EsuBft2314_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2314_4a-0001
Unique NameEsuBft2314_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:88738..89453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2314_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length71
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_4aEsuBft2314_4aEctocarpus subulatus male Bft15bgeneScaffold_68 88738..89453 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_4a-0001-exonEsuBft2314_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 88738..89453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_4a-0001-cdsEsuBft2314_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 88738..88899 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_4a-0001-exonagat-three_prime_utr-9265Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 88900..89453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_4a-0001EsuBft2314_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 88738..88899 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2314_4a-0001 ID=EsuBft2314_4a-0001|Name=EsuBft2314_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=716bp|location=Sequence derived from alignment at Scaffold_68:88738..89453+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGTCATTTGGATCGGCCAGGAACGCGTACACCCACTCTCTGCG
AGGGGTGTGGGAAGAATGCAGCGACAAGCCGTGGTTAACAAAGAGCGCCT
ACCGCGCCATGGTCTTACCGCCGATCTCCGCCGCGTCCAAAGGACGTACG
TCACTCATCTGACTGTTGGCGTTTCGTGTCATGAGCCTGGCATTTTTCGG
TTTTTCTGTTTCATTATCCTGCGCGGGCAGACGGCTTGGGCTTGTTCACC
TGTGAGGCTCCCACTCTTCTCCATCGGCCACGCAAGTCGCAGAATCCGTC
GTCTCGTTGCCGCTGGGGTACCAATACATCTGCTCCAGTCAAGCAACGGG
TGTCATGTGTTTGTCAGTTACCTCGACCGCAGCGATGCTAGAGCGCCTCT
AATTTGAAGAGGTGAGATCGACGCGGCCCGAGTATACTTTTCTGCTAGTG
GTACACAGCAGTGATGAGACCTGGAGGTTGGCATTCTTGGTTCGCCCCAC
AGCAGGCGGATCAAACGACCTCCCGCCGATCCGCGTCGGCAATGGGGACG
GCCGGTCTCGTGGTGCTTTAGCAGCATCACTTCGATGCCGTTGGCTCCTG
TGGCTTCGCAGGTGATGTATTGTGCCGAGTCTAGGTTACAACGTTTTGTT
TGTGGGTCGCGCCCCAGTCCGCGTGTTGCTGAACAATGAGGACGAAAATC
GAGACCCGAACACCCA
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protein sequence of EsuBft2314_4a-0001

>EsuBft2314_4 ID=EsuBft2314_4|Name=EsuBft2314_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MEASFGSARNAYTHSLRGVWEECSDKPWLTKSAYRAMVLPPISAASKGRT
SLI
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mRNA from alignment at Scaffold_68:88738..89453+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2314_4a-0001 ID=EsuBft2314_4a-0001|Name=EsuBft2314_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=716bp|location=Sequence derived from alignment at Scaffold_68:88738..89453+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCGTCATTTGGATCGGCCAGGAACGCGTACACCCACTCTCTGCG
AGGGGTGTGGGAAGAATGCAGCGACAAGCCGTGGTTAACAAAGAGCGCCT
ACCGCGCCATGGTCTTACCGCCGATCTCCGCCGCGTCCAAAGGACGTACG
TCACTCATCTGACTGTTGGCGTTTCGTGTCATGAGCCTGGCATTTTTCGG
TTTTTCTGTTTCATTATCCTGCGCGGGCAGACGGCTTGGGCTTGTTCACC
TGTGAGGCTCCCACTCTTCTCCATCGGCCACGCAAGTCGCAGAATCCGTC
GTCTCGTTGCCGCTGGGGTACCAATACATCTGCTCCAGTCAAGCAACGGG
TGTCATGTGTTTGTCAGTTACCTCGACCGCAGCGATGCTAGAGCGCCTCT
AATTTGAAGAGGTGAGATCGACGCGGCCCGAGTATACTTTTCTGCTAGTG
GTACACAGCAGTGATGAGACCTGGAGGTTGGCATTCTTGGTTCGCCCCAC
AGCAGGCGGATCAAACGACCTCCCGCCGATCCGCGTCGGCAATGGGGACG
GCCGGTCTCGTGGTGCTTTAGCAGCATCACTTCGATGCCGTTGGCTCCTG
TGGCTTCGCAGGTGATGTATTGTGCCGAGTCTAGGTTACAACGTTTTGTT
TGTGGGTCGCGCCCCAGTCCGCGTGTTGCTGAACAATGAGGACGAAAATC
GAGACCCGAACACCCA
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Coding sequence (CDS) from alignment at Scaffold_68:88738..89453+

>EsuBft2314_4a-0001 ID=EsuBft2314_4a-0001|Name=EsuBft2314_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_68:88738..89453+ (Ectocarpus subulatus male Bft15b)
ATGGAAGCGTCATTTGGATCGGCCAGGAACGCGTACACCCACTCTCTGCG
AGGGGTGTGGGAAGAATGCAGCGACAAGCCGTGGTTAACAAAGAGCGCCT
ACCGCGCCATGGTCTTACCGCCGATCTCCGCCGCGTCCAAAGGACGTACG
TCACTCATCTGA
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