EsuBft228_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft228_11a-0001
Unique Name	EsuBft228_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:591381..597324 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FVJ0
ProteomeId	EsuBft228_11
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	IPR029008
Protein domains	IPR010742
Protein domains	TRANSMEMBRANE
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Note	Uncharacterized protein C20orf24 homolog OS:Mus musculus PE:2 SV:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1390
Hectar predicted targeting category	signal anchor
Evalue	8.5e-91
EggNOG OGs	KOG3415@1\|root,KOG3415@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Preferred name	C20orf24
KEGG ko	ko:K12870
KEGG Pathway	ko03040,map03040
KEGG Module	M00355
Description	Rab5-interacting protein (Rab5ip)
COG category	S
BRITE	ko00000,ko00001,ko00002,ko03041

Cross References

External references for this mRNA


Database	Accession
GO	0005739

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft228_11a	EsuBft228_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 591381..597324 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_11a-0001	EsuBft228_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 592321..597282 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_11a-0001-exon	agat-exon-13305	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 591381..592504 -
EsuBft228_11a-0001-exon	agat-exon-13306	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 593673..593785 -
EsuBft228_11a-0001-exon	EsuBft228_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 597172..597324 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_11a-0001-exon	agat-three_prime_utr-9147	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 591381..592320 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_11a-0001-cds	EsuBft228_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 592321..592504 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft228_11a-0001-exon	agat-five_prime_utr-5896	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 597283..597324 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:591381..597324-
coding sequence from alignment at Scaffold_523:591381..597324-

spliced messenger RNA

>EsuBft228_11a-0001 ID=EsuBft228_11a-0001|Name=EsuBft228_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1390bp|location=Sequence derived from alignment at Scaffold_523:591381..597324- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAGCTAGGACCAAGCCCGCACCGGCAAATGAGAGAGAAGCCATGAGTAA
CCGGAGCAGAAGAACAGTTGTGGCAGAGGCGGAGCCTACATTCGTGCAGA
GCTGCTCAACAAAATGGTCTAAGGGGTTGCAGCGAGGCGCCAGATGGGAT
AAGGACACATTCGAAGACTTTCCTGTATGCGTCCACTGGTTCAGACAAAT
CATGGCGGCGGTGGCGGGGACATGTGTGGGTTTCGCGGGAGTCACTGGAT
GGTTCGGGCTCGTTGGGGGATTCGCCTTCGTCACGGGGGCCACTTACTTG
TACTACGCGAGATTCGTCGAGGCGGACGAGTTGTCTTACGGTGATCAAGG
CCTAAAATGGGAGGGATTGCTGCCATCTCTCACGGTCTTCCTCCTGATGT
GGATCTTGTCGTTCAACTGCATGGGGCATGTATTGTTGAATATCGCGTAG
GGAGGCCGGGGGAAGTTGGGAGAAACAGTGCTTGCACTGCCTCGGGACTT
GGCTTGCCGGAGGCTACGCGTGACACCCACATGTTGCCGGGGTAAAACCT
CGGAGGGGGAGGAATTCTGCAGCGTGAAGAAGTTGTGGGCCGATTGGACC
GACGAACGCGAGGAACAAATTGAGTGTTTAACATGGGAAGCTCCTTCCTA
AGGCCTTCGGTGTTGTGTTGAGAGTTTCGAGGGTAGGCTTGACACTCGGC
ACACTCTCGACCCAGTGCAACTCGCTCGCTCACGTGATGGGCAGCGAGAG
CCAGCTTCGAGAGTCATGCTCTTTTGGTTCCACATATGAACGAGAGTATA
TGTAGGAATGACAAGCGTGTGTTGCGTGGTCTTGGTTGCGGGAAGGCGCG
CTTAACTGTCGACCCAGCATCTCGCTCTAGGCAAAGCTTAATTTCTGCTC
TTGAACGAGATACACTCGAGAGATTGGCTTTCACGTGAACCCTACGCTTC
CATCCCGTGCCTTGGGCGATGTGCTAGGTCGGGCGCTTTTTTTCGGTTGG
TGCAGTTGCGATCTTGTTTCATGAGAATGAGTATGAGTGATCTCGGGTCA
AGGATAGGCTGAAGGAGTTTGTTGAAGAGTGTAGTCAAGACAACCTGTCG
ATTTTCTTTTGTGTTTCAAGGATGCGCGACAATCCTTTCTCAGGCATTTT
TTTTTGTTCGTTCTGTTTTTCTTTGGTCTGGATTGTGGTCCAGTTCCTGC
TCAGGACAAACCTTTGTTATTGGAATGGAAAGGGGCATATTCGGCGTGCA
CCAGGGGGTGTAATAGTCTTCGGCACTTTGGCACTACGCCAGAGTTTGTG
GCCGTCTCCTTCACCGAAACGTGTTGTTCTCCAAACTATCGTAGACTAAA
GAATCCCCGACAGATTCTCCACACGCAGTCTTACTTTTGC

protein sequence of EsuBft228_11a-0001

>EsuBft228_11 ID=EsuBft228_11|Name=EsuBft228_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWF
RQIMAAVAGTCVGFAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYG
DQGLKWEGLLPSLTVFLLMWILSFNCMGHVLLNIA

mRNA from alignment at Scaffold_523:591381..597324-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft228_11a-0001 ID=EsuBft228_11a-0001|Name=EsuBft228_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5944bp|location=Sequence derived from alignment at Scaffold_523:591381..597324- (Ectocarpus subulatus male Bft15b)
GTAGCTAGGACCAAGCCCGCACCGGCAAATGAGAGAGAAGCCATGAGTAA
CCGGAGCAGAAGAACAGTTGTGGCAGAGGCGGAGCCTACATTCGTGCAGA
GCTGCTCAACAAAATGGTCTAAGGGGTTGCAGCGAGGCGCCAGATGGGAT
AAGGTATGTGTGTACAGCAGTATACCTCTGCCCCCGTTCTTCTGCTGTTG
CGCCGTGATCGCCCGCGGTGCCTTGGGAAGTCTTCCCATGGTAGGCCCGC
CTTTCTCTCCTCCTGGTTGACCAAACTTCCTAGTGTCCATATATTTATGG
GAACCATCAACTGCGCTCTGTGCTCATAGTGCTCACCATCCCGCAAATAG
ACCGGCCTTTCCTGACGGTAAAATGACAACTTTGTTCTTCGGGTGGTTGC
TCAACAGCGACAAGCAGTGGATGACGAGAGGAGACAATCCAGAACATACA
TCGTCGGCAAATTCTCGTGCTACAAAATTCACGGACACCGCCATGATCTC
GTTGGGAATATATGAAGGGAAACTTCAGGGGTTCTAAATTTGTTTGCCCT
CGAACCAGCAGCAGCTTCTCCGGGCTCAGCGGCCTCCACGTGGGTCCGCA
ATCTCGTAAACGGGTAGCTACAACTGCTGCTGTTGTAGAGACATCCCTTG
TAGAATCCCAGTGGCGTGTCCTTGGTATGCTACAGCCTACTGCCTTGTTG
GAGGATGATTTTTGTACTTCCGCAAGTCTGGGTTAGGTTAGGTGTGCTCA
CCAGGCATGCCCGGGTTGTTGGGCAACATACTTATATATATAGTACTTGG
TAGATATTCTGTCTACTGTAGTCGGGTGTATACGTTTTAGTCGGGTGTTC
ACCAGTAGATCACCCCGCTATTATTCACCCGCGCCGATGACACTGCTGTA
CATTTGTGGTTATCCCCGTGACATCCTGGTCGCTAACTCTCGGGAAGTGT
CTGAGTTGTGGATGTATTATTGGCCCTCTTTGGCATTGCGGGTTTACTCG
TGCGCTTTGCGAAGTGCGACTGACTAGATACAATGAAATCCTGATTGAGG
TGGGATTCGGTAGGGGGCATACGATATCACACCTCCTGGACTGACGGAAA
ATTTCCTCAACAGCAGAGGAAGAGGAAGGTGGTGGTGCCGAAAATGTGCG
GTGTTGGAACCACCTTTCCGAAAGCGTATCGTTTