EsuBft2310_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2310_3a-0001
Unique NameEsuBft2310_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:507210..508095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2310_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length65
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBTB/POZ fold
Ec32 orthologEc-07_007780.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2310_3aEsuBft2310_3aEctocarpus subulatus male Bft15bgeneScaffold_630 507210..508095 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2310_3a-0001-exonEsuBft2310_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 507210..507470 -
EsuBft2310_3a-0001-exonagat-exon-12250Ectocarpus subulatus male Bft15bexonScaffold_630 507584..507888 -
EsuBft2310_3a-0001-exonagat-exon-12251Ectocarpus subulatus male Bft15bexonScaffold_630 508008..508095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2310_3a-0001-cdsEsuBft2310_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 507210..507470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2310_3a-0001EsuBft2310_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 507210..508095 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2310_3a-0001 ID=EsuBft2310_3a-0001|Name=EsuBft2310_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=654bp|location=Sequence derived from alignment at Scaffold_630:507210..508095- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCGGTGGCTCGCCCGCCTACGTGCACCGCTCTCTCGTTGCAAA
GGCTGGGCGGGAATCTGCCTTCGGCGCCTTGATCGGCGTGAGTGAAGAGC
AGAGTTTGCGTTCCGTCGTGGCTGCGGACGAGGAGGCAAACCTGCCGTAC
ATTTCACGTGTGCTGGGGTTGTCAGCGGCCATTCCTACGTTCCAGAAGCG
CATGTTGGTGGAAGGCGGTAGCGTAATCACCGGCAGCCCTTTCGATATTC
CGGTATGGAGTTCCTTGATTCGAGGCTGGTGCCTAAAAGACTCCAATAGA
CTTCGGCTTCTCTTCCGCGCATCCCGAGATGGGTTTTCCTTCGAGAAGTT
CCGCCGTGCGGTCGGCTGGACCACCACGACGACGATAGTCCTGGCTTCGA
ACCAGTCAAGTGGGGCTATAAAGTCTGGCAGCGAAGAAAATGCAGTGAAC
TGCTGTGGGGACAACTCTTCTTCCTTATCCTTCGGGGCCTGCTTCGGCAA
TCACGCCATGCGCGTGAACTTCCACCCGACCACCGGGTGCACCCTGTCAG
TCAGCTGGACGCGAGAAACATACGATGTCGACGGAGAATCCACCTTTCTT
TATTGCTCTCAATGGTGGGCTTGTCCTGGACGTCGGGTCTTTACATTGTC
CTAA
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protein sequence of EsuBft2310_3a-0001

>EsuBft2310_3 ID=EsuBft2310_3|Name=EsuBft2310_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=217bp
MNIGGSPAYVHRSLVAKAGRESAFGALIGVSEEQSLRSVVAADEEANLPY
ISRVLGLSAAIPTFQKRMLVEGGSVITGSPFDIPVWSSLIRGWCLKDSNR
LRLLFRASRDGFSFEKFRRAVGWTTTTTIVLASNQSSGAIKSGSEENAVN
CCGDNSSSLSFGACFGNHAMRVNFHPTTGCTLSVSWTRETYDVDGESTFL
YCSQWWACPGRRVFTLS
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mRNA from alignment at Scaffold_630:507210..508095-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2310_3a-0001 ID=EsuBft2310_3a-0001|Name=EsuBft2310_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=886bp|location=Sequence derived from alignment at Scaffold_630:507210..508095- (Ectocarpus subulatus male Bft15b)
ATGAACATCGGTGGCTCGCCCGCCTACGTGCACCGCTCTCTCGTTGCAAA
GGCTGGGCGGGAATCTGCCTTCGGCGCCTTGATCGGCGGTATCTGGGACA
AGAGAGAGTCCCACATGATTGAGACGGCCGCATCGTGCTGGACGAGTCTC
CAACCTGCCCCAAGCACATCATCTATACCCTACTCAACAGCTCTGTCACA
CCATCAGTGAGTGAAGAGCAGAGTTTGCGTTCCGTCGTGGCTGCGGACGA
GGAGGCAAACCTGCCGTACATTTCACGTGTGCTGGGGTTGTCAGCGGCCA
TTCCTACGTTCCAGAAGCGCATGTTGGTGGAAGGCGGTAGCGTAATCACC
GGCAGCCCTTTCGATATTCCGGTATGGAGTTCCTTGATTCGAGGCTGGTG
CCTAAAAGACTCCAATAGACTTCGGCTTCTCTTCCGCGCATCCCGAGATG
GGTTTTCCTTCGAGAAGTTCCGCCGTGCGGTCGGCTGGACCACCACGACG
ACGATAGTCCTGGTTCAAGCTAGGCGAACCGAGAGCACCAGCATCGTTGG
CACCCACCGTCATCACATAGCGGACCACGACGGTCGAACTCGGCCTTCAT
TTTAATGCTCGCTTCTCCGTGAAAGGCTTCGAACCAGTCAAGTGGGGCTA
TAAAGTCTGGCAGCGAAGAAAATGCAGTGAACTGCTGTGGGGACAACTCT
TCTTCCTTATCCTTCGGGGCCTGCTTCGGCAATCACGCCATGCGCGTGAA
CTTCCACCCGACCACCGGGTGCACCCTGTCAGTCAGCTGGACGCGAGAAA
CATACGATGTCGACGGAGAATCCACCTTTCTTTATTGCTCTCAATGGTGG
GCTTGTCCTGGACGTCGGGTCTTTACATTGTCCTAA
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Coding sequence (CDS) from alignment at Scaffold_630:507210..508095-

>EsuBft2310_3a-0001 ID=EsuBft2310_3a-0001|Name=EsuBft2310_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=654bp|location=Sequence derived from alignment at Scaffold_630:507210..508095- (Ectocarpus subulatus male Bft15b)
ATGAACATCGGTGGCTCGCCCGCCTACGTGCACCGCTCTCTCGTTGCAAA
GGCTGGGCGGGAATCTGCCTTCGGCGCCTTGATCGGCGTGAGTGAAGAGC
AGAGTTTGCGTTCCGTCGTGGCTGCGGACGAGGAGGCAAACCTGCCGTAC
ATTTCACGTGTGCTGGGGTTGTCAGCGGCCATTCCTACGTTCCAGAAGCG
CATGTTGGTGGAAGGCGGTAGCGTAATCACCGGCAGCCCTTTCGATATTC
CGGTATGGAGTTCCTTGATTCGAGGCTGGTGCCTAAAAGACTCCAATAGA
CTTCGGCTTCTCTTCCGCGCATCCCGAGATGGGTTTTCCTTCGAGAAGTT
CCGCCGTGCGGTCGGCTGGACCACCACGACGACGATAGTCCTGGCTTCGA
ACCAGTCAAGTGGGGCTATAAAGTCTGGCAGCGAAGAAAATGCAGTGAAC
TGCTGTGGGGACAACTCTTCTTCCTTATCCTTCGGGGCCTGCTTCGGCAA
TCACGCCATGCGCGTGAACTTCCACCCGACCACCGGGTGCACCCTGTCAG
TCAGCTGGACGCGAGAAACATACGATGTCGACGGAGAATCCACCTTTCTT
TATTGCTCTCAATGGTGGGCTTGTCCTGGACGTCGGGTCTTTACATTGTC
CTAA
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