Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FI08 |
| ProteomeId | EsuBft2314_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 137 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.09e-121 |
| EggNOG OGs | 2DCSR@1|root,2S5KN@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2314_3a-0001 ID=EsuBft2314_3a-0001|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1379bp|location=Sequence derived from alignment at Scaffold_68:96038..98484- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGGGAT
CATATCCCAGTGCAATCCCGTATCTCATGGGATGTTGAAACAGCTTGGCA
AACTTGCTGAGTTGAAACAAAAGGGTCTGATTCTTGACCGTCACTTCGAG
ACAATCAAAGCACACGTGAAGGTGGGCAACTCCGTTGCTAAGGAGCGATG
GGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCGACG
AAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGCAGGGTATTACCAGC
AGCACCCGCATGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGCGAGG
TGCTGCACCGCCGTCTCAGCACCCACCTGCTGCTGCAGGTACCGCAAGGA
GAAAGGCCGTGGATCGCGGGAAACAAGTTAGGGAGAGAGCTGCCAAAGGC
ACTTTAGGCGGCAACATCTGCATCGCGTTCGCGATTGGCAGCCGAGGACC
GATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCG
CGTCGCTGATAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGA
GCGGCCATGGCAAGACTCAACAGCCAGATGGCGTACAGATACCGTCTTTT
CGAAAAGTGCGGGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAC
TCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGAC
AGTAGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGG
GCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTAG
ACTCAAGCGATGAAGACAACGGCGACATCTCTCAACCCCAGACCGACGAG
CTAGCTCTTGTGGACGACGACGACAGCATGGACCCACAAGACCCGGAGGA
TGAGATACAGGGAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTA
ATCCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGG
CTGGGCATGGGGTGGTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGA
CACTCGCCACGTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTA
CGCGCAAGATAAAGTTGCCCTTGGACAAGTACAGTCGAGATTCGGATGCG
GCTGTAGGCTCCTGGGTTTTGCTTGAGAGCATAAGTAGATCAGGAAGGGT
ACGCAGGACCAACGTCACCCTTGTGGACCAAGAAGGTCGACAGTTGCTGC
TCCATGCCTTGGTTTTTACTTGTATCGACAGCAGTACTAGTGTTGCTCAT
GGTTGACAGCCGACAATATAGCAAATGGT back to topprotein sequence of EsuBft2314_3a-0001 >EsuBft2314_3 ID=EsuBft2314_3|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=451bp
MPRNVQRATSCLRCRGIISQCNPVSHGMLKQLGKLAELKQKGLILDRHFE
TIKAHVKVGNSVAKERWDAIESAWGLKQNGVFDEEEWVTQIDGETQGITS
STRMSSSSQQDAGSARGAAPPSQHPPAAAGTARRKAVDRGKQVRERAAKG
TLGGNICIAFAIGSRGPMDIWLEQSDNLERWETASLIASDRRVLITQWMG
AAMARLNSQMAYRYRLFEKCGMAMTVDGSGDDRLTLEGLDKPYTFANDED
SSDDEQGSENGNDEPEGRAEEGDGGRETLMEGVDSSDEDNGDISQPQTDE
LALVDDDDSMDPQDPEDEIQGMEIPAGFRIQEANPVALDRLLLRRGVLVR
LGMGWFGGLITQQSQKDTRHVYDYCVQLELDQSTRKIKLPLDKYSRDSDA
AVGSWVLLESISRSGRVRRTNVTLVDQEGRQLLLHALVFTCIDSSTSVAH
G back to topmRNA from alignment at Scaffold_68:96038..98484- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2314_3a-0001 ID=EsuBft2314_3a-0001|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2447bp|location=Sequence derived from alignment at Scaffold_68:96038..98484- (Ectocarpus subulatus male Bft15b)
ATGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGGGAT
CATATCCCAGTGCAATCCCGTATCTCATGGGATGTTGAAACAGCTTGGCA
AACTTGCTGAGTTGAAACAAAAGGGTCTGATTCTTGACCGTCACTTCGAG
ACAATCAAAGCACACGTGAAGGTGGGCAACTCCGTTGCTAAGGAGCGATG
GGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCGACG
AAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGCAGGGTATTACCAGC
AGCACCCGCATGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGCGAGG
TGCTGCACCGCCGTCTCAGCACCCACCTGCTGCTGCAGGTACCGCAAGGA
GAAAGGCCGTGGATCGCGGGAAACAAGTTAGGGAGAGAGCTGCCAAAGGC
ACTTTAGGCGGCAACATCTGCATCGCGTTCGCGATTGGCAGCCGAGGACC
GGTGAGCACACAGTTACTTTTCGCTACCGGTGTAGTCTACATACACTATT
TTCCTTTTTCAAGAAAAACTCCCGTGAAAACGATGACATGATGAGGGCCA
TTTTTTTTCAGTAGCGGCGCGTAATAAAAAAAAAAAAGAGAAAGTTCGTA
GTTTTGGGGCTGGCCTCTGCTGGCAACGACTGCGTTTCGCACGCCGTTTC
TTGCTGTAGGTGCCCAAGCAAGTGGAGGAGTGTCGAGTTCTCGTCAACTG
CGTCTGCTGGCAAGGGCCAACTCCGGTGCAAATACTCCGGAAAAGTTAAG
CCTTTTTCAGATTCGTGGAATGCTGCTGCTGTGTAGACATGATAAGATAA
AATTTTCGTCCATCCCCCTTTTTAAAAGAAGATAGTGTAGACAGATATTC
TAGTTTGGATGCCGGCGACGTTGTTTTGGCGTCACAACAGTGAACATTCT
CTGCTTGATACTTAGTTTGAATAGTCACGAACGAAACAGACAGCTTTCGG
CTCTCCACGGAGGTTTGAGGTCGAAAGCGCCACACTCCATAGCGAACGAT
ACATGACATGACTCGTTGAATCACCCCCCCGGCAACTCCGCCCTGCTTCC
ACCTTGCCATGCAGATTGAGCGGACTCGCGGTGGAGTGAAAGAGCTCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCGGGAGGCAGATGGAC
ATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCT
GATAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGAGCGGCCA
TGGCAAGACTCAACAGCCAGATGGCGTACAGATACCGTCTTTTCGAAAAG
TGCGGGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGACTCACCTT
GGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGACAGTAGCG
ACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCG
GAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTAGACTCAAG
CGATGAAGACAACGGCGGTAAGTTTGTTTTGCACAAAACCAACTCTTCAT
CTTCTTTTTGTTGATGACGATGTCCTTCATGTTGACGTTAGCTTGTTTCC
GCCCACGGCTACACTCAAACTATGAAAACTTCAGGTTGAGTTTGGCGACG
TGACACCCTAACTTCTTGTGTTTCCCGTTGCCTCGTTCGCAGACATCTCT
CAACCCCAGACCGACGAGCTAGCTCTTGTGGACGACGACGACAGCATGGA
CCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATCCCGGCAGGCT
TTCGTATTCAAGAAGCTAATCCCGTTGCTCTTGACAGATTGCTTTTGCGG
CGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAGGGCTGATCAC
TCAACAATCTCAGAAGGACACTCGCCACGTGTACGACTACTGTGTGCAGC
TGGAGCTAGACCAGAGTACGCGCAAGATAAAGTTGCCCTTGGACAAGTAC
AGTCGAGATTCGGATGCGGCTGTAGGCTCCTGGGTTTTGCTTGAGAGCAT
AAGTAGATCAGGAAGGGTACGCAGGACCAACGTCACCCTTGTGGACCAAG
AAGGTCGACAGTTGCTGCTCCATGCCTTGGTTTTTACTTGTATCGACAGC
AGTACTAGTGTTGCTCATGGTTGACAGCCGACAATATAGCAAATGGT back to topCoding sequence (CDS) from alignment at Scaffold_68:96038..98484- >EsuBft2314_3a-0001 ID=EsuBft2314_3a-0001|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1356bp|location=Sequence derived from alignment at Scaffold_68:96038..98484- (Ectocarpus subulatus male Bft15b)
ATGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGGGAT
CATATCCCAGTGCAATCCCGTATCTCATGGGATGTTGAAACAGCTTGGCA
AACTTGCTGAGTTGAAACAAAAGGGTCTGATTCTTGACCGTCACTTCGAG
ACAATCAAAGCACACGTGAAGGTGGGCAACTCCGTTGCTAAGGAGCGATG
GGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCGACG
AAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGCAGGGTATTACCAGC
AGCACCCGCATGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGCGAGG
TGCTGCACCGCCGTCTCAGCACCCACCTGCTGCTGCAGGTACCGCAAGGA
GAAAGGCCGTGGATCGCGGGAAACAAGTTAGGGAGAGAGCTGCCAAAGGC
ACTTTAGGCGGCAACATCTGCATCGCGTTCGCGATTGGCAGCCGAGGACC
GATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCG
CGTCGCTGATAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGA
GCGGCCATGGCAAGACTCAACAGCCAGATGGCGTACAGATACCGTCTTTT
CGAAAAGTGCGGGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAC
TCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGAC
AGTAGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGG
GCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTAG
ACTCAAGCGATGAAGACAACGGCGACATCTCTCAACCCCAGACCGACGAG
CTAGCTCTTGTGGACGACGACGACAGCATGGACCCACAAGACCCGGAGGA
TGAGATACAGGGAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTA
ATCCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGG
CTGGGCATGGGGTGGTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGA
CACTCGCCACGTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTA
CGCGCAAGATAAAGTTGCCCTTGGACAAGTACAGTCGAGATTCGGATGCG
GCTGTAGGCTCCTGGGTTTTGCTTGAGAGCATAAGTAGATCAGGAAGGGT
ACGCAGGACCAACGTCACCCTTGTGGACCAAGAAGGTCGACAGTTGCTGC
TCCATGCCTTGGTTTTTACTTGTATCGACAGCAGTACTAGTGTTGCTCAT
GGTTGA back to top
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