EsuBft228_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft228_16a-0001
Unique Name	EsuBft228_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:630831..634501 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	90675.XP_010513381.1
ProteomeId	EsuBft228_16
Protein domains	SSF56672
Protein domains	PTHR10178
Protein domains	G3DSA
Owner	apollo_admin@sb-roscoff.fr
Note	transposon ty3-i gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-i pe:3 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	3612
Hectar predicted targeting category	other localisation
Evalue	1.93e-32
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37RRH@33090\|Viridiplantae,3G8MV@35493\|Streptophyta,3HVTZ@3699\|Brassicales
Date last modified	2016-06-15
Date creation	2016-06-15
Description	DNA RNA polymerases superfamily protein
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft228_16a	EsuBft228_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 630831..634501 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_16a-0001-exon	agat-exon-13323	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 630831..633232 +
EsuBft228_16a-0001-exon	EsuBft228_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 633292..634501 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_16a-0001-cds	EsuBft228_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 630831..631328 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_16a-0001-exon	agat-three_prime_utr-9150	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 631329..633232 +
EsuBft228_16a-0001-exon	agat-three_prime_utr-9151	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 633292..634501 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_16a-0001	EsuBft228_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 630831..631328 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:630831..634501+
coding sequence from alignment at Scaffold_523:630831..634501+

spliced messenger RNA

>EsuBft228_16a-0001 ID=EsuBft228_16a-0001|Name=EsuBft228_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3612bp|location=Sequence derived from alignment at Scaffold_523:630831..634501+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAGGGCTGAGATGCAACAGTTGCTGGATCGTGGTATCATTCGGCC
TTCCATGTCACCCTGGGCAGCTCAATGCTTGTGTGTTAAGAAGAAAGACG
GAACTATGCCACTGTGTATTGACTGGAGGGTGTTGAAAAAGCTTCTGGTA
TCCGACAGTGGCGGGCTAGGTGGTATGCAAACCATATTCGATGGACTGAA
AGGCAAGCGGTACTTCACTCAGATCGATCTAGCGTCAGGCTTTCATCAAT
TTGAAATCGCCGAGAAGGATCGCTATCAAACAGCCTTCCGTGACGCAGAT
GGCATGTTGTACGAGTTTACACGTGCGGGTTTCGGGCTGACAGTTTTACC
TTCCGCGTTCACGCTTCGAGTGAAGTCTGCTTTAGGAATGATCGATGGCG
TGTTTAGCTGGTTGGACGACATACTCGTCGCAAACGAAACGTGGGAAGAA
CACCTTGAACAACATATTCGCCTGATTGAGAGCGTAGCATCTGATTGAGA
GCGAGATTGCGCGATACGCTGTAGCCGGACTACCACTGAGAGGTGGAGCT
TGCTGTGTAGCTTGAATTGAAGGGCTAGCCCGTAGCTTCAAGCCGCTACC
CTGGTCATCCTGTGGGAGTCTCTCGTTGTGGAGCTACAGCGGGGAGCAGA
AGCTACAGCAGAGCCCACCGCCCGACGCGATACCGCCCTGAAACAGTTTG
AGCAGAAATATTATATCTGGGCAAATCTAGCAACTNGAGCAGAAATAGCC
AATCTGGGCAAATCTAGCAACTTGTCTAGCTCCTCGCTGCAGCATCCGAT
GACGATGACACGCATATGCTCGCGAAGCTGCTGATGAGACCTTCAATTTG
CACCGCTTCTTGGAATAGCCCGTCCCCTACTTGCCAAGAAATGGCAAGAG
GCGTCTGGACCCAAAATTTCAATTTTTTTGGCTCTCGCTCTCAATCAGAT
GCTACGCTCTCAATCAGGCGAATATGTTGTTCTTGCTGCATTGGTGCTCG
TTCTAACACGCCTTCGTGCTGCTGGACTGTCCGTTGACTTTTCGAAATGC
ATTTTCGGGGCTTCGTCCCAAGGGTTTCTCGGAATGATAATTGATGCTAC
CGGCATGCACCCAGCCCCGTCGAAACTCGAAGCGATTGCCAACATGCCCC
GGCCACGAACGGTCGAAGACCTGCGCACGTTTCTAGGCTTGACGGGATAT
CCCCGACAATTTGTCCCTCAATACAGTTTAGTTTCGGCTCCCCTACAGAC
AGATGTCCTCCGCAATAAGGACTTTGCGTCTAAGCGCGCACGTAAGCTCC
CAATTCAGTGGGGGGAAGCGGAGGAGCACGCCTTCCACCAACTAAGACAG
TGCCTGGCTTCCCCTACCGTGTTAGCTTTCCTGATCCTAATGCATCTTTT
GAGCTGCATTCAGATGCTCGCTCAGTGGGCGCAGGTGCTACCCTGCTGCA
GACCATCGACGATACACCCAGGATCATCGCTTTCGCTAGCCACAAGTTCT
CTCGCACCGACGCTCGACGAGGACCCACGGAACGGGAGTGCATGGGAGTA
TTGTGGGGCGTTGATCGTTTCAAGCCGTACCTAGCTGGTACTCAGTTCAA
AGTCGTGACGGATTGCTCTGCGCTCACGTGGTTGTTTCGCAGTAGAGAAC
TTGTCCCAAGTTGCATAGGTGGGCACTTCGCCTCATGGAGTACGACATAG
TATTAGAATGGAGGGCAGGAGTGCACACGTGTTGCCAGATGCTCTGTCCC
GTCTCCCCGTGGCCAGTAGCCCCTCCGCAGATGTAGACGACTCTTTTCCT
GACGATTTCACGTTCCCGAATTCCTCCACTTGTGTCGGCCCGCAAGGCCC
TGTGCTTGATGGTGTGCGTCTCGCGGACCTCACGACCGACGACGAATCCG
AGCCCGTAATTACCGATGGTGAGATTGATCCCGCGGTCATAGCACCACTA
TTGGCTGACTTCCCGTCGCTGCCTGTGCCTCGCTCGATGAACATGTGCCA
CCACGTCGCTCAGGCAGACCACGCACGCCGTCAGTACGCCTACAACCCGT
CGACGACCCTCAGCTGCCTACAGTGGCAAAGGGTCTTATCAACTAGGCTA
CAACGCGCGTGCGCACCTGAGCCCATCGAGCTACCCCCGGCTCATCCACC
GGAGCCGGTGCAGCCCGTGTGCACGAGGTCCGCCGACGTGGAGGAGGTGC
TTTCAGCAGAAGGGGAGTCCCCCTTTCCGTCAGCGGTAGACACAGGGTCA
ACGGCGGTTCACAGGGCGCTACGAGTGGTGAAGCACCCGGACACGTTCAT
TCGACGCCAGCAAGACGATGCCCTGGGCCAGGTTTGGCGGGATCTAGGGG
GGAGTGGTAATGCAGGATACAGTTTGAATGATAAGGGAGTACTACGGTTC
GACGTTGGTCCACACACTACATGGACACGCAGGAGTTGGAGCGACCTTGG
CACTAATTTGGGATCACTTTCACTGGTCGAAACTCGCACGAGATGTCCAT
CAGTACGTTTTGTCGTGTAGCTGCAGACGCCGCAAAAGGCCCACTAGTAG
ACGCGTATCGATGCTGCCAGGGAGACCATTGGAACCTTGGGATGAACTTG
AGATTGACCTACTGAAAATTGACACATCATTGTCTGGTAACAAGTACATC
CTGCTTGTGGTAGACCGTGCATCCAAATTCCCTTTTGGTTTCCCTCGTGC
GACCAAGGAAGCCACAGGAGTAGCTAGAGCGTTGTCGGAACTTTGATTAA
CTTTCGGCGTCCCCAAAACCATTCGTTGCGATGGCGGTAAAGAGTTTGGC
GGAGAAGTAGTGACTCACCTGTGCCGGTGGTTACAGGCGGATATCACTTT
GGAGTAGCAGATCATGCCCAACGGCAAGGCTCAGTAGAGAGGCTAGGAGG
TTGGATGCAAGAGCTGTTGGCAGAGCTGTGCATATGCTGGAACGACCGTT
GGGATGATTATGTATCGCCTGCCATCTGGATTAAACGCACGCTGATATAC
ATTTCCATTCACCCGAACATGACCCCGTTTGAATTGTTGTTCGGTCGCAA
ACCCCGCACCTCGTTAGATTCGTTGGTGCCGCCTTCAGAGGAGGGAAACC
AAGATCCTTCGGGAGGTTTGGACAACTTCGTTGAACGGCGCAAGCAAAAC
CTTCGGGAAGTTCGGTTGGTGCTCGAGAAGCGCCACGACCTGCGGGTAGC
AGCAAGGGCCAAGTCGAGCGCCAATATTTCGAGGAGTGCGGTGTTGGTAA
CGGCAGAGAAAGGCAATTTGGTTATGGTGCGCGAGGCGGACAGCAGTCGT
CACCAAGACAAGCGGGGCCGGAAGCTGCAGCACGACCTCTACATCGGCCC
TTGGACAGTAGAAGAAGTTTTGCAGAGAGTCTTGAGTGTGCAAGTGAAGA
TGCAGGGGAGAAAGCTGCGTTCGCGGAGAGTTTGCACGGCCGAGTTGAAA
CTCTTTCATCTTCGCCCACCCCATTTGAGACATTCTATTGCCGAGGAATT
CATGCAGTTTGCGTGGGGCCCTGGCTTTGCAGCACCTGTCGAGCAGCCTG
ACCAATAGGGACGTTCGTCTCCCTCTCTGACTGCGTCGTGTGCATTTACC
TACCGGTGCGTT

protein sequence of EsuBft228_16a-0001

>EsuBft228_16 ID=EsuBft228_16|Name=EsuBft228_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MIRAEMQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMPLCIDWRVLKKLLV
SDSGGLGGMQTIFDGLKGKRYFTQIDLASGFHQFEIAEKDRYQTAFRDAD
GMLYEFTRAGFGLTVLPSAFTLRVKSALGMIDGVFSWLDDILVANETWEE
HLEQHIRLIESVASD

mRNA from alignment at Scaffold_523:630831..634501+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft228_16a-0001 ID=EsuBft228_16a-0001|Name=EsuBft228_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3671bp|location=Sequence derived from alignment at Scaffold_523:630831..634501+ (Ectocarpus subulatus male Bft15b)
ATGATAAGGGCTGAGATGCAACAGTTGCTGGATCGTGGTATCATTCGGCC
TTCCATGTCACCCTGGGCAGCTCAATGCTTGTGTGTTAAGAAGAAAGACG
GAACTATGCCACTGTGTATTGACTGGAGGGTGTTGAAAAAGCTTCTGGTA
TCCGACAGTGGCGGGCTAGGTGGTATGCAAACCATATTCGATGGACTGAA
AGGCAAGCGGTACTTCACTCAGATCGATCTAGCGTCAGGCTTTCATCAAT
TTGAAATCGCCGAGAAGGATCGCTATCAAACAGCCTTCCGTGACGCAGAT
GGCATGTTGTACGAGTTTACACGTGCGGGTTTCGGGCTGACAGTTTTACC
TTCCGCGTTCACGCTTCGAGTGAAGTCTGCTTTAGGAATGATCGATGGCG
TGTTTAGCTGGTTGGACGACATACTCGTCGCAAACGAAACGTGGGAAGAA
CACCTTGAACAACATATTCGCCTGATTGAGAGCGTAGCATCTGATTGAGA
GCGAGATTGCGCGATACGCTGTAGCCGGACTACCACTGAGAGGTGGAGCT
TGCTGTGTAGCTTGAATTGAAGGGCTAGCCCGTAGCTTCAAGCCGCTACC
CTGGTCATCCTGTGGGAGTCTCTCGTTGTGGAGCTACAGCGGGGAGCAGA
AGCTACAGCAGAGCCCACCGCCCGACGCGATACCGCCCTGAAACAGTTTG
AGCAGAAATATTATATCTGGGCAAATCTAGCAACTNGAGCAGAAATAGCC
AATCTGGGCAAATCTAGCAACTTGTCTAGCTCCTCGCTGCAGCATCCGAT
GACGATGACACGCATATGCTCGCGAAGCTGCTGATGAGACCTTCAATTTG
CACCGCTTCTTGGAATAGCCCGTCCCCTACTTGCCAAGAAATGGCAAGAG
GCGTCTGGACCCAAAATTTCAATTTTTTTGGCTCTCGCTCTCAATCAGAT
GCTACGCTCTCAATCAGGCGAATATGTTGTTCTTGCTGCATTGGTGCTCG
TTCTAACACGCCTTCGTGCTGCTGGACTGTCCGTTGACTTTTCGAAATGC
ATTTTCGGGGCTTCGTCCCAAGGGTTTCTCGGAATGATAATTGATGCTAC
CGGCATGCACCCAGCCCCGTCGAAACTCGAAGCGATTGCCAACATGCCCC
GGCCACGAACGGTCGAAGACCTGCGCACGTTTCTAGGCTTGACGGGATAT
CCCCGACAATTTGTCCCTCAATACAGTTTAGTTTCGGCTCCCCTACAGAC
AGATGTCCTCCGCAATAAGGACTTTGCGTCTAAGCGCGCACGTAAGCTCC
CAATTCAGTGGGGGGAAGCGGAGGAGCACGCCTTCCACCAACTAAGACAG
TGCCTGGCTTCCCCTACCGTGTTAGCTTTCCTGATCCTAATGCATCTTTT
GAGCTGCATTCAGATGCTCGCTCAGTGGGCGCAGGTGCTACCCTGCTGCA
GACCATCGACGATACACCCAGGATCATCGCTTTCGCTAGCCACAAGTTCT
CTCGCACCGACGCTCGACGAGGACCCACGGAACGGGAGTGCATGGGAGTA
TTGTGGGGCGTTGATCGTTTCAAGCCGTACCTAGCTGGTACTCAGTTCAA
AGTCGTGACGGATTGCTCTGCGCTCACGTGGTTGTTTCGCAGTAGAGAAC
TTGTCCCAAGTTGCATAGGTGGGCACTTCGCCTCATGGAGTACGACATAG
TATTAGAATGGAGGGCAGGAGTGCACACGTGTTGCCAGATGCTCTGTCCC
GTCTCCCCGTGGCCAGTAGCCCCTCCGCAGATGTAGACGACTCTTTTCCT
GACGATTTCACGTTCCCGAATTCCTCCACTTGTGTCGGCCCGCAAGGCCC
TGTGCTTGATGGTGTGCGTCTCGCGGACCTCACGACCGACGACGAATCCG
AGCCCGTAATTACCGATGGTGAGATTGATCCCGCGGTCATAGCACCACTA
TTGGCTGACTTCCCGTCGCTGCCTGTGCCTCGCTCGATGAACATGTGCCA
CCACGTCGCTCAGGCAGACCACGCACGCCGTCAGTACGCCTACAACCCGT
CGACGACCCTCAGCTGCCTACAGTGGCAAAGGGTCTTATCAACTAGGCTA
CAACGCGCGTGCGCACCTGAGCCCATCGAGCTACCCCCGGCTCATCCACC
GGAGCCGGTGCAGCCCGTGTGCACGAGGTCCGCCGACGTGGAGGAGGTGC
TTTCAGCAGAAGGGGAGTCCCCCTTTCCGTCAGCGGTAGACACAGGGTCA
ACGGCGGTTCACAGGGCGCTACGAGTGGTGAAGCACCCGGACACGTTCAT
TCGACGCCAGCAAGACGATGCCCTGGGCCAGGTTTGGCGGGATCTAGGGG
GGAGTGGTAATGCAGGATACAGTTTGAATGATAAGGGAGTACTACGGTTC
GAGTTTGAGAAAGGAAAACTGGTAAGAGCGACCCCCAAAAGCATGGTGGC
TAACATCCTAGCGTTGGTCCACACACTACATGGACACGCAGGAGTTGGAG
CGACCTTGGCACTAATTTGGGATCACTTTCACTGGTCGAAACTCGCACGA
GATGTCCATCAGTACGTTTTGTCGTGTAGCTGCAGACGCCGCAAAAGGCC
CACTAGTAGACGCGTATCGATGCTGCCAGGGAGACCATTGGAACCTTGGG
ATGAACTTGAGATTGACCTACTGAAAATTGACACATCATTGTCTGGTAAC
AAGTACATCCTGCTTGTGGTAGACCGTGCATCCAAATTCCCTTTTGGTTT
CCCTCGTGCGACCAAGGAAGCCACAGGAGTAGCTAGAGCGTTGTCGGAAC
TTTGATTAACTTTCGGCGTCCCCAAAACCATTCGTTGCGATGGCGGTAAA
GAGTTTGGCGGAGAAGTAGTGACTCACCTGTGCCGGTGGTTACAGGCGGA
TATCACTTTGGAGTAGCAGATCATGCCCAACGGCAAGGCTCAGTAGAGAG
GCTAGGAGGTTGGATGCAAGAGCTGTTGGCAGAGCTGTGCATATGCTGGA
ACGACCGTTGGGATGATTATGTATCGCCTGCCATCTGGATTAAACGCACG
CTGATATACATTTCCATTCACCCGAACATGACCCCGTTTGAATTGTTGTT
CGGTCGCAAACCCCGCACCTCGTTAGATTCGTTGGTGCCGCCTTCAGAGG
AGGGAAACCAAGATCCTTCGGGAGGTTTGGACAACTTCGTTGAACGGCGC
AAGCAAAACCTTCGGGAAGTTCGGTTGGTGCTCGAGAAGCGCCACGACCT
GCGGGTAGCAGCAAGGGCCAAGTCGAGCGCCAATATTTCGAGGAGTGCGG
TGTTGGTAACGGCAGAGAAAGGCAATTTGGTTATGGTGCGCGAGGCGGAC
AGCAGTCGTCACCAAGACAAGCGGGGCCGGAAGCTGCAGCACGACCTCTA
CATCGGCCCTTGGACAGTAGAAGAAGTTTTGCAGAGAGTCTTGAGTGTGC
AAGTGAAGATGCAGGGGAGAAAGCTGCGTTCGCGGAGAGTTTGCACGGCC
GAGTTGAAACTCTTTCATCTTCGCCCACCCCATTTGAGACATTCTATTGC
CGAGGAATTCATGCAGTTTGCGTGGGGCCCTGGCTTTGCAGCACCTGTCG
AGCAGCCTGACCAATAGGGACGTTCGTCTCCCTCTCTGACTGCGTCGTGT
GCATTTACCTACCGGTGCGTT

Coding sequence (CDS) from alignment at Scaffold_523:630831..634501+

>EsuBft228_16a-0001 ID=EsuBft228_16a-0001|Name=EsuBft228_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_523:630831..634501+ (Ectocarpus subulatus male Bft15b)
ATGATAAGGGCTGAGATGCAACAGTTGCTGGATCGTGGTATCATTCGGCC
TTCCATGTCACCCTGGGCAGCTCAATGCTTGTGTGTTAAGAAGAAAGACG
GAACTATGCCACTGTGTATTGACTGGAGGGTGTTGAAAAAGCTTCTGGTA
TCCGACAGTGGCGGGCTAGGTGGTATGCAAACCATATTCGATGGACTGAA
AGGCAAGCGGTACTTCACTCAGATCGATCTAGCGTCAGGCTTTCATCAAT
TTGAAATCGCCGAGAAGGATCGCTATCAAACAGCCTTCCGTGACGCAGAT
GGCATGTTGTACGAGTTTACACGTGCGGGTTTCGGGCTGACAGTTTTACC
TTCCGCGTTCACGCTTCGAGTGAAGTCTGCTTTAGGAATGATCGATGGCG
TGTTTAGCTGGTTGGACGACATACTCGTCGCAAACGAAACGTGGGAAGAA
CACCTTGAACAACATATTCGCCTGATTGAGAGCGTAGCATCTGATTGA