EsuBft228_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft228_2a-0001
Unique NameEsuBft228_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:481709..483819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog3641.EOY17849
ProteomeIdEsuBft228_2
Protein domainsIPR001584
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl35493|Streptophyta
Length183
Evalue0.000486
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
Date last modified2016-06-15
Date creation2016-06-15
DescriptionMitochondrial protein
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft228_2aEsuBft228_2aEctocarpus subulatus male Bft15bgeneScaffold_523 481709..483819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_2a-0001-exonagat-exon-13259Ectocarpus subulatus male Bft15bexonScaffold_523 481709..481914 +
EsuBft228_2a-0001-exonEsuBft228_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 482188..483819 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_2a-0001-exonagat-five_prime_utr-5899Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 481709..481796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_2a-0001-cdsEsuBft228_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 481797..481914 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_2a-0001-exonagat-three_prime_utr-9154Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 482979..483819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft228_2a-0001EsuBft228_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 481797..482978 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft228_2a-0001 ID=EsuBft228_2a-0001|Name=EsuBft228_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1838bp|location=Sequence derived from alignment at Scaffold_523:481709..483819+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTTCCCCATTTTCGGTAGGAAAATCCACTCCCACCATTGACAATAATT
TGCTCCATGCCTCCACCGGCCATGTCAACGAATTCTTGATGCGTGAAACG
GCCAAGCAGCAGGGCGTACGACTTGGGGGGGAGATGCAGCCGTGTGTGGG
CTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGCGACGTGGCACGT
ACGGCGGAGCGCCGGCGCCGGTGCCGNACGTGGCACGTACGGCGGTACCG
TTCGGCAAAGTCCACATCACCCTCACGGGCCCGTTCTCTGACGCGCTGGA
CAGCTCCCGGTACCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAAC
GGGGGTACGGGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGG
TTTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGA
CAACGGTGGCGAGTTCACCGGCTCCGCGTTCACGTCGACAACGTCGTGTG
GGTCAACCGCCGGGCAGGAGCGCCGGCGCCGGTGCCGGGCATCGGGAAGG
GTTCTTCGGTCACCGCTGCGCCCTCGCCGGCCGCCGCCGTACCTGCAGCG
CCGCCCCGCCGCCGCCCCGGACGTACACGTACACCCCGCCTGCACCAGAG
ACCACCGCACCGCCGCGGCCCGCTTCCCCGCCGCTCATCACAGGATCCTC
AGCCCCGCGCCGATCTCCGTCGTCCCATCATCAGCCCCACCGTCAAACGC
AGCCATGCCGCCCCGTTCGCCCCCGGGCCTGCCGCCGCCGCCGCCGCAGC
CCGCCATCGCCGCCGCCCCCGCTCCTCCGCACCCGCCGCTTTCGAAACGA
GCCGTCAAGGAGCTGGGACGAGAGGATACGAGGGTTCACGGCCGCACGCG
CGGCGATGGAGTGCGGTTCATCGATGAGCAACAACAACCGCCGTCGCCAC
CCGTGGCGGCACCGCTCTCCACCACCGCCTTGGGCTGTTGGACATGATGG
ACAAGGCCACCCTCATCTCGTCGCTCGCCACCCGGGAGGCCGTGGANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGGGGGGGGGGGGAGACCGCAGATGTTCGCA
ACGATGTTCGCCACTTGCGAGGTGTGGACGCCGCTCTTCGCGCTGAGCGC
CCGCCCGACAAGATGCCAGACCTCCCTCACTGCCTCGCCAGCGACCTCCG
CGTGCCAAAAACGTTCAAAGAGGCCATGCGGTCTAAACATTCAGAGTTGT
GGGATGATTCAGTCGGTGAGAGTTTTTCGGTTTGTTGGATGCAGGAACTT
TTAGTCCGGTGTAGCAACCAGTAGAGAACGCCATCAATGCTAAGTGGGTC
TTTTACTGAAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCAAG
ACTTGTAGCGCGGGGGGCATGCAGAGGGCTTCGATTGATTCTGGAGAACT
GTTTGCACCCACCGTTTCAGTGTCTAGTGTGCGCTTGTTAGCAGCATTAG
CATGTGAGCAGAATCCTGACTTGTGCCATTGCGATATTAAGCAGGATTTT
GTGCAGTCTGAGCTTGGTGAGGATGTTTTCATGCGCTTACCGCAGGGGTG
TGGTAGGTTATCTGGCCTGATCGTGAAGCTGTGCAAGAGCCTGTATGGTT
TGAAGCAGGCGTCAAGACATTGGCATGCGCACCTGACGAAGTGTTGATAC
TTTTAATTTTTTTGCAGTGTCTGGCAGATACATGTGTTTTTCGATTGGTG
GAGGAGGGGCGTGTGATTATGATCATCGTGGTTCACGT
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protein sequence of EsuBft228_2a-0001

>EsuBft228_2 ID=EsuBft228_2|Name=EsuBft228_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MRETAKQQGVRLGGEMQPCVGCVEAKGRRAPVPRRGTYGGAPAPVPXVAR
TAVPFGKVHITLTGPFSDALDSSRYLIMFVDSASRWQRGYGMRAKSDTLK
FVQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSTTSCGSTAGQERRRRCR
ASGRVLRSPLRPRRPPPYLQRRPAAAPDVHVHPACTRDHRTAAARFPAAH
HRILSPAPISVVPSSAPPSNAAMPPRSPPGLPPPPPQPAIAAAPAPPHPP
LSKRAVKELGREDTRVHGRTRGDGVRFIDEQQQPPSPPVAAPLSTTALGC
WT
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mRNA from alignment at Scaffold_523:481709..483819+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft228_2a-0001 ID=EsuBft228_2a-0001|Name=EsuBft228_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2111bp|location=Sequence derived from alignment at Scaffold_523:481709..483819+ (Ectocarpus subulatus male Bft15b)
TGCTTCCCCATTTTCGGTAGGAAAATCCACTCCCACCATTGACAATAATT
TGCTCCATGCCTCCACCGGCCATGTCAACGAATTCTTGATGCGTGAAACG
GCCAAGCAGCAGGGCGTACGACTTGGGGGGGAGATGCAGCCGTGTGTGGG
CTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGCGACGTGGCACGT
ACGGCGGTACCGTTCGGCAAAGTCCACATCACCCTCACGGGCCCGTTCTC
TGACGCGCTGGACAGCTCCCGGTACCTGATCATGTTCGTGGACAGCGCAT
CGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCGACACCCTCAAG
TTCGTGCAGCGGTTCCTCGCCGACATGAACGGCATGGGCACTCCGGGGTG
TTCCCGCATGGACAACGGTGGCGAGTTCACCGGCTCCGCGTTCACGTCGA
CAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGCGCCGGTGCCGN
ACGTGGCACGTACGGCGGTACCGTTCGGCAAAGTCCACATCACCCTCACG
GGCCCGTTCTCTGACGCGCTGGACAGCTCCCGGTACCTGATCATGTTCGT
GGACAGCGCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCG
ACACCCTGAAGTTCGTGCAGCGGTTTCTCGCCGACATGAACGGCATGGGC
ACTCCGGGGTGTTTCCGCATGGACAACGGTGGCGAGTTCACCGGCTCCGC
GTTCACGTCGACAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGC
GCCGGTGCCGGGCATCGGGAAGGGTTCTTCGGTCACCGCTGCGCCCTCGC
CGGCCGCCGCCGTACCTGCAGCGCCGCCCCGCCGCCGCCCCGGACGTACA
CGTACACCCCGCCTGCACCAGAGACCACCGCACCGCCGCGGCCCGCTTCC
CCGCCGCTCATCACAGGATCCTCAGCCCCGCGCCGATCTCCGTCGTCCCA
TCATCAGCCCCACCGTCAAACGCAGCCATGCCGCCCCGTTCGCCCCCGGG
CCTGCCGCCGCCGCCGCCGCAGCCCGCCATCGCCGCCGCCCCCGCTCCTC
CGCACCCGCCGCTTTCGAAACGAGCCGTCAAGGAGCTGGGACGAGAGGAT
ACGAGGGTTCACGGCCGCACGCGCGGCGATGGAGTGCGGTTCATCGATGA
GCAACAACAACCGCCGTCGCCACCCGTGGCGGCACCGCTCTCCACCACCG
CCTTGGGCTGTTGGACATGATGGACAAGGCCACCCTCATCTCGTCGCTCG
CCACCCGGGAGGCCGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGGGG
GGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCACTTGCGAGGTGTGG
ACGCCGCTCTTCGCGCTGAGCGCCCGCCCGACAAGATGCCAGACCTCCCT
CACTGCCTCGCCAGCGACCTCCGCGTGCCAAAAACGTTCAAAGAGGCCAT
GCGGTCTAAACATTCAGAGTTGTGGGATGATTCAGTCGGTGAGAGTTTTT
CGGTTTGTTGGATGCAGGAACTTTTAGTCCGGTGTAGCAACCAGTAGAGA
ACGCCATCAATGCTAAGTGGGTCTTTTACTGAAAGGCAGACGAGTACGGA
TGGCCGACGAAATTCAAGGCAAGACTTGTAGCGCGGGGGGCATGCAGAGG
GCTTCGATTGATTCTGGAGAACTGTTTGCACCCACCGTTTCAGTGTCTAG
TGTGCGCTTGTTAGCAGCATTAGCATGTGAGCAGAATCCTGACTTGTGCC
ATTGCGATATTAAGCAGGATTTTGTGCAGTCTGAGCTTGGTGAGGATGTT
TTCATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGGCCTGATCGTGAA
GCTGTGCAAGAGCCTGTATGGTTTGAAGCAGGCGTCAAGACATTGGCATG
CGCACCTGACGAAGTGTTGATACTTTTAATTTTTTTGCAGTGTCTGGCAG
ATACATGTGTTTTTCGATTGGTGGAGGAGGGGCGTGTGATTATGATCATC
GTGGTTCACGT
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Coding sequence (CDS) from alignment at Scaffold_523:481709..483819+

>EsuBft228_2a-0001 ID=EsuBft228_2a-0001|Name=EsuBft228_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=909bp|location=Sequence derived from alignment at Scaffold_523:481709..483819+ (Ectocarpus subulatus male Bft15b)
ATGCGTGAAACGGCCAAGCAGCAGGGCGTACGACTTGGGGGGGAGATGCA
GCCGTGTGTGGGCTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGC
GACGTGGCACGTACGGCGGAGCGCCGGCGCCGGTGCCGNACGTGGCACGT
ACGGCGGTACCGTTCGGCAAAGTCCACATCACCCTCACGGGCCCGTTCTC
TGACGCGCTGGACAGCTCCCGGTACCTGATCATGTTCGTGGACAGCGCAT
CGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCGACACCCTGAAG
TTCGTGCAGCGGTTTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTG
TTTCCGCATGGACAACGGTGGCGAGTTCACCGGCTCCGCGTTCACGTCGA
CAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGCGCCGGTGCCGG
GCATCGGGAAGGGTTCTTCGGTCACCGCTGCGCCCTCGCCGGCCGCCGCC
GTACCTGCAGCGCCGCCCCGCCGCCGCCCCGGACGTACACGTACACCCCG
CCTGCACCAGAGACCACCGCACCGCCGCGGCCCGCTTCCCCGCCGCTCAT
CACAGGATCCTCAGCCCCGCGCCGATCTCCGTCGTCCCATCATCAGCCCC
ACCGTCAAACGCAGCCATGCCGCCCCGTTCGCCCCCGGGCCTGCCGCCGC
CGCCGCCGCAGCCCGCCATCGCCGCCGCCCCCGCTCCTCCGCACCCGCCG
CTTTCGAAACGAGCCGTCAAGGAGCTGGGACGAGAGGATACGAGGGTTCA
CGGCCGCACGCGCGGCGATGGAGTGCGGTTCATCGATGAGCAACAACAAC
CGCCGTCGCCACCCGTGGCGGCACCGCTCTCCACCACCGCCTTGGGCTGT
TGGACATGA
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