EsuBft2310_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2310_2a-0001
Unique Name	EsuBft2310_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:502661..504981 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2310_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Length	196
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2310_2a	EsuBft2310_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 502661..504981 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2310_2a-0001	EsuBft2310_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 502661..504905 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2310_2a-0001-exon	agat-exon-12248	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 502661..503435 +
EsuBft2310_2a-0001-exon	EsuBft2310_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 503498..503761 +
EsuBft2310_2a-0001-exon	agat-exon-12249	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 503903..504103 +
EsuBft2310_2a-0001-exon	agat-exon-12247	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 504159..504296 +
EsuBft2310_2a-0001-exon	agat-exon-12246	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 504394..504981 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2310_2a-0001-cds	EsuBft2310_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 502661..503435 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2310_2a-0001-exon	agat-three_prime_utr-9256	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 504906..504981 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:502661..504981+
coding sequence from alignment at Scaffold_630:502661..504981+

spliced messenger RNA

>EsuBft2310_2a-0001 ID=EsuBft2310_2a-0001|Name=EsuBft2310_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1966bp|location=Sequence derived from alignment at Scaffold_630:502661..504981+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCTTCGCGGAGGCAGGGCAGAAGGTGGTTGAGTCGATGCGGTC
CAACTCGCGAGAGAACACCACCGTGGTCACCACCATCAGCGCCAATGGTG
TCACGTGGGCGCCAATCACTATCTTCAAAGGACAGCGACTTCAGCCTGAC
TGGTTCGCCGAGAGGAACTGCCCGAGGGATGCGAGGTACGCCGGGATTCG
AACCCCTGACCTGAACCTGAGAAGGGTTCGAGGTGACCAACAAGACCACC
GGGTTCTTATTACCCGGGTGGTTGATAATACCCGCCGCTGTTCTAAGCAT
CAAATGCCTGGCACCAAACCACGAAACGATCTACTGGAAGTATCACCGAC
CAGGTGCGTTTCAGCAGCAGCGGAGGAACGGCGAGTTTGGCGGCGAGTCT
GTGTGTTGGCAGCAGCAGCAGCAGCAGCCAGGCGTGGTGTATGGCGGAGA
CTCTCAGCAACAGCCGCGGCAATAACAGGTAGCGGCCGGCTTCACCAGGG
GTGCAGGTGGACAGTGCGTGGTGAGGTGTTTGTTGGTGAGAAGGGGGGGG
GGGCTGCTGCCGGTTCGTCTGCGGCGTATTTGCCGGTAAAAGCCCCCGCC
AACGCAGCTTCTCTCAACGTAAACACACACTCCGCCACTCGCTCTCCCCA
GCGGCCCGCAACATCACGTGTAGCACCTGCAGTAGTGCGGCAACGCGATG
AGCTGGACCTCATGGAGGGCGGATACAGCAGTAGACGTGTAGCGGAGGAA
CACATGCATGCTTGGATCGCATCACCATCGTCCCTGGTCGCCGCGTTGGC
GCCGGGTACTCAGACAGACGCAGCGGCGATGGCGGCGGCGTCGGTGACGG
GGGGAACGGCAGCGGCAGCAGCAGCTGCGGCGTCCCCGGTCGCCGCGTTG
GCGTCGGGCATCCGGACGACCGCAGCGGCGGCGGTAGCGACATCGATCGG
TGACGGGGGGGACGGCAGCGGCGACAGCAGCAGCGGCGTCCCCGGTCGCC
GCGTTGGCGTCGGGCATCCGGACGACCGCAGCGGCGGCGCGGCGACAGCA
GCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGCATCCGGACGACCGC
AGCGGCGGCGGTAGCGACATCGATCGGTGACGGGGGGGACGGCAGCGGCG
ACAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGTGTCCAGAC
GGCCGCAAGGGCGGCGGCGGCGGCGGCACCGGTGACGAAGTCCTAGAGGA
GCGCGATAGCCAATGTGCTGGGGTGGACGTGAGCAACAGCAGCAGCAGCA
GCAGCAGTAGCAGCAGCTGCAGCAGCGACGACAGCGGCGGCGATGGGAGC
GGCGATGAGGGGTTGGATGACATCTGGACGGCGGCGATGGGAGCGGGGAT
GAGGGGCTGGATGAAACCTGGAGTGGAGCCCCACCGCACACTTTCGACCC
CGGCAAGACATCTTCGCGTGGCGCGAGGAGACGGGGGGCGGTACCAGGTG
TTGCGTACCCCTTCGATAGGGGCAGGAACGGGAGTGGCAGCTCCGGCGGC
GGCAACGGCGGCAGCCGTAGCAGCGACGAGAGTGGCGACCTCGGCCAGAG
CACCGGCGGCGACACCGGCGGCAGCAGGAGCAGCGACGAGAGTGGTGGCT
TCCGCCAGAGCTCCGACGGCAGCCGCAGACGGCAGCGGTGGCTTGGGCCA
GAACCTCGTCGGCGGCAGCGGCGACAACGGCGGCGGTGTTAAAGGCGGCA
GCAGCGACGTCACCGGCAGCCGTGTTGGCGCTGGAAATCATGACAGTCGT
GGCGGCGAGGGAACGGCAACGGCGGCGATGGCAGCGGCGGCAGCAGCGGC
GGCGCCCTCGAGTCGACCGAGAACGGGGAGGACACGGTGACAGCGACGAC
CTCACCTTGTTACAGCCAAGTGGGATAACATGTGAAACGTTTATGACTTT
GTTCTGTTTTGTGAGC

protein sequence of EsuBft2310_2a-0001

>EsuBft2310_2 ID=EsuBft2310_2|Name=EsuBft2310_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=629bp
MKAFAEAGQKVVESMRSNSRENTTVVTTISANGVTWAPITIFKGQRLQPD
WFAERNCPRDARYAGIRTPDLNLRRVRGDQQDHRVLITRVVDNTRRCSKH
QMPGTKPRNDLLEVSPTRCVSAAAEERRVWRRVCVLAAAAAAARRGVWRR
LSATAAAITGSGRLHQGCRWTVRGEVFVGEKGGGAAAGSSAAYLPVKAPA
NAASLNVNTHSATRSPQRPATSRVAPAVVRQRDELDLMEGGYSSRRVAEE
HMHAWIASPSSLVAALAPGTQTDAAAMAAASVTGGTAAAAAAAASPVAAL
ASGIRTTAAAAVATSIGDGGDGSGDSSSGVPGRRVGVGHPDDRSGGAATA
AAASPVAALASGIRTTAAAAVATSIGDGGDGSGDSSSGVPGRRVGVGCPD
GRKGGGGGGTGDEVLEERDSQCAGVDVSNSSSSSSSSSSCSSDDSGGDGS
GDEGLDDIWTAAMGAGMRGWMKPGVEPHRTLSTPARHLRVARGDGGRYQV
LRTPSIGAGTGVAAPAAATAAAVAATRVATSARAPAATPAAAGAATRVVA
SARAPTAAADGSGGLGQNLVGGSGDNGGGVKGGSSDVTGSRVGAGNHDSR
GGEGTATAAMAAAAAAAAPSSRPRTGRTR

mRNA from alignment at Scaffold_630:502661..504981+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2310_2a-0001 ID=EsuBft2310_2a-0001|Name=EsuBft2310_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2321bp|location=Sequence derived from alignment at Scaffold_630:502661..504981+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCTTCGCGGAGGCAGGGCAGAAGGTGGTTGAGTCGATGCGGTC
CAACTCGCGAGAGAACACCACCGTGGTCACCACCATCAGCGCCAATGGTG
TCACGTGGGCGCCAATCACTATCTTCAAAGGACAGCGACTTCAGCCTGAC
TGGTTCGCCGAGAGGAACTGCCCGAGGGATGCGAGGTACGCCGGGATTCG
AACCCCTGACCTGAACCTGAGAAGGGTTCGAGGTGACCAACAAGACCACC
GGGTTCTTATTACCCGGGTGGTTGATAATACCCGCCGCTGTTCTAAGCAT
CAAATGCCTGGCACCAAACCACGAAACGATCTACTGGAAGTATCACCGAC
CAGGTGCGTTTCAGCAGCAGCGGAGGAACGGCGAGTTTGGCGGCGAGTCT
GTGTGTTGGCAGCAGCAGCAGCAGCAGCCAGGCGTGGTGTATGGCGGAGA
CTCTCAGCAACAGCCGCGGCAATAACAGGTAGCGGCCGGCTTCACCAGGG
GTGCAGGTGGACAGTGCGTGGTGAGGTGTTTGTTGGTGAGAAGGGGGGGG
GGGCTGCTGCCGGTTCGTCTGCGGCGTATTTGCCGGTAAAAGCCCCCGCC
AACGCAGCTTCTCTCAACGTAAACACACACTCCGCCACTCGCTCTCCCCA
GCGGCCCGCAACATCACGTGTAGCACCTGCAGTAGTGCGGCAACGCGATG
AGCTGGACCTCATGGAGGGCGGATACAGCAGTAGACGTGTAGCGGAGGAA
CACATGCATGCTTGGATCGCATCACGTTGTTGTAGTTTCGCCGTCCGCGG
AATCACAACAACCCAAGCATAGCGGCAGCAGCAGCAGCATCGTCCCTGGT
CGCCGCGTTGGCGCCGGGTACTCAGACAGACGCAGCGGCGATGGCGGCGG
CGTCGGTGACGGGGGGAACGGCAGCGGCAGCAGCAGCTGCGGCGTCCCCG
GTCGCCGCGTTGGCGTCGGGCATCCGGACGACCGCAGCGGCGGCGGTAGC
GACATCGATCGGTGACGGGGGGGACGGCAGCGGCGACAGCAGCAGCGGCG
TCCCCGGTCGCCGCGTTGGCGTCGGGCATCCGGACGACCGCAGCGGCGGC
GGTAGCGACATCGATCGGTGACGGGGGGGACGGCAGCGGCGACAGCAGCA
GCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGCATCCGGACGACCGCAGC
GGCGGCGGTAGCGACATCGATCGGTGACGGGGGGGACGGCAGCGGCGACA
GCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGCATCCGGACGAC
CGCAGCGGCGGCGGTAGCGACATCGATCGGTGACGGGGGGGACGGCAGCG
GCGACAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGTGTCCA
GACGGCCGCAAGGGCGGCGGCGGCGGCGGCACCGGTGACGAAGGTATGTG
ACGAAGAGTGGGAAGAAGTGGCTGGTGCGACAACGACGCCGTTGCCAGTC
CTAGAGGAGCGCGATAGCCAATGTGCTGGGGTGGACGTGAGCAACAGCAG
CAGCAGCAGCAGCAGTAGCAGCAGCTGCAGCAGCGACGACAGCGGCGGCG
ATGGGAGCGGCGATGAGGGGTTGGATGACATCTGGAGTGGAGCCCCGACG
CACCCTTTCGACACCGGGAAGGCTGAGGGGGACGTGAGCAGCAGCAGCAG
CTGCAGCAGCAGCAGCAGCAGCAGCGAGCAAAGCGGCGGCGATGGGAGCG
GGGATGAGGGGCTGGATGAAACCTGGAGTGGAGCCCCACCGCACACTTTC
GACCCCGGCAAGACATCTTCGCGTGGCGCGAGGAGACGGGGGGCGGTACC
AGGTGTTGCGTACCCCTTCGATAGGGGCAGGAACGGGAGTGGCAGCTCCG
GCGGCGGCAACGGCGGCAGCCGTAGCAGCGACGAGAGTGGCGACCTCGGC
CAGAGCACCGGCGGCGACACCGGCGGCAGCAGGAGCAGCGACGAGAGTGG
TGGCTTCCGCCAGAGCTCCGACGGCAGCCGCAGACGGCAGCGGTGGCTTG
GGCCAGAACCTCGTCGGCGGCAGCGGCGACAACGGCGGCGGTGTTAAAGG
CGGCAGCAGCGACGTCACCGGCAGCCGTGTTGGCGCTGGAAATCATGACA
GTCGTGGCGGCGAGGGAACGGCAACGGCGGCGATGGCAGCGGCGGCAGCA
GCGGCGGCGCCCTCGAGTCGACCGAGAACGGGGAGGACACGGTGACAGCG
ACGACCTCACCTTGTTACAGCCAAGTGGGATAACATGTGAAACGTTTATG
ACTTTGTTCTGTTTTGTGAGC

Coding sequence (CDS) from alignment at Scaffold_630:502661..504981+

>EsuBft2310_2a-0001 ID=EsuBft2310_2a-0001|Name=EsuBft2310_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1890bp|location=Sequence derived from alignment at Scaffold_630:502661..504981+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCTTCGCGGAGGCAGGGCAGAAGGTGGTTGAGTCGATGCGGTC
CAACTCGCGAGAGAACACCACCGTGGTCACCACCATCAGCGCCAATGGTG
TCACGTGGGCGCCAATCACTATCTTCAAAGGACAGCGACTTCAGCCTGAC
TGGTTCGCCGAGAGGAACTGCCCGAGGGATGCGAGGTACGCCGGGATTCG
AACCCCTGACCTGAACCTGAGAAGGGTTCGAGGTGACCAACAAGACCACC
GGGTTCTTATTACCCGGGTGGTTGATAATACCCGCCGCTGTTCTAAGCAT
CAAATGCCTGGCACCAAACCACGAAACGATCTACTGGAAGTATCACCGAC
CAGGTGCGTTTCAGCAGCAGCGGAGGAACGGCGAGTTTGGCGGCGAGTCT
GTGTGTTGGCAGCAGCAGCAGCAGCAGCCAGGCGTGGTGTATGGCGGAGA
CTCTCAGCAACAGCCGCGGCAATAACAGGTAGCGGCCGGCTTCACCAGGG
GTGCAGGTGGACAGTGCGTGGTGAGGTGTTTGTTGGTGAGAAGGGGGGGG
GGGCTGCTGCCGGTTCGTCTGCGGCGTATTTGCCGGTAAAAGCCCCCGCC
AACGCAGCTTCTCTCAACGTAAACACACACTCCGCCACTCGCTCTCCCCA
GCGGCCCGCAACATCACGTGTAGCACCTGCAGTAGTGCGGCAACGCGATG
AGCTGGACCTCATGGAGGGCGGATACAGCAGTAGACGTGTAGCGGAGGAA
CACATGCATGCTTGGATCGCATCACCATCGTCCCTGGTCGCCGCGTTGGC
GCCGGGTACTCAGACAGACGCAGCGGCGATGGCGGCGGCGTCGGTGACGG
GGGGAACGGCAGCGGCAGCAGCAGCTGCGGCGTCCCCGGTCGCCGCGTTG
GCGTCGGGCATCCGGACGACCGCAGCGGCGGCGGTAGCGACATCGATCGG
TGACGGGGGGGACGGCAGCGGCGACAGCAGCAGCGGCGTCCCCGGTCGCC
GCGTTGGCGTCGGGCATCCGGACGACCGCAGCGGCGGCGCGGCGACAGCA
GCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGCATCCGGACGACCGC
AGCGGCGGCGGTAGCGACATCGATCGGTGACGGGGGGGACGGCAGCGGCG
ACAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGTGTCCAGAC
GGCCGCAAGGGCGGCGGCGGCGGCGGCACCGGTGACGAAGTCCTAGAGGA
GCGCGATAGCCAATGTGCTGGGGTGGACGTGAGCAACAGCAGCAGCAGCA
GCAGCAGTAGCAGCAGCTGCAGCAGCGACGACAGCGGCGGCGATGGGAGC
GGCGATGAGGGGTTGGATGACATCTGGACGGCGGCGATGGGAGCGGGGAT
GAGGGGCTGGATGAAACCTGGAGTGGAGCCCCACCGCACACTTTCGACCC
CGGCAAGACATCTTCGCGTGGCGCGAGGAGACGGGGGGCGGTACCAGGTG
TTGCGTACCCCTTCGATAGGGGCAGGAACGGGAGTGGCAGCTCCGGCGGC
GGCAACGGCGGCAGCCGTAGCAGCGACGAGAGTGGCGACCTCGGCCAGAG
CACCGGCGGCGACACCGGCGGCAGCAGGAGCAGCGACGAGAGTGGTGGCT
TCCGCCAGAGCTCCGACGGCAGCCGCAGACGGCAGCGGTGGCTTGGGCCA
GAACCTCGTCGGCGGCAGCGGCGACAACGGCGGCGGTGTTAAAGGCGGCA
GCAGCGACGTCACCGGCAGCCGTGTTGGCGCTGGAAATCATGACAGTCGT
GGCGGCGAGGGAACGGCAACGGCGGCGATGGCAGCGGCGGCAGCAGCGGC
GGCGCCCTCGAGTCGACCGAGAACGGGGAGGACACGGTGA