAACTCTACGATATAGACTATTCATTTTCACTTGACAAGGGAACAT
GATAAGAGAGTGTTCTCCGTCGGTCCTTCCTTCTAGTTGGGTGGTTTGTA
GTGGCATGGTGATTCTCTGGGCTTGTTCTTCTCGTTATTGTTGTTGAGGT
TTGGTGTTCGGCGTGCTGTTCCTCGTAAATGTTGCATGTTCGTGGGGTAC
TGCATGAAATTGCTAGAATCTTTCTGTTGTTGGGGGTAAACCGAGGGCCT
ACAACCAGTAGTGCTGATTGGAATATTTGCCAGTCCATGCGCCGCGGTGG
GCAAGGAGGTGCCTTTCATTTTTCTTGTTTCCCTACTGCTGTAGTACGGT
TTGCGAAGAAGTCGGATGAGAATTGAGGTTCGTTTTGATGTTTATCATGT
TCAGCAGGAAGTTGAGCGGGCCCTCGTCGGTCTGGGTGCCTTCTTGAGTC
GTCAACAACATCACGTATCAGCGGTCAAAACGGAATATAGAGAATGCCGA
GTCCGTGTGGCGGGCACCGACCAAAAGGCGCATCTATGGCTTGTTGGATG
TGAAGCCATTCGATAATTCGTCGGAAAAAATGGCGTGTCGGCGTAGCCTC
AAATCCTCACCGGCACATGGTGGGT back to topprotein sequence of EsuBft2319_2a-0001 >EsuBft2319_2 ID=EsuBft2319_2|Name=EsuBft2319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=293bp
MAETVGFIGLGIMGQGMASNLAKAGAKVVVWNRSEGKRSAFVAEHEGCSA
AATPKEVVESCELTYLMLSDLEASKSVYEGEDGVLAGVSKGKCLVDCATL
TPEHMTSLSERVQAKGGVFLEAPVSGSKGQAAGGTLIFLCGGDEALFDRV
KGSMEGDGVTMGKAAHYLGAVGTGSKMKLVVNMTMGTMMNSLTEGIALAQ
AADLPADKLLTVLDQGAMSNPMFRMKGQFILDGKFDPAFPLKHAQKDMRF
AVALGDCLGLPLPVASAANEQFKRARPEHGDEDFCAVFAASKK back to topmRNA from alignment at Scaffold_358:364106..370421+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2319_2a-0001 ID=EsuBft2319_2a-0001|Name=EsuBft2319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6316bp|location=Sequence derived from alignment at Scaffold_358:364106..370421+ (Ectocarpus subulatus male Bft15b)
GCACATACGCAGCATAGCAGCGTCGACATAACTGGCTATTCGTGATTCTG
TCTCACGTGGAAAGGATAGAAACCATGGCGGAAACTGTTGGATTCATCGG
ACTGGGTGAGTACGTTTGGCAGTTTCTAGGAGAGGCGGCGCGATCTTGTG
CTCGCATTTCCTCTTGGTATTCTAGTGTCGGCACACGCGAACATGTTGGA
GAGCATGACGCGGCACCCTTGCTGCAGCAGCTGCTGAGAGAGCCGCGCGC
AACTCGCCCGCGAATGCAACGTCATCACACCACCGCCAAACTTGTCGCGT
GAGTCCGACACTTGGCTCAGGACTGGGTTTGCAATGTTCTTCTGCTGCGC
ACGCCTCCATACAGCGCTCTCGTACTTTCCGGTTGACTGCTGTTGTCACA
