EsuBft228_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft228_8a-0001
Unique NameEsuBft228_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:547602..552431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVI7
ProteomeIdEsuBft228_8
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon8
Max annot lvl2759|Eukaryota
Length96
Hectar predicted targeting categoryother localisation
Evalue6.8e-145
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Descriptioninterleukin-8 biosynthetic process
COG categoryS
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft228_8aEsuBft228_8aEctocarpus subulatus male Bft15bgeneScaffold_523 547602..552431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_8a-0001EsuBft228_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 547602..552431 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_8a-0001-exonagat-exon-13289Ectocarpus subulatus male Bft15bexonScaffold_523 547602..547631 -
EsuBft228_8a-0001-exonagat-exon-13292Ectocarpus subulatus male Bft15bexonScaffold_523 547717..547908 -
EsuBft228_8a-0001-exonagat-exon-13293Ectocarpus subulatus male Bft15bexonScaffold_523 549318..549470 -
EsuBft228_8a-0001-exonagat-exon-13291Ectocarpus subulatus male Bft15bexonScaffold_523 549735..549770 -
EsuBft228_8a-0001-exonagat-exon-13290Ectocarpus subulatus male Bft15bexonScaffold_523 549918..549968 -
EsuBft228_8a-0001-exonEsuBft228_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 551213..551524 -
EsuBft228_8a-0001-exonagat-exon-13294Ectocarpus subulatus male Bft15bexonScaffold_523 551972..552052 -
EsuBft228_8a-0001-exonagat-exon-13288Ectocarpus subulatus male Bft15bexonScaffold_523 552324..552431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_8a-0001-cdsEsuBft228_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 547602..547631 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft228_8a-0001 ID=EsuBft228_8a-0001|Name=EsuBft228_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=963bp|location=Sequence derived from alignment at Scaffold_523:547602..552431- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTGATATCCATGGCAAGACCGCGGCATTTCGTGAAGCCTCTCAG
CGACGCCCGCTTCGAGTCCCTCAAGGCATTGCTTGGAGTAAACGAGGAGA
TGCAGGAGATCAGAGAGACCTACGAAATCCTGGAGTACGAAAGGATGCAC
AACAAACTTGGTCTGAGGATATGGCAGCGCGCAACGGCGAGGGAGGCGTT
AAACCTTCCGAAGACGGCATCCGTAGGAGGTACAGCTGTTTCATCAGGAG
GAGCCTCGGACGCTGCCAAGCTTGTAATGAATGACGACGGCAGCTTGAGC
AATACCAACGCTGATCCAAAAAGTAAAACGACGTTGCCCAAGATTGGCAC
CGCCAGCAACGGCGGCAGTGTCCGTGATGTCAAGCAAAATCGAGGCCTTC
CAAGCCCCATGAACTCTGCAGAGCTGCCGTACCACTACGATGCGTATAGC
