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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FIV2 |
| ProteomeId | EsuBft2316_2 |
| Protein domains | IPR002562 |
| Protein domains | PTHR13620 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | werner syndrome-like exonuclease os:arabidopsis thaliana gn:wex pe:1 sv:1 [Automatic annotation] |
| Nb exon | 10 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1819 |
| Evalue | 4.97e-192 |
| EggNOG OGs | KOG4373@1|root,KOG4373@2759|Eukaryota |
| Ec32 ortholog description | Ribonuclease H-like domain |
| Ec32 ortholog | Ec-07_007640.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | WRN |
| KEGG ko | ko:K10900,ko:K20777 |
| GOs | GO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113 |
| EC | 3.1.11.1,3.6.4.12 |
| Description | 3'-5' exonuclease activity |
| COG category | C |
| BRITE | ko00000,ko01000,ko03032,ko03400 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0006139 |
| GO | 0003676 |
| GO | 0008408 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2316_2a-0001 ID=EsuBft2316_2a-0001|Name=EsuBft2316_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_562:67313..70230- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATAACCAGAACGACGGGCGCTGCTGGACACGTCAAGACTGGTGATGC TTCCTTCAAGTACGCCAAGGTCATCCGGTTAGCTACTGGCGAAGATGGGA CCCGCGCACGGCCGGTCTACGAAATTTTCACCATCATGAACGAGTACAAC CAGGTGATATTCTCGAAGGTCATGTCCACTGCATCGGTCTACGACCTCAA GAACGACCTGAAGATGTTGTTCGTGAAACGCTTCGTCGGCCATGGTTTCA AGCTCCCGGTCATCTTCTATTCCGACGACTGCTGCGAGGATCGACAACTG CTGCTCTCGATGTTCAAGGAGATAGAGTCGGAGGACCACGTGCGCTTGTA CGATGCCGCTGCAGAGGGTGCGATTGAACTGTTGCCCGAGCTGATGTTCC CCCCTGGCAAGAGAGGCGAGCTCGTCTATGACCTGAGACCTAGCGTCATC GCGATCCCAGTCACGAGCCTTCTGGACGAATGCGAGCGGGTGGAGANGGG CTATATTTGGGGTGGCGTTGGCGTCAACGTCAACTTGGACGCGACATACC TTGCGCGGGACTACAGGGTCCAAGTCGCGAACACCGTGGACCTGGGGGTT TACGCGAGACAGGGCTGGGTGGAGACCCCCTCCTATTCGCTGGCGGGTAT GACGTCTTCTTTGCTCAGGAAAGAGTTGCCGAAGAATGCGATCATCCGCT TGTCTCGCTGGAGTGGTCCTTCCCTAACGGACAAGCAGGTGCCGTTGCAG GTGCAGTACGCCTGCCTGGATGCGTACGCGTCCGTTCTCCTTTGTCAGGA GATCAGAAAACTCCAGGATCCTATTCTCTCCCCTCCTCCGAAGGATTTGC CATCCGGAACCGAGGTACGGCTCTACACCAACAATCATGCCAGCTGTGTT GGTGTTGGAAAAATGGTGGACGATGATGCCGCTGCGGAAGCCTTGGCCAC CTGGGGCGTTAGGGGGAAAGGGCGTGGACAGCGAGCCGTAGTCAGCGTCA GCGAGGTGTTCAAGCCTGCAGCGTACGTGGCACACATGGGTGCACCTCCT GTACCCCCTGCGTCTTCAGATGCGGAAGGTGGACCTGCTACGTCTCCGAG GGCCGGTCATGCGACGATGGAGGACGTGCAGAACGGCGGCGGTGCCCAAC TTGTTCCTTGGGATGTCGACGACGTTCGTCTCGCGAACGAGTGGAAACCA CCTCCTGCAGCAGCAGGGTCTTCAGCGAACGTGAACACGAGTGCAGCTTA CAACGACGACAACCAGGTCTACTCTTACCCGACCCCTCCGCACGTGGTGC AACCAACAGAGGAAGACCCGGACGACGGAGTTGAGGATGGCTGCGACGGC CATGACTGCGGCGACGTTGGTAGCTCCGGCGGTAGCGATCATTGGGGCGG GGCGGGAGGCGAGGCCGAGGGCGAGGGGAGCGGGGGCGGTAGCGGTGCTG ATGTCGCCATGGATTACTGGGGAGGCTGCCAGCCTGCGCTGAACGTTCGC CTGGATATCTTCCACGCACTGCAACGCATTTCGAGGCTGTGTAAGACCAA GCACGGCGCCTTCAAGCCCTTCATGGCGCGACTGAGAGACGCTTGCTTCA TTGTCAACGCGGATGACGTCAAGGAGGCAAGTGCTGTAGAACGAGCGCTT GAAGGCCAAGGGATGACATCGGAAGCCATTGCTGAGTACAAAGACAAGAA CTGGACGTACTTCTTGCGGAATTGCCGGCGATTGGTGCCGGAGCCGAAAC GACTAAATACTCGAACGCTTCAACTCCGTCATTGAAATGTTCGGGAACGT GGTGGATGCGAAATCCGGA back to topprotein sequence of EsuBft2316_2a-0001 >EsuBft2316_2 ID=EsuBft2316_2|Name=EsuBft2316_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=594bp
MITRTTGAAGHVKTGDASFKYAKVIRLATGEDGTRARPVYEIFTIMNEYN QVIFSKVMSTASVYDLKNDLKMLFVKRFVGHGFKLPVIFYSDDCCEDRQL LLSMFKEIESEDHVRLYDAAAEGAIELLPELMFPPGKRGELVYDLRPSVI AIPVTSLLDECERVEXGYIWGGVGVNVNLDATYLARDYRVQVANTVDLGV YARQGWVETPSYSLAGMTSSLLRKELPKNAIIRLSRWSGPSLTDKQVPLQ VQYACLDAYASVLLCQEIRKLQDPILSPPPKDLPSGTEVRLYTNNHASCV GVGKMVDDDAAAEALATWGVRGKGRGQRAVVSVSEVFKPAAYVAHMGAPP VPPASSDAEGGPATSPRAGHATMEDVQNGGGAQLVPWDVDDVRLANEWKP PPAAAGSSANVNTSAAYNDDNQVYSYPTPPHVVQPTEEDPDDGVEDGCDG HDCGDVGSSGGSDHWGGAGGEAEGEGSGGGSGADVAMDYWGGCQPALNVR LDIFHALQRISRLCKTKHGAFKPFMARLRDACFIVNADDVKEASAVERAL EGQGMTSEAIAEYKDKNWTYFLRNCRRLVPEPKRLNTRTLQLRH back to topmRNA from alignment at Scaffold_562:67313..70230- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2316_2a-0001 ID=EsuBft2316_2a-0001|Name=EsuBft2316_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2918bp|location=Sequence derived from alignment at Scaffold_562:67313..70230- (Ectocarpus subulatus male Bft15b) ATGATAACCAGAACGACGGGCGCTGCTGGACACGTCAAGAGTATCTGCAG
CTCCGAGCTCAGCTGATAGATTGTCGTCTGCTAGCTGGTGATGCTTCCTT
CAAGTACGCCAAGGTCATCCGGTTAGCTACTGGCGAAGATGGGACCCGCG
CACGGCCGGTCTACGAAATTTTCACCATCATGAACGAGTACAACCAGGTG
AGGTGACCCTTGTGGTGGAAAGGTGCTTGCTGGTAATTTGTCCATACATA
TACGCGTACCGTATCACACGCCAGTACGCCTGTGTCAGCATTGACAAGTC
GTGGAAGGCATGAAATTACATCCTCCCGATTGCTTTTTCTCCCAGGTGAT
ATTCTCGAAGGTCATGTCCACTGCATCGGTCTACGACCTCAAGAACGACC
TGAAGATGTTGTTCGTGAAACGCTTCGTCGGCCATGGTTTCAAGCTCCCG
GTCATCTTCTATTCCGGTACGTTGGGTGTTATCAGTTGCCTCGGGCAAAT
ACAGGTCAGGTCATGTCTTGGGTGGGTTGCGTGGAATCGTGCAGAATACC
GCGGACCTTTAATCCCGCTTCCACTTATATTTCTTGCACAGACGACTGCT
GCGAGGATCGACAACTGCTGCTCTCGATGTTCAAGGAGATAGAGTCGGAG
GACCACGTGCGCTTGTACGATGCCGCTGCAGAGGGTGCGATTGAACTGTT
GCCCGAGCTGATGTTCCCCCCTGGCAAGAGAGGCGAGCTCGTCTATGACC
TGAGACCTAGCGTCATCGCGATCCCAGTCACGAGCCTTCTGGACGAATGC
GAGCGGGTGGAGANGGGCTATATTTGGGGTGGCGTGTTTTACAGCGCTTT
GCCAACAGCGCCAACCCACTGAAGTCTAGATTGCGCGGGGGGTTGGGGGT
GGGTCTTGTTTTTTTCGTTGAGGCACTTTTCGTTTAGTCACTTGTGTCTC
GTTTTTTTATGCTTGATTAAGCTTTTCGTTTCTTTACTTCTGCAGGTTGG
CGTCAACGTCAACTTGGACGCGACATACCTTGCGCGGGACTACAGGGTCC
AAGTCGCGAACACCGTGGACCTGGGGGTTTACGCGAGACAGGGCTGGGTG
GAGACCCCCTCCTATTCGCTGGCGGGTATGACGTCTTCTTTGCTCAGGAA
AGAGTTGCCGAAGAATGCGATCATCCGCTTGTCTCGCTGGAGTGGTCCTT
CCCTAACGGACAAGCAGGTGTTTTATTTCGGATGCAGCGCTCGTGTTTTT
TTTTTGTCGGCTACTTGGTCCGTTGCGCCATTTTTTTTTGCATTGCGCAT
ATGATGTATGCTTAAACGCTATTTCTGTGACTCCCTGCCAAGGCCGTTGC
AGGTGCAGTACGCCTGCCTGGATGCGTACGCGTCCGTTCTCCTTTGTCAG
GAGATCAGAAAACTCCAGGATCCTATTCTCTCCCCTCCTCCGAAGGATTT
GCCATCCGGAACCGAGGTGCGTGGATGCAGTTACGGAAGCCTCGCGTTAT
TCGGCCCAAGTTACCCGCCCCCGGCCAAAGCTCATACTTGGGTAATCTTC
ACCATGACGTCGCCTTTCCTGTTGCATGCTACCGCTGCCGTTTTTGCTCT
CGTCTCGATTATGCCAGGTACGGCTCTACACCAACAATCATGCCAGCTGT
GTTGGTGTTGGAAAAATGGTGGACGATGATGCCGCTGCGGAAGCCTTGGC
CACCTGGGGCGTTAGGGGGAAAGGGCGTGGACAGCGAGCCGTAGTCAGCG
TCAGCGAGGTGTTCAAGCCTGCAGCGTACGTGGCACACATGGGTGCACCT
CCTGTACCCCCTGCGTCTTCAGATGCGGAAGGTGGACCTGCTACGTCTCC
GAGGGCCGGTCATGCGACGATGGAGGACGTGCAGAACGGCGGCGGTGCCC
AACTTGTTCCTTGGGATGTCGACGACGTTCGTCTCGCGAACGAGTGGAAA
CCACCTCCTGCAGCAGCAGGGTCTTCAGCGAACGTGAACACGAGTGCAGC
TTACAACGACGACAACCAGGTCTACTCTTACCCGACCCCTCCGCACGTGG
TGCAACCAACAGGTAAAATTCCTGGCGCCCATCCACCGTCGTTGAAATCG
TGCTGAACGGTTGTACTTACGCCTTTCCTGACCGACGTTTTCTCTCTTTC
CCCGTTTTTCTTCGCGTGTATGTTCGCAGAGGAAGACCCGGACGACGGAG
TTGAGGATGGCTGCGACGGCCATGACTGCGGCGACGTTGGTAGCTCCGGC
GGTAGCGATCATTGGGGCGGGGCGGGAGGCGAGGCCGAGGGCGAGGGGAG
CGGGGGCGGTAGCGGTGCTGATGTCGCCATGGATTACTGGGTGAGTGGTC
TCGAAGCGTGGGTGGCAGCTTTTTTCGAGACTGTTTTTCGTATTGCGCTG
TTTTTGTTTCATCCGGCGTTCCAATATCGTTGTTGAATGTGCGCCAACTG
TTTTCAGGGAGGCTGCCAGCCTGCGCTGAACGTTCGCCTGGATATCTTCC
ACGCACTGCAACGCATTTCGAGGCTGTGTAAGACCAAGCACGGCGCCTTC
AAGCCCTTCATGGCGCGACTGAGAGACGCTTGCTTCATTGTCAACGCGGA
TGACGTCAAGGAGGCAAGTGCTGTTGACGTCGTTGTCCTTGGCGTTTAAA
TTGCTGTCGACGTGAGTAGGCCTGGAACTTCGGCATCAACGTATGTATAT
CATGACCAACATCAAATCTCGCTTTAAACCGCAGGTAGAACGAGCGCTTG
AAGGCCAAGGGATGACATCGGAAGCCATTGCTGAGTACAAAGACAAGAAC
TGGACGTACTTCTTGCGGAATTGCCGGCGATTGGTGCCGGAGCCGAAACG
ACTAAATACTCGAACGCTTCAACTCCGTCATTGAAATGTTCGGGAACGTG
GTGGATGCGAAATCCGGA back to topCoding sequence (CDS) from alignment at Scaffold_562:67313..70230- >EsuBft2316_2a-0001 ID=EsuBft2316_2a-0001|Name=EsuBft2316_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1785bp|location=Sequence derived from alignment at Scaffold_562:67313..70230- (Ectocarpus subulatus male Bft15b) ATGATAACCAGAACGACGGGCGCTGCTGGACACGTCAAGACTGGTGATGC TTCCTTCAAGTACGCCAAGGTCATCCGGTTAGCTACTGGCGAAGATGGGA CCCGCGCACGGCCGGTCTACGAAATTTTCACCATCATGAACGAGTACAAC CAGGTGATATTCTCGAAGGTCATGTCCACTGCATCGGTCTACGACCTCAA GAACGACCTGAAGATGTTGTTCGTGAAACGCTTCGTCGGCCATGGTTTCA AGCTCCCGGTCATCTTCTATTCCGACGACTGCTGCGAGGATCGACAACTG CTGCTCTCGATGTTCAAGGAGATAGAGTCGGAGGACCACGTGCGCTTGTA CGATGCCGCTGCAGAGGGTGCGATTGAACTGTTGCCCGAGCTGATGTTCC CCCCTGGCAAGAGAGGCGAGCTCGTCTATGACCTGAGACCTAGCGTCATC GCGATCCCAGTCACGAGCCTTCTGGACGAATGCGAGCGGGTGGAGANGGG CTATATTTGGGGTGGCGTTGGCGTCAACGTCAACTTGGACGCGACATACC TTGCGCGGGACTACAGGGTCCAAGTCGCGAACACCGTGGACCTGGGGGTT TACGCGAGACAGGGCTGGGTGGAGACCCCCTCCTATTCGCTGGCGGGTAT GACGTCTTCTTTGCTCAGGAAAGAGTTGCCGAAGAATGCGATCATCCGCT TGTCTCGCTGGAGTGGTCCTTCCCTAACGGACAAGCAGGTGCCGTTGCAG GTGCAGTACGCCTGCCTGGATGCGTACGCGTCCGTTCTCCTTTGTCAGGA GATCAGAAAACTCCAGGATCCTATTCTCTCCCCTCCTCCGAAGGATTTGC CATCCGGAACCGAGGTACGGCTCTACACCAACAATCATGCCAGCTGTGTT GGTGTTGGAAAAATGGTGGACGATGATGCCGCTGCGGAAGCCTTGGCCAC CTGGGGCGTTAGGGGGAAAGGGCGTGGACAGCGAGCCGTAGTCAGCGTCA GCGAGGTGTTCAAGCCTGCAGCGTACGTGGCACACATGGGTGCACCTCCT GTACCCCCTGCGTCTTCAGATGCGGAAGGTGGACCTGCTACGTCTCCGAG GGCCGGTCATGCGACGATGGAGGACGTGCAGAACGGCGGCGGTGCCCAAC TTGTTCCTTGGGATGTCGACGACGTTCGTCTCGCGAACGAGTGGAAACCA CCTCCTGCAGCAGCAGGGTCTTCAGCGAACGTGAACACGAGTGCAGCTTA CAACGACGACAACCAGGTCTACTCTTACCCGACCCCTCCGCACGTGGTGC AACCAACAGAGGAAGACCCGGACGACGGAGTTGAGGATGGCTGCGACGGC CATGACTGCGGCGACGTTGGTAGCTCCGGCGGTAGCGATCATTGGGGCGG GGCGGGAGGCGAGGCCGAGGGCGAGGGGAGCGGGGGCGGTAGCGGTGCTG ATGTCGCCATGGATTACTGGGGAGGCTGCCAGCCTGCGCTGAACGTTCGC CTGGATATCTTCCACGCACTGCAACGCATTTCGAGGCTGTGTAAGACCAA GCACGGCGCCTTCAAGCCCTTCATGGCGCGACTGAGAGACGCTTGCTTCA TTGTCAACGCGGATGACGTCAAGGAGGCAAGTGCTGTAGAACGAGCGCTT GAAGGCCAAGGGATGACATCGGAAGCCATTGCTGAGTACAAAGACAAGAA CTGGACGTACTTCTTGCGGAATTGCCGGCGATTGGTGCCGGAGCCGAAAC GACTAAATACTCGAACGCTTCAACTCCGTCATTGA back to top
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