EsuBft2316_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2316_7a-0001
Unique NameEsuBft2316_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:51863..52160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2316_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length29
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_7aEsuBft2316_7aEctocarpus subulatus male Bft15bgeneScaffold_562 51863..52160 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_7a-0001-exonEsuBft2316_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 51863..52160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_7a-0001-cdsEsuBft2316_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 51863..52051 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_7a-0001-exonagat-three_prime_utr-9274Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_562 52052..52160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_7a-0001EsuBft2316_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 51863..52051 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2316_7a-0001 ID=EsuBft2316_7a-0001|Name=EsuBft2316_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=298bp|location=Sequence derived from alignment at Scaffold_562:51863..52160+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTCGACTTGCCGTGGGAAGCTNTGGGCTGCATTCTCCTCGTCGA
TAGCTCGTCGACGGCGCTTCTCCCAGCGTTGCGCTGCGGGGTCTGTGGGA
TCCTGGCGCTTCCCGCGCTCAGCCATGGTGGTCGACTTGCCGTGGGAAGC
TTTTTGGGGTGTTGTGGGTGCTGTCTAGGTGTGGTGTGATGAAGGCAGCA
CGCGTGACCGGTGTCTGCTTCGGCTGCCCGGAAAAAGCGGGGCGTTTTTC
CCCGGAACCGTGAAAGGACCAAGCCCCAAAAAATCCCGGCTTCCTCTT
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protein sequence of EsuBft2316_7a-0001

>EsuBft2316_7 ID=EsuBft2316_7|Name=EsuBft2316_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=62bp
MLVDLPWEAXGCILLVDSSSTALLPALRCGVCGILALPALSHGGRLAVGS
FLGCCGCCLGVV
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mRNA from alignment at Scaffold_562:51863..52160+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2316_7a-0001 ID=EsuBft2316_7a-0001|Name=EsuBft2316_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=298bp|location=Sequence derived from alignment at Scaffold_562:51863..52160+ (Ectocarpus subulatus male Bft15b)
ATGTTGGTCGACTTGCCGTGGGAAGCTNTGGGCTGCATTCTCCTCGTCGA
TAGCTCGTCGACGGCGCTTCTCCCAGCGTTGCGCTGCGGGGTCTGTGGGA
TCCTGGCGCTTCCCGCGCTCAGCCATGGTGGTCGACTTGCCGTGGGAAGC
TTTTTGGGGTGTTGTGGGTGCTGTCTAGGTGTGGTGTGATGAAGGCAGCA
CGCGTGACCGGTGTCTGCTTCGGCTGCCCGGAAAAAGCGGGGCGTTTTTC
CCCGGAACCGTGAAAGGACCAAGCCCCAAAAAATCCCGGCTTCCTCTT
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Coding sequence (CDS) from alignment at Scaffold_562:51863..52160+

>EsuBft2316_7a-0001 ID=EsuBft2316_7a-0001|Name=EsuBft2316_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=189bp|location=Sequence derived from alignment at Scaffold_562:51863..52160+ (Ectocarpus subulatus male Bft15b)
ATGTTGGTCGACTTGCCGTGGGAAGCTNTGGGCTGCATTCTCCTCGTCGA
TAGCTCGTCGACGGCGCTTCTCCCAGCGTTGCGCTGCGGGGTCTGTGGGA
TCCTGGCGCTTCCCGCGCTCAGCCATGGTGGTCGACTTGCCGTGGGAAGC
TTTTTGGGGTGTTGTGGGTGCTGTCTAGGTGTGGTGTGA
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