ATCTTCAGGGCGAAGGACTCCCACCTGAAGGAGACAATCCCGACAGTTGA
GGCGATGGAGATTGCTAGCGCGTTTCCGTGGCAGGTGCGAGGGCGAGTGT
GGGACGCCGGCTTCGTGCGAATGGCTCAAATATTAGAGGACTTTGGGCGA
GTCCAGGCCCTGATCATTGTGTTCAGCCGCATCGTAGACGTGGACAGATT
CAGCGAGGTGGTTCTCAGCTGCGTGATGAACGAGGAGAGGCGGGAACTGC
AGCATCGTTTGGGCATCCTGAACGTCCTGAATCCCGTCAGGATCCTCATT
AAGCTCGCGGTCGAGGAACCAGGAGCAAACTGGGACCACGAGACGTACAC
CCATGCCCGGGGGACTCCCAACATCCAAGGATGGCTTCTCCCCGAGAGCT
GGACCCGAGAGGACGAGGACATGGGGGGAGATGGGGGGCCCCGTAGATCT
GGTATCCTCTGCCTGCGCTACATCACTGATGCGGTGACGAACCCCAGACG
ACGGCCGAGATAA
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protein sequence of EsuBft228_8a-0001

>EsuBft228_8 ID=EsuBft228_8|Name=EsuBft228_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=320bp
MDVISMARPRHFVKPLSDARFESLKALLGVNEEMQEIRETYEILEYERMH
NKLGLRIWQRATAREALNLPKTASVGGTAVSSGGASDAAKLVMNDDGSLS
NTNADPKSKTTLPKIGTASNGGSVRDVKQNRGLPSPMNSAELPYHYDAYS
IFRAKDSHLKETIPTVEAMEIASAFPWQVRGRVWDAGFVRMAQILEDFGR
VQALIIVFSRIVDVDRFSEVVLSCVMNEERRELQHRLGILNVLNPVRILI
KLAVEEPGANWDHETYTHARGTPNIQGWLLPESWTREDEDMGGDGGPRRS
GILCLRYITDAVTNPRRRPR
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mRNA from alignment at Scaffold_523:547602..552431-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft228_8a-0001 ID=EsuBft228_8a-0001|Name=EsuBft228_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4830bp|location=Sequence derived from alignment at Scaffold_523:547602..552431- (Ectocarpus subulatus male Bft15b)
ATGGATGTGATATCCATGGCAAGACCGCGGCATTTCGTGAAGCCTCTCAG
CGACGCCCGCTTCGAGTCCCTCAAGGCATTGCTTGGAGTAAACGAGGAGA
TGCAGGAGGTTTGAAACGCGCGTTGTGCTTGATATTGAGCACCTTTCCCC
CAAGAGCCATTGTAGTTTCGGTGTTGGGCTTAGGTTTTGGCCTGACAGTG
GGCCCAATTGAAGTATCACCCCGTGAGAACTGACCCTCATCGCGTCGACT
TATTCTCCCACTTGAACATGCTCTGTCGATTTGTTGGTGTGGTGGTTCGG
TAGATCGCAACATTGTCCTGCCGTCGCACGACCCCACCCTCCGCCTCGGG
CCATTTCCGTCTGTTTCGTCGATGCTCAGATCAGAGAGACCTACGAAATC
CTGGAGTACGAAAGGATGCACAACAAACTTGGTCTGAGGATATGGCAGCG
CGCAACGGCGGTGAGTGGTGCTCGTCGCCTGCGGGGTTTGTTGGGGGGCG
ATAGCCACGCTTCCTTGCGGCCTTATTCTACTGCCGTGTCTCATGTCCCT
TCGTCGTTTGTGATGCATGTATCAACACAGCGCGGTGGTGCCCGCAGTCC
AGGTGGTCGCGTCAGACAGATGTGGTCGTTTATCAGTCTAGAGGTGATCG
TGCCGCCATGCAAGCCTCGCTTTCTATCATCTGAAACGTTCGGCACAAGT
TTACCAGGAGCGACACCACGAAGGTCTCGACGCCGGCTATGTGTGTTTCC
AAGGAGCGGGCTGCATCACTTCAATCCTTGCACATTTAATGTACTTACCT
TGGGACCCGCCGGTAGTCCTATCCGTGATCGCCAAACGCTCCAAAGCACG
CAGCATCTTTAGACCCAAGCCTCATGCAAGAAACTTTCGTTTGCGTAACC
ACTCCAGAGGGAGGCGTTAAACCTTCCGAAGACGGCATCCGTAGGAGGTA
CAGCTGTTTCATCAGGAGGAGCCTCGGACGCTGCCAAGCTTGTAATGAAT
GACGACGGCAGCTTGAGCAATACCAACGCTGATCCAAAAAGTAAAACGAC
GTTGCCCAAGATTGGCACCGCCAGCAACGGCGGCAGTGTCCGTGATGTCA
AGCAAAATCGAGGCCTTCCAAGCCCCATGAACTCTGCAGAGCTGCCGTAC
CACTACGATGCGTATAGCATCTTCAGGGCGAAGGACTCCCACCTGAAGGA
GACAATCCCGACAGTTGAGGTGCGTTGATCGAAAACGGCAACGAGGGCGG
TGGGGTGGACGCCTTCGCCAAGAAGGGGTTTGCCCCTCTGCACCAATGTA
GCATGGAATTGATGGCCGTGCCTGAAACGTGTTTGCTGCCAGCCTTGGGA
TGGAGGGGGAGCACTACTTTGGCAACTGGCTGAGGGGTAATAGTGGATAC
CTGGTGTATAGTTAACAGTAGAAAACCCAGGAAAAGCATCTGGAACGACG
TGCTGCCTCGAGTCCGGTGCGGGCAGACTCTCCAGCACGTAGTAGCGGAG
TACACCGAGTCGCCCAACCTCCAATGACCCGCCTGCATTGCCTTCCCCCT
TGCATTCCCCCACCACCGATATCGTCTCGAGTCTCACCCGTTACCACCAT
CAATGGCCTGATCTGTCTTCTTTTCTGCTATCTGCTATTTGCTTGCCTCC
CGCCTAACAGATCCCCGATTGTATAATCAGTTCCCACGCGATCGAACACT
GGCAGCAGTTCCACGCGTCGAGCCACTTCTTTCTCGACTATGTCGAAATT
GCGAAGCAGTCCCTAACCGCCCCCGGTGGTGGTGTTGACGACGCCGGCGG
CAGTAGTAGCGCCAATTTTTCGGCCACAGTGGGGGAGGGAAGGGGAGGAG
CGGAGGGCAGCGGCCGGGCGCCGCCACTAGGGACCTCGTCCTCGTCTGCG
GCGTTTGGTGCCACGGCCGGAGGGGGTCTAGGCGGGGGTGCTGGTGGGCC
GCACGGAGGGGGAGACGTGAGTAGTGAGTCGCGAAAAAAAACTTTCTTTT
CGTCGCTTCTCAGCTTCTGTCAGCGCTCCTATCGGGACCACGTGCGTCTT
CGGCTGCCAGTTGCGCTCCAAAATCAAGCTACGTTGATCAATCCTGTCAA
GTGTCTCGTCCGCACCATGCCAAACGAGCAGAGGATTCGTGGGCATTTCA
GGCACTACGGCGCGTTCCGATGAAGACAGCGCGGACTTCATGGACATATC
GACCCACTTCAGATCTCGCCCCCTTTCCGCCGCTGTTAACTTGTACATGT
AGTGCTCCGACGTCGGTAGTGAACCCCGGAACCTGATCGAGAAGTACCCA
TCCCGCCCCGTGCCTGACGTCTGCACAGCGGAGCAACGCCGCCGGGGCAG
GCACAACTGCGGTAGGTGCCTCGATCGCCCCGACGCGGATTTACCGATGG
GTGTTCCATCGCCTTCTCATGCTTCAGACCGTCGCAGCCGCGGCGTGGTA
CACATGTCAGCAGGCGATGGAGATTGCTAGCGCGTTTCCGTGGCAGGTGC
GAGGGCGAGTGTGGGTACGCTTGTGTGATTACAAAGCTGGAGACAAACTT
AAGACCCCTCTGTAGAAACATATGTAATGCTGTGTGATGACCGTTCTTCG
CTCCAAGTATGTTTGGTCTGAAACGGGGATCAAATAACGAAGAGCTATGG
AATTAATGTAGGACGCCGGCTTCGTGCGAATGGCTCAAATATTAGAGGTA
TGTAGCTTCTGCGGGGGGTTGGTTCCCGAGCCTTGCTTCTATAACCCCAA
CGTGTTTCACTAGCAGGGCACCCCCCATCGATTGACACGCCAATGGTCAG
TGCTGCACCAAGACGTGGCGGAGGTCTTTCGCAGCCTAGATTTGACATGT
AGCAAATGACATAGCGAAACAGCTCTTGCCCTTGCTGCCCCCAAAGTCCC
TGCGATTCTCAGTGTTTGCTATGTGTTCCGTGCCATACGTTCGGTGCGAC
TCCCTCCGCAGGACTTTGGGCGAGTCCAGGCCCTGATCATTGTGTTCAGC
CGCATCGTAGACGTGGACAGATTCAGCGAGGTGGTTCTCAGCTGCGTGAT
GAACGAGGAGAGGCGGGAACTGCAGCATCGTTTGGGCATCCTGAACGTCC
TGAATCCCGTCAGGGTAAGCTGAGCTGACGTGACTGGCCATAACCTTGTC
GTTGAGCATCAAGCTACGGAACCGTGTCATGGGGTATGAGTCACTCAATT
GAACTGGCACAAGACTAGTGTATCCGTTTTCAAAACTCAACTGAGACGAT
GGCCACCAAAACATGTGCTATAGTGTGGTTTGTTTTCTGGGGCGGTATTT
GCCTGTGATTGGGTGGGAACCCACACAAATAGCGGGAATTGGCATAAGGT
GTAACCCGATATACCACGACATTGCTTGGGGTCTAGAGAACCCTTGCCGC
CGTCAACGGTAACGCTGTTACCGTTGGGAATCCATCTGACACCTAGCACG
AATCACCACAGTGTCTTGAACCCTGTTGGAAAACGCGTACGAGCCCAACG
AAAACCTCCCTTGAAATTGGAATATGAAGCACACAACAATAGTTCTGGGC
CCCAAGTGGCGACTGACGCTACAATGATCTCCTTGCCCCTGGACTTCACC
GCAACGCGCTCCTGCGCTCTTAGGCATGCCTACATAGCCTCCTTGCACTC
AGGTCGGGCATGGGGCTGTTACATGTTCCCCAGCAACGTACATTTCAGAG
CATGGTGCATTTTACCCGCTTCTTCTTTCTGATACATACCATATTTCGGC
CCCCGCGGGGCTTCCACGAAATTCGGACAACAAACAACCAGCCGGACGGA
CCCTATGTGCTGGATCTCAAGTGCTGGGAGGAACGAGAGTGGGCAAAGGT
CGGTACAGTGCGTCGAATGTTTAGATCCCAACGGTTCTCTGCACCGGCGG
CTGTTGGTATCGGCCTCTCTTGCTGTGTGTCGAAATCGAGTAGGGTTTCG
ATCAGGCTTGACTCATTGGCAGCGCGCGGGAACCAGCCACATGGAGTAAA
CGTTTTTCTCCATGCGAGTTCGGTTCATTTCCATGCACTTGACATTCACA
TAGAACATGAAAAATCGATTGGCGAGGGCGTGGGGCAGCCACTGGTCTCT
TTCTCGGTGCATGGAAACGTTTGTCGTAGTGGGATGCCATGATTTTCCCC
TTCGAGAAAAGTAATCACCACAAAACCAACACAACCTCCATTTTTTCGGT
TCTTCAAGCTTGCCACGATCATTTTGGGCTCATGAAACCCTAGGCGGGGG
TTCGGGGTGTCTGACGAGAGGGAAAACGCTTGATTGAGGTTGTCTCTAGT
TCATGCCAACGCCAAACAACCTGAATGTGTGGGAGGGACCCCCTAAATAA
TGTTGTGATGGCAACTGCCCCAAGCTACGGTCACATAGGAGACGTGCTTG
GCAAAGCGTGCACGACATTCTCGTCTGGATCAGTGCTCTTACATCAGCAA
TATTGCAAGCACGAAACCTTCTCCGGCTGTACAACGAGGTTGTTTCGTAC
ACTTCAACATGGACCGTTGGCAGATCCTCATTAAGCTCGCGGTCGAGGAA
CCAGGAGCAAACTGGGACCACGAGACGTACACCCATGCCCGGGGGACTCC
CAACATCCAAGGATGGCTTCTCCCCGAGAGCTGGACCCGAGAGGACGAGG
ACATGGGGGGAGATGGGGGGCCCCGTAGATCTGGTATCCTCTGCCTGCGC
TACATCACTGATGCGGTGCGTGGGGAGAGATACCGAACTGCTTGCTCACT
AATTGGTAGGGAGAACAGCGATACGCTACGTGTTGTTTGAGAACACACAG
GTGACGAACCCCAGACGACGGCCGAGATAA
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Coding sequence (CDS) from alignment at Scaffold_523:547602..552431-

>EsuBft228_8a-0001 ID=EsuBft228_8a-0001|Name=EsuBft228_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=963bp|location=Sequence derived from alignment at Scaffold_523:547602..552431- (Ectocarpus subulatus male Bft15b)
ATGGATGTGATATCCATGGCAAGACCGCGGCATTTCGTGAAGCCTCTCAG
CGACGCCCGCTTCGAGTCCCTCAAGGCATTGCTTGGAGTAAACGAGGAGA
TGCAGGAGATCAGAGAGACCTACGAAATCCTGGAGTACGAAAGGATGCAC
AACAAACTTGGTCTGAGGATATGGCAGCGCGCAACGGCGAGGGAGGCGTT
AAACCTTCCGAAGACGGCATCCGTAGGAGGTACAGCTGTTTCATCAGGAG
GAGCCTCGGACGCTGCCAAGCTTGTAATGAATGACGACGGCAGCTTGAGC
AATACCAACGCTGATCCAAAAAGTAAAACGACGTTGCCCAAGATTGGCAC
CGCCAGCAACGGCGGCAGTGTCCGTGATGTCAAGCAAAATCGAGGCCTTC
CAAGCCCCATGAACTCTGCAGAGCTGCCGTACCACTACGATGCGTATAGC
ATCTTCAGGGCGAAGGACTCCCACCTGAAGGAGACAATCCCGACAGTTGA
GGCGATGGAGATTGCTAGCGCGTTTCCGTGGCAGGTGCGAGGGCGAGTGT
GGGACGCCGGCTTCGTGCGAATGGCTCAAATATTAGAGGACTTTGGGCGA
GTCCAGGCCCTGATCATTGTGTTCAGCCGCATCGTAGACGTGGACAGATT
CAGCGAGGTGGTTCTCAGCTGCGTGATGAACGAGGAGAGGCGGGAACTGC
AGCATCGTTTGGGCATCCTGAACGTCCTGAATCCCGTCAGGATCCTCATT
AAGCTCGCGGTCGAGGAACCAGGAGCAAACTGGGACCACGAGACGTACAC
CCATGCCCGGGGGACTCCCAACATCCAAGGATGGCTTCTCCCCGAGAGCT
GGACCCGAGAGGACGAGGACATGGGGGGAGATGGGGGGCCCCGTAGATCT
GGTATCCTCTGCCTGCGCTACATCACTGATGCGGTGACGAACCCCAGACG
ACGGCCGAGATAA
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