CTCCGCACTAAATCCCACCCTGTCCTCTCGCCATGTTGCGCACCTCCTTG
TACGCGCGTATCGCGTCACTGCGTCCGCAGGCATCATGGGCCAGGGAATG
GCTTCCAACCTGGCGAAAGCCGGCGCGAAGGTGGTGGTGTGGAACCGTAG
CGAGGGCAAGCGGTCGGCGTTCGTCGCCGAGCACGAGGGATGTTCCGCCG
CAGCCACCCCGAAGGAGGTCGTGGAATCGTGCGAGCTAACCTACCTCATG
CTCTCTGACCTCGAGGCTTCTAAGTGAGAAAAACACAATAATCACAGGCG
CGCATGTAATAGGGAGGGAGTGTAGATAGCAGCGTTGTGCGACTGCTGCA
GTGTTAAGTAGTAATCCTTTGTTGTTCTTCGACACGGGCAGTGTACTTTG
CAGGGAACGTCGGGTTCAACAAAAAAAATCGCGGGCCGTTTACTCTCTGG
TTTACCCCGCATCAAAATGAGCGTCGACGCGTCGACACCTTGATCACGAT
GTGGTGGATGTTCGACCACGGTATTCTGTTATTTGTTTGTATCCTTCATT
GATATGCAACCCACTTTGTAACTTGTAATAGCACAGAGGAATGCCGTCGT
GGAAGGTCAATGTCCAAACACCGTGAGTGATCGAGCTTGGCATGTTTAAC
ATAAACAGCGATGGAACATGGACCTGGCATGTTACACCACGGCCGGTTGT
AACGTTTGCATGTGTGGCTGCTGCTGCTGTTGGTGTCTTTGTGCACTGAA
AACCGTTTTGACCTCATCCATTTACCTCTTCATCTTGCGTTCTCTTCAAG
TCAAACGGAACGAAGTTCATAGTCCATTACAAAGCACATGGCAATCGTCG
AAACTCAGAAAAGCCCCGACACTCCAGAAGTAGCTGCCCCAATAAGCTGA
AATCTCACAATACAAAAAACCACAGCCTAGAGCAGGTGGAAAGTAGAGCC
TATTGCCCCATCCCTCGGGAGCTGAATTGCAGAGTTGAAGGAGCTGTCCT
CGCTCCCCCAGAATTCGGCGCCGGCGAGTGGAGTGTTCGTACTCGTGTTC
GCCTTTTGGTTTCTTTGGCCAGGCCAACCCCGCCCCACATCCTGCAGATG
AGAAAAGCACCTATGTAGAGTGCTTCTACTGATGCTGTTGCGACCTCCTA
CCACTACGACTGCCTCTCTCCCTCGTTCCTATATGGTTTTTGCTTGTCCT
TGCGTAATCGGCCGTGGCCACTACAACCACCGACGGCTGGGCGTACTCCT
CTTCTTGTGTTTGCTGTCATTTCGACCGCTCGAGACCAGGTCCGTGTACG
AGGGCGAGGACGGGGTGTTGGCCGGAGTGTCGAAAGGAAAGTGCCTCGTC
GACTGTGCCACCCTCACGCCAGAACACATGGTGAGCCGTGATGACTTAGC
CAGGCGGTTCTGATACCACTTGTTTGGAGGGCATGTATGGAACCACGCAG
CACACACAGAGGAAGGCGAGGGCCACGTGCTCAAGCTTGAGAAGATTCGA
AGAGCTCGCTCCATGGTATGCCGGCGTCATAACCGAACCCCTTTTCCTTT
CCCCCATGGTAGAAAAACGCACAGTTTCAATCATGGGGATACATGACCGG
TCGTGCTTCGTCTTGATTCCACTGCACCTCAGCTGTTTTGGTGACTACTG
CTGGCCCGAAATCGAAGCTTCGGTCACCAGCCTTCGTTGGCCGATCTGTG
ACTGGGTGTAACTGTTGTGGAAACGTGCAGCAAGCCCTAGAGACTCTGGT
CGAAGCCCTGGAAATCTCTCGAAATCTTGGCAAGTGACTATTTACGTCCT
GCCCAAAAACTCACCATTTTCCAGAGGGGAAAAACGTTGCTTGAGTTATT
TTCTGTGTGGCTCTGCCTCACAATTTTTGCGTGTTGTTTGGTGCAAGTTG
CCTGGGTTAGGTTGCTGGAGTTCGGGAAACATTCGGACCACAGCCCTTTT
TCGATGACGGCCAAGCTTCCACCTCATAATATATCCGTATTCCTATGTCC
TCTCCGAATAATATTTTTTGTTTTTGTTACAGTTTCGATCATTTCCCTCT
GGCATTTGCCTGTAGCTCCGTGCTGCCTCCTGTTGTGTACTCTGTCCTTG
TGTGTTTTCGATGACGTCTCTCTTCTTCACGATCCCCCTTCTGCTAAATA
TTTTTTCGTCTCCTCGTTCAAAATGTCTACTGGTACTTGTATCAGACGAG
CCTCTCGGAGCGTGTCCAGGCGAAGGGCGGCGTTTTCCTCGAGGCTCCCG
TGTCGGGCAGCAAGGGCCAGGCCGCTGGGGTGAGCGGTGTTCAAATTTCA
TGCTGTCATCTTCACGTTTGTAGCCCGTTCTTACCTCTCTCCCGCCCCTT
CTCTTCGACGTGTACATGGCAAAGAAGCGAGTGTGGTGTCTTTCTTTTGT
GCCTGGCAGCCTCCAGGCGTTGAAGTCTCACGGTTGCCGCCGTTTTCACA
CCGGAAACTCCATCCCATCCCATCCCATCCCTTCCAGTTCCGTCCCTTCA
GGTACCGTACCCTTTTTCCTTGTCTTTACCCCGCTCCCCGCCAAATTTTG
ACGAAACCAAAACCAACATCACGCGCACAGGGTACCTTGATTTTCCTCTG
CGGTGGAGATGAGGCTCTGTTCGACCGGGTGAAGGGATCGATGGAGGGGG
ACGGGGTCACGATGGGGAAGGCAGCGCACTACCTCGGGGCTGTCGGTACG
GGCTCCAAGATGAAGCTGGTCGTGAACATGACCATGGGCACCATGATGAA
CAGCTTGGTGAGTCGAGAGTGCGTGGCCATGAAGGTTGTCAGTGTGGAGG
GTAGGGGTGCGAGCGTGTTTTTGCGTTCTCTCTGTACTTTTGGTGTGTTT
CTTCTAGGTTTGTCAACGAGGATGAAATTTCATGGCGCGGAGGAGGCGTG
GCTCGTAGAATCTCCATGTTCGCTCTCTAGGAATTGGGAGGACGGAAGCC
CGCGCATGAGATCGCCGCGTCGACACGGTTACCAGGATGAAATCTTGCGC
CAGGCTGATATTCTGGAGTGTTGGCACCAATCCTTTACACACACCCCACC
CCCCTGCCCCCTGCCCCCCGCTCGCTGGTATTTCCCCCACACTGTTCTTG
ACTAAGAGGAATCCCCCAGACGTTGGCCGTCTTTGGCGCAGGAGTGGGAA
TGACTTCCCGCATCGAGGGCTAGTGTCTGGTTAGCTGTATGGTGACACGC
AAGACGAGCAACAAGTTAGTACTCCTCCACCTCCCCCGTCCTTTGAAGGA
CGCGTGGCTAATGGTGAAACTGCTCAGGCATGCAAAAAATGAGTACGCCC
CCCCTCCCCTCTTCTCCTACTTGTCTTGTCTCCTTTCGCGGTCGTCTTTC
GTGTCAGACGGAGGGAATCGCGCTTGCCCAGGCGGCGGACCTTCCGGCAG
ACAAGCTTCTGACGGTGCTGGACCAAGGGGCGATGTCCAACCCAATGTTC
AGAATGAAGGTACCGACGAATATTGTACGGCGGTCATATATGTATATGGC
GGATGAAGTTGACTGACGCAGAGCTAACAACAAGGCATAGCGCGGTTATT
TTCAGCTGCCCCACCAATGCCTCCTTTGCCGACCCAAACTGTACTCGATT
CTGTGGTGGTTGGTGCGATGTAACAAATGAGTCGTGTGTAAATTATACCT
TTTTACCAGGTACATGTATGTTTGGTCGACAAATTTTCGCACGTTTGTCC
TCAGTTTTTATATTTTGCCGAAAACGTCGGGAGCTCGACTTCCTCAAGTA
CTACGTTCTGCATACCCGCTGTTGGTTGAATGTGACTAGAGACAAGAGGG
CGTGTTGGCTGCAGTTCCCCCCATGGTGCAAGAGGGATGTACCATCGCTC
CGTCAGATTGGTCGACATGCGGCACTTCGAAACACGTAGACGTCCACCGC
GAGAAATGCACCTCTGGTGCACAAAACCCTGGCACCGCTTCGTCATTGGT
TGTATTTTTAGACGTTCCCTAACATCGTGTAAGCTTTTCGCGTCTCATCG
GTTGTTGGTGTTACGCTTTTGTCCTCCCCCGCCCTGAAGGGTCGGCTCAG
AAGGCGATCTACCCCCGTCCGTCCCTACGGCTGAACTCTTTGTGTCATTT
GCTTATGTTATTTATTTGTCGACCATCGTCAAGATGGACGTAGTCGCCCC
TCTCCTTTGTCGTGCTTCGTTACGTTTTTTGTTTATTCGGCCATCGCCGT
GCTTTCGTGTCGTTGCCCCTTCTCTCTTCTCCCCTCTCCTCCTTCTTCCT
CCTCCCTCAGGGCCAGTTCATCCTCGATGGAAAGTTCGACCCGGCCTTCC
CGCTCAAGCACGCACAAAAGGACATGCGCTTCGCCGTGGTGAGCAATATC
AGCAGCGTCGGTGTTGTAGTAGTGAAATGCATCCTCCTCGACCTACGCCG
AGGAGTAAAATTTTGAAGGGCTGAAGGTACCGCATTCCCACAAGGCTTCG
CGCGTGGCAAGTGGGTCGGGGAATGAGTTGAGGTCAAGACACATGATGCC
AATCAACGCGCATTGTTTGTCTGGTTTCTTTTGCATGGTTCGTATGCGGC
AACTGCGTCAGAGCTTCTAGCTTTTGTGGTTGCCGGGACCGATTTCGGAA
ATGTAACGACGAAAACGAATCAGAATCAAAGAAAGCCGAGCGGGATGGGA
CGGGACCGTTAACGAATGGGTAACCTCTATTTTGGTGGAATGATAACCCG
AGGGCTTCAATGTCAAACCCTCAAGCACCCGGTCAATCCTCTACAACAGG
GGATGCCTCTTGTCAGGCACACCTCTGAAATTGCACAAGTCTCAGGTTTA
TCTTAGTTGTTACTGTGGAGGTCAGGATATGGAGTATCCAGGACGAGCAG
GCACGTACATAACGCGTAGGTATGGATCTGTGAAATGTACGACAGTAGAT
CACTGTGCTTGCAAGGATCTTCACTGTACTGATTCCTAAAACTCCGGACT
CTCCGCTCAACCAGAGTTGAGGGCTCCACACTGCTGTTGTTTCCTTTCAT
GTTTGTGTCGGCTGTCCTACTATTTGTGGCCCCGGTCCAGCCGGTTACCC
TACCCCACAATTACATCAAACGAACCCCCCGCCGGCGAAGGCGTTGTCAG
CACAACGCCATTTCACTCTCATGGTGCGGTTCCTTTGTTTCCTTCTCTTT
TTGTTGTTGTCGCCTTCTCAGGCTTTGGGAGACTGCTTGGGACTGCCTCT
TCCGGTGGCGTCGGCTGCCAACGAGCAGTTCAAGCGCGCGCGGCCGGAGC
ACGGCGACGAGGACTTCTGCGCCGTTTTCGCCGCGTCCAAGAAATGAACT
CTACGATATAGACTATTCATTTTCACTTGACAAGGGAACATGATAAGAGA
GTGTTCTCCGTCGGTCCTTCCTTCTAGTTGGGTGGTTTGTAGTGGCATGG
TGATTCTCTGGGCTTGTTCTTCTCGTTATTGTTGTTGAGGTTTGGTGTTC
GGCGTGCTGTTCCTCGTAAATGTTGCATGTTCGTGGGGTACTGCATGAAA
TTGCTAGAATCTTTCTGTTGTTGGGGGTAAACCGAGGGCCTACAACCAGT
AGTGCTGATTGGAATATTTGCCAGTCCATGCGCCGCGGTGGGCAAGGAGG
TGCCTTTCATTTTTCTTGTTTCCCTACTGCTGTAGTACGGTTTGCGAAGA
AGTCGGATGAGAATTGAGGTTCGTTTTGATGTTTATCATGTTCAGCAGGA
AGTTGAGCGGGCCCTCGTCGGTCTGGGTGCCTTCTTGAGTCGTCAACAAC
ATCACGTATCAGCGGTCAAAACGGAATATAGAGAATGCCGAGTCCGTGTG
GCGGGCACCGACCAAAAGGCGCATCTATGGCTTGTTGGATGTGAAGCCAT
TCGATAATTCGTCGGAAAAAATGGCGTGTCGGCGTAGCCTCAAATCCTCA
CCGGCACATGGTGGGT back to topCoding sequence (CDS) from alignment at Scaffold_358:364106..370421+ >EsuBft2319_2a-0001 ID=EsuBft2319_2a-0001|Name=EsuBft2319_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=882bp|location=Sequence derived from alignment at Scaffold_358:364106..370421+ (Ectocarpus subulatus male Bft15b)
ATGGCGGAAACTGTTGGATTCATCGGACTGGGCATCATGGGCCAGGGAAT
GGCTTCCAACCTGGCGAAAGCCGGCGCGAAGGTGGTGGTGTGGAACCGTA
GCGAGGGCAAGCGGTCGGCGTTCGTCGCCGAGCACGAGGGATGTTCCGCC
GCAGCCACCCCGAAGGAGGTCGTGGAATCGTGCGAGCTAACCTACCTCAT
GCTCTCTGACCTCGAGGCTTCTAAGTCCGTGTACGAGGGCGAGGACGGGG
TGTTGGCCGGAGTGTCGAAAGGAAAGTGCCTCGTCGACTGTGCCACCCTC
ACGCCAGAACACATGACGAGCCTCTCGGAGCGTGTCCAGGCGAAGGGCGG
CGTTTTCCTCGAGGCTCCCGTGTCGGGCAGCAAGGGCCAGGCCGCTGGGG
GTACCTTGATTTTCCTCTGCGGTGGAGATGAGGCTCTGTTCGACCGGGTG
AAGGGATCGATGGAGGGGGACGGGGTCACGATGGGGAAGGCAGCGCACTA
CCTCGGGGCTGTCGGTACGGGCTCCAAGATGAAGCTGGTCGTGAACATGA
CCATGGGCACCATGATGAACAGCTTGACGGAGGGAATCGCGCTTGCCCAG
GCGGCGGACCTTCCGGCAGACAAGCTTCTGACGGTGCTGGACCAAGGGGC
GATGTCCAACCCAATGTTCAGAATGAAGGGCCAGTTCATCCTCGATGGAA
AGTTCGACCCGGCCTTCCCGCTCAAGCACGCACAAAAGGACATGCGCTTC
GCCGTGGCTTTGGGAGACTGCTTGGGACTGCCTCTTCCGGTGGCGTCGGC
TGCCAACGAGCAGTTCAAGCGCGCGCGGCCGGAGCACGGCGACGAGGACT
TCTGCGCCGTTTTCGCCGCGTCCAAGAAATGA back to top
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