EsuBft228_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft228_3a-0001
Unique Name	EsuBft228_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:483883..484874 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	67593.Physo132654
ProteomeId	EsuBft228_3
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	4776\|Peronosporales
Length	885
Evalue	2.95e-35
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QHJF@4776\|Peronosporales
Date last modified	2016-06-15
Date creation	2016-06-15
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft228_3a	EsuBft228_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 483883..484874 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_3a-0001-exon	EsuBft228_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 483883..484232 +
EsuBft228_3a-0001-exon	agat-exon-13260	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 484340..484874 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_3a-0001-cds	EsuBft228_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 483883..484232 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_3a-0001	EsuBft228_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 483883..484874 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:483883..484874+
coding sequence from alignment at Scaffold_523:483883..484874+

spliced messenger RNA

>EsuBft228_3a-0001 ID=EsuBft228_3a-0001|Name=EsuBft228_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=885bp|location=Sequence derived from alignment at Scaffold_523:483883..484874+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCCCGTGAAGAACCTTGGAGAGTTGCGGTGGTTCTCCGCGTGCTT
TTACGAGAGAGACGTAGAGAGAAGGCTGTTGATGATTTCGCAGCAGAGGT
TTGCCGAAGAGTTGGCTGCAGAGTACAGCATTGAGTGGGGTAGGAGCGTG
CCCTTGCCTGTGAGCGTTAAGCTCACCGACTTTGACGAGAACGAAGCGTG
CGCTGATGTCCCTTTTCGCGAGTCGGTAGGATCCCTGATGTGGTTGGCCA
CTCAAACAAGGCCGGACATCGCGAACGCAGTACCAGCAGTAGCGCGGTAT
GGTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGG
ACCGAAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGGTGTGTG
ACTTGNCAGCAGTAGCGCGGTATGGTGCATCTCCCAAGATGGTGCACTGG
AAGGCAGCACTCGGTATTTTAGGGTACTTACGGAGGACGAGTTGGATGGG
GATTACATTTGAGAGGGGCGTGGTGACTGGGATGAGCACAAGGGTGTTTG
TGGATGCCGACTATGCAAGCAAGGCGGCAGACCGAAGATCGGTGTCAGGA
GGGCTAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTTTCGAGGATGCA
GAAGTGCTTTTCGCTTTCCACCACGGAATCAGAGTATGTGGCAATTGCCG
ATGTCTCGAAGGAAGTGTTGTTCCTGAGGCAGGTGTGTCGTTTTATGTTG
CCAGATGCAAGTATGCCGTGCATCCCGGTGTTCGAGGATAATCAGGGAGC
GATTAAGATTGGGCACAACCCGATCACAAACTCCAACTCGAAGCACATCG
ATGTACGGCATCACTTTATCAGGGAGCTGGTATAG

protein sequence of EsuBft228_3a-0001

>EsuBft228_3 ID=EsuBft228_3|Name=EsuBft228_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=294bp
MVPVKNLGELRWFSACFYERDVERRLLMISQQRFAEELAAEYSIEWGRSV
PLPVSVKLTDFDENEACADVPFRESVGSLMWLATQTRPDIANAVPAVARY
GASPKMVHWKAALGILGPKIGVRRASDVWGRVCDLXAVARYGASPKMVHW
KAALGILGYLRRTSWMGITFERGVVTGMSTRVFVDADYASKAADRRSVSG
GLVMCGGGCVTWFSRMQKCFSLSTTESEYVAIADVSKEVLFLRQVCRFML
PDASMPCIPVFEDNQGAIKIGHNPITNSNSKHIDVRHHFIRELV

mRNA from alignment at Scaffold_523:483883..484874+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft228_3a-0001 ID=EsuBft228_3a-0001|Name=EsuBft228_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=992bp|location=Sequence derived from alignment at Scaffold_523:483883..484874+ (Ectocarpus subulatus male Bft15b)
ATGGTCCCCGTGAAGAACCTTGGAGAGTTGCGGTGGTTCTCCGCGTGCTT
TTACGAGAGAGACGTAGAGAGAAGGCTGTTGATGATTTCGCAGCAGAGGT
TTGCCGAAGAGTTGGCTGCAGAGTACAGCATTGAGTGGGGTAGGAGCGTG
CCCTTGCCTGTGAGCGTTAAGCTCACCGACTTTGACGAGAACGAAGCGTG
CGCTGATGTCCCTTTTCGCGAGTCGGTAGGATCCCTGATGTGGTTGGCCA
CTCAAACAAGGCCGGACATCGCGAACGCAGTACCAGCAGTAGCGCGGTAT
GGTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGG
GTACTTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGCGTGG
TGACTGGGATGAGCACAAGGGTGTTTGTGGATGCCGACTATGCAAGCAAG
GCGGCAGACCGAAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGG
GTGTGTGACTTGNCAGCAGTAGCGCGGTATGGTGCATCTCCCAAGATGGT
GCACTGGAAGGCAGCACTCGGTATTTTAGGGTACTTACGGAGGACGAGTT
GGATGGGGATTACATTTGAGAGGGGCGTGGTGACTGGGATGAGCACAAGG
GTGTTTGTGGATGCCGACTATGCAAGCAAGGCGGCAGACCGAAGATCGGT
GTCAGGAGGGCTAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTTTCGA
GGATGCAGAAGTGCTTTTCGCTTTCCACCACGGAATCAGAGTATGTGGCA
ATTGCCGATGTCTCGAAGGAAGTGTTGTTCCTGAGGCAGGTGTGTCGTTT
TATGTTGCCAGATGCAAGTATGCCGTGCATCCCGGTGTTCGAGGATAATC
AGGGAGCGATTAAGATTGGGCACAACCCGATCACAAACTCCAACTCGAAG
CACATCGATGTACGGCATCACTTTATCAGGGAGCTGGTATAG

Coding sequence (CDS) from alignment at Scaffold_523:483883..484874+

>EsuBft228_3a-0001 ID=EsuBft228_3a-0001|Name=EsuBft228_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=885bp|location=Sequence derived from alignment at Scaffold_523:483883..484874+ (Ectocarpus subulatus male Bft15b)
ATGGTCCCCGTGAAGAACCTTGGAGAGTTGCGGTGGTTCTCCGCGTGCTT
TTACGAGAGAGACGTAGAGAGAAGGCTGTTGATGATTTCGCAGCAGAGGT
TTGCCGAAGAGTTGGCTGCAGAGTACAGCATTGAGTGGGGTAGGAGCGTG
CCCTTGCCTGTGAGCGTTAAGCTCACCGACTTTGACGAGAACGAAGCGTG
CGCTGATGTCCCTTTTCGCGAGTCGGTAGGATCCCTGATGTGGTTGGCCA
CTCAAACAAGGCCGGACATCGCGAACGCAGTACCAGCAGTAGCGCGGTAT
GGTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGG
ACCGAAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGGTGTGTG
ACTTGNCAGCAGTAGCGCGGTATGGTGCATCTCCCAAGATGGTGCACTGG
AAGGCAGCACTCGGTATTTTAGGGTACTTACGGAGGACGAGTTGGATGGG
GATTACATTTGAGAGGGGCGTGGTGACTGGGATGAGCACAAGGGTGTTTG
TGGATGCCGACTATGCAAGCAAGGCGGCAGACCGAAGATCGGTGTCAGGA
GGGCTAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTTTCGAGGATGCA
GAAGTGCTTTTCGCTTTCCACCACGGAATCAGAGTATGTGGCAATTGCCG
ATGTCTCGAAGGAAGTGTTGTTCCTGAGGCAGGTGTGTCGTTTTATGTTG
CCAGATGCAAGTATGCCGTGCATCCCGGTGTTCGAGGATAATCAGGGAGC
GATTAAGATTGGGCACAACCCGATCACAAACTCCAACTCGAAGCACATCG
ATGTACGGCATCACTTTATCAGGGAGCTGGTATAG