EsuBft2316_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2316_3a-0001
Unique NameEsuBft2316_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:65953..67311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIV1
ProteomeIdEsuBft2316_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length119
Hectar predicted targeting categoryother localisation
Evalue8.11e-54
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_3aEsuBft2316_3aEctocarpus subulatus male Bft15bgeneScaffold_562 65953..67311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_3a-0001-exonEsuBft2316_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 65953..66978 -
EsuBft2316_3a-0001-exonagat-exon-54248Ectocarpus subulatus male Bft15bexonScaffold_562 67145..67311 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_3a-0001-exonagat-three_prime_utr-9270Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_562 65953..66096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_3a-0001-cdsEsuBft2316_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 66097..66978 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_3a-0001-exonagat-five_prime_utr-5968Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_562 67289..67311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2316_3a-0001EsuBft2316_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 66097..67288 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2316_3a-0001 ID=EsuBft2316_3a-0001|Name=EsuBft2316_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1193bp|location=Sequence derived from alignment at Scaffold_562:65953..67311- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAAACTTCTTCGGTCGGACGCGATGAAGGACGTCAACCTGCTCCTCAAG
CATATCGAGACCGGCTGCCTAAGCGACCCTGAGGGTGTGCCGCTGTACTA
CCCGACGGGACAGAATGCCGCGGGGATCACGACTCATCGCTGCGTGCGAG
GCACCAACTGCACCGAGGGTTATCACCGCTACCTTCGCAGGCTGCTGTCA
TCGTACTGTGCATCTCCTGCACTGGCCCATTCTGTTCTCCTCGAGTTCAA
CTTCCGCTGGAACGTGAGGATGGCTGTGAAGAACCGCGGCCTACCAAGGG
AGGTTGGAGAGTTCTTCGACCAGTATGAGATTGAGATCATTCAACGTGAC
ACCGCTAGCTGGTACCCAGACAATCCCCTGTTTCCTGAATGGGTGTCTGC
GCTGGACGTAGCAGATACTGGTGAGAGGAGCGACCTTTCTCAGAGCATGT
GGGGGCCTGCTAGTGGTGGTGACGCGCCGGGCGATCTTGTTGACGAGCAA
GCGTCGCCCCAACATGCCATACCCATGCCAAAGCCCACGCATTCTGCGAA
AAAGTACGCCGAAATGATGAACATCGGCATGCCGTGCACGCCCGTTCACA
CTGGAGCAGAGAGGCGGAAGTTTACATGCGAGATGAACAGCTATCTCTAT
GTGCCGGGAGAGGCGAGGGGGAGGAGGCAGATCTACGAAAGCATTAACTT
TGATAGGTGGTCCCACGAATGGAACAACCATTGTGCCCAAATCGAGAGTG
GCGCCGTAGAGTGGGAGGCAGTGTACCGTAAAACCTCCCACCAGCTGGAG
TCATACTGCAAAAATAATGTAGTTAAACGCGCCAACAGTAGAGTGACGAT
GATGGCTGTACAAAGCATGAATAACTACCTGGGCGCGAGGCTGCAGGAAG
GGGAAAGCGGTGAAAATTTTGACGGATTAGTCGGTACCATGGCCCCTCCT
CCTGTTCAGCGGAGTGTAGCCGGAGGGGGTGCTGCGGGTGCGGAAGGTTT
GCCGGAAGCAGGGGTGCTGCGGGTGCGGAAGGATTGCCGGAAAATGTAGA
GATGGGTGGTGGAGGAGATGATGATATGGGGGATGGTGAGGGTGACGGTG
GAGGCAGGGATGACGTAGGAGAAGCCCCACGTACGAAAGCCAGGGCAGGC
ACACGGGGGGCGCAGATGTGCAGTACGTGCGGCCACCGCAGAC
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protein sequence of EsuBft2316_3a-0001

>EsuBft2316_3 ID=EsuBft2316_3|Name=EsuBft2316_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=341bp
MKDVNLLLKHIETGCLSDPEGVPLYYPTGQNAAGITTHRCVRGTNCTEGY
HRYLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQ
YEIEIIQRDTASWYPDNPLFPEWVSALDVADTGERSDLSQSMWGPASGGD
APGDLVDEQASPQHAIPMPKPTHSAKKYAEMMNIGMPCTPVHTGAERRKF
TCEMNSYLYVPGEARGRRQIYESINFDRWSHEWNNHCAQIESGAVEWEAV
YRKTSHQLESYCKNNVVKRANSRVTMMAVQSMNNYLGARLQEGESGENFD
GLVGTMAPPPVQRSVAGGGAAGAEGLPEAGVLRVRKDCRKM
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mRNA from alignment at Scaffold_562:65953..67311-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2316_3a-0001 ID=EsuBft2316_3a-0001|Name=EsuBft2316_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1359bp|location=Sequence derived from alignment at Scaffold_562:65953..67311- (Ectocarpus subulatus male Bft15b)
AAAAACTTCTTCGGTCGGACGCGATGAAGGACGTCAACCTGCTCCTCAAG
CATATCGAGACCGGCTGCCTAAGCGACCCTGAGGGTGTGCCGCTGTACTA
CCCGACGGGACAGAATGCCGCGGGGATCACGACTCATCGCTGCGTGCGAG
GCACCAACTGCACCGAGGTACCAGTTTTTTTTCGCTCGGCGTGTGCATAT
TATCTCAGGCGTTGCGTCACAGCCCGCTGATGTTGGCATCCCTTCTGATT
ACATCGTCTTCCTGCAGTGCTGGTATTTACGCAACTACTCACCTAGCGTG
TTTCCTCGCCTATTCGACGTACTGCCCTTCAAGGGTTATCACCGCTACCT
TCGCAGGCTGCTGTCATCGTACTGTGCATCTCCTGCACTGGCCCATTCTG
TTCTCCTCGAGTTCAACTTCCGCTGGAACGTGAGGATGGCTGTGAAGAAC
CGCGGCCTACCAAGGGAGGTTGGAGAGTTCTTCGACCAGTATGAGATTGA
GATCATTCAACGTGACACCGCTAGCTGGTACCCAGACAATCCCCTGTTTC
CTGAATGGGTGTCTGCGCTGGACGTAGCAGATACTGGTGAGAGGAGCGAC
CTTTCTCAGAGCATGTGGGGGCCTGCTAGTGGTGGTGACGCGCCGGGCGA
TCTTGTTGACGAGCAAGCGTCGCCCCAACATGCCATACCCATGCCAAAGC
CCACGCATTCTGCGAAAAAGTACGCCGAAATGATGAACATCGGCATGCCG
TGCACGCCCGTTCACACTGGAGCAGAGAGGCGGAAGTTTACATGCGAGAT
GAACAGCTATCTCTATGTGCCGGGAGAGGCGAGGGGGAGGAGGCAGATCT
ACGAAAGCATTAACTTTGATAGGTGGTCCCACGAATGGAACAACCATTGT
GCCCAAATCGAGAGTGGCGCCGTAGAGTGGGAGGCAGTGTACCGTAAAAC
CTCCCACCAGCTGGAGTCATACTGCAAAAATAATGTAGTTAAACGCGCCA
ACAGTAGAGTGACGATGATGGCTGTACAAAGCATGAATAACTACCTGGGC
GCGAGGCTGCAGGAAGGGGAAAGCGGTGAAAATTTTGACGGATTAGTCGG
TACCATGGCCCCTCCTCCTGTTCAGCGGAGTGTAGCCGGAGGGGGTGCTG
CGGGTGCGGAAGGTTTGCCGGAAGCAGGGGTGCTGCGGGTGCGGAAGGAT
TGCCGGAAAATGTAGAGATGGGTGGTGGAGGAGATGATGATATGGGGGAT
GGTGAGGGTGACGGTGGAGGCAGGGATGACGTAGGAGAAGCCCCACGTAC
GAAAGCCAGGGCAGGCACACGGGGGGCGCAGATGTGCAGTACGTGCGGCC
ACCGCAGAC
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Coding sequence (CDS) from alignment at Scaffold_562:65953..67311-

>EsuBft2316_3a-0001 ID=EsuBft2316_3a-0001|Name=EsuBft2316_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1026bp|location=Sequence derived from alignment at Scaffold_562:65953..67311- (Ectocarpus subulatus male Bft15b)
ATGAAGGACGTCAACCTGCTCCTCAAGCATATCGAGACCGGCTGCCTAAG
CGACCCTGAGGGTGTGCCGCTGTACTACCCGACGGGACAGAATGCCGCGG
GGATCACGACTCATCGCTGCGTGCGAGGCACCAACTGCACCGAGGGTTAT
CACCGCTACCTTCGCAGGCTGCTGTCATCGTACTGTGCATCTCCTGCACT
GGCCCATTCTGTTCTCCTCGAGTTCAACTTCCGCTGGAACGTGAGGATGG
CTGTGAAGAACCGCGGCCTACCAAGGGAGGTTGGAGAGTTCTTCGACCAG
TATGAGATTGAGATCATTCAACGTGACACCGCTAGCTGGTACCCAGACAA
TCCCCTGTTTCCTGAATGGGTGTCTGCGCTGGACGTAGCAGATACTGGTG
AGAGGAGCGACCTTTCTCAGAGCATGTGGGGGCCTGCTAGTGGTGGTGAC
GCGCCGGGCGATCTTGTTGACGAGCAAGCGTCGCCCCAACATGCCATACC
CATGCCAAAGCCCACGCATTCTGCGAAAAAGTACGCCGAAATGATGAACA
TCGGCATGCCGTGCACGCCCGTTCACACTGGAGCAGAGAGGCGGAAGTTT
ACATGCGAGATGAACAGCTATCTCTATGTGCCGGGAGAGGCGAGGGGGAG
GAGGCAGATCTACGAAAGCATTAACTTTGATAGGTGGTCCCACGAATGGA
ACAACCATTGTGCCCAAATCGAGAGTGGCGCCGTAGAGTGGGAGGCAGTG
TACCGTAAAACCTCCCACCAGCTGGAGTCATACTGCAAAAATAATGTAGT
TAAACGCGCCAACAGTAGAGTGACGATGATGGCTGTACAAAGCATGAATA
ACTACCTGGGCGCGAGGCTGCAGGAAGGGGAAAGCGGTGAAAATTTTGAC
GGATTAGTCGGTACCATGGCCCCTCCTCCTGTTCAGCGGAGTGTAGCCGG
AGGGGGTGCTGCGGGTGCGGAAGGTTTGCCGGAAGCAGGGGTGCTGCGGG
TGCGGAAGGATTGCCGGAAAATGTAG
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