EsuBft2316_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2316_6a-0001
Unique NameEsuBft2316_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:58154..58701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2316_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_6aEsuBft2316_6aEctocarpus subulatus male Bft15bgeneScaffold_562 58154..58701 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_6a-0001-exonEsuBft2316_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 58154..58701 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_6a-0001-exonagat-five_prime_utr-5970Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_562 58154..58198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_6a-0001-cdsEsuBft2316_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 58199..58375 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_6a-0001-exonagat-three_prime_utr-9273Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_562 58376..58701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_6a-0001EsuBft2316_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 58199..58375 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2316_6a-0001 ID=EsuBft2316_6a-0001|Name=EsuBft2316_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=548bp|location=Sequence derived from alignment at Scaffold_562:58154..58701+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAGCGGCTCGTCACTGTTTGACGCCAGCCGCAGCGGCCGAATGGATGCC
GTCTAAGTTGAGCCTAGACGCCATCGATGATGCTAGCAAGAGCGGGAGGA
GAAGGACGATGCTGTCAAAATCGTCCTTCAGGGATGCCAGCAACAACAGC
GTAGTGTGCCCTCAAGGTCAACCTAGCGTTGTGGGGACTGCTAGCCTTGA
CCTTCCCGCCCCCACGTCATAGGGAGTACGCGTAGCCGTCCCCACTCTCC
CGACGCAGTGACCGGCGCCGGCACCGAAGTGGGAGATGGCGCTATTCCCC
GGCACGAGCAGAGGGCGGACAAAGCCAAGGAAGCTCAAGCCTCTGCAGTT
GCGGCGGACAACGGCATCCACGTGCTGCCCAGTGAATAGCAAGGGTTTCA
ATGGCATTTTGTTGCCGCAGAGGTTTTGCGTGCATCATGTGCCGTTGGAT
CATCCATGGCTGTTAAAACCAGAAATTTGAATCCTGTACGCTATTTTGTT
CCCTGTTGGTAGGTGACACGGTCAATGATGGATGTGTACAGCTCAGAC
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protein sequence of EsuBft2316_6a-0001

>EsuBft2316_6 ID=EsuBft2316_6|Name=EsuBft2316_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MPSKLSLDAIDDASKSGRRRTMLSKSSFRDASNNSVVCPQGQPSVVGTAS
LDLPAPTS
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mRNA from alignment at Scaffold_562:58154..58701+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2316_6a-0001 ID=EsuBft2316_6a-0001|Name=EsuBft2316_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=548bp|location=Sequence derived from alignment at Scaffold_562:58154..58701+ (Ectocarpus subulatus male Bft15b)
GTAGCGGCTCGTCACTGTTTGACGCCAGCCGCAGCGGCCGAATGGATGCC
GTCTAAGTTGAGCCTAGACGCCATCGATGATGCTAGCAAGAGCGGGAGGA
GAAGGACGATGCTGTCAAAATCGTCCTTCAGGGATGCCAGCAACAACAGC
GTAGTGTGCCCTCAAGGTCAACCTAGCGTTGTGGGGACTGCTAGCCTTGA
CCTTCCCGCCCCCACGTCATAGGGAGTACGCGTAGCCGTCCCCACTCTCC
CGACGCAGTGACCGGCGCCGGCACCGAAGTGGGAGATGGCGCTATTCCCC
GGCACGAGCAGAGGGCGGACAAAGCCAAGGAAGCTCAAGCCTCTGCAGTT
GCGGCGGACAACGGCATCCACGTGCTGCCCAGTGAATAGCAAGGGTTTCA
ATGGCATTTTGTTGCCGCAGAGGTTTTGCGTGCATCATGTGCCGTTGGAT
CATCCATGGCTGTTAAAACCAGAAATTTGAATCCTGTACGCTATTTTGTT
CCCTGTTGGTAGGTGACACGGTCAATGATGGATGTGTACAGCTCAGAC
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Coding sequence (CDS) from alignment at Scaffold_562:58154..58701+

>EsuBft2316_6a-0001 ID=EsuBft2316_6a-0001|Name=EsuBft2316_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_562:58154..58701+ (Ectocarpus subulatus male Bft15b)
ATGCCGTCTAAGTTGAGCCTAGACGCCATCGATGATGCTAGCAAGAGCGG
GAGGAGAAGGACGATGCTGTCAAAATCGTCCTTCAGGGATGCCAGCAACA
ACAGCGTAGTGTGCCCTCAAGGTCAACCTAGCGTTGTGGGGACTGCTAGC
CTTGACCTTCCCGCCCCCACGTCATAG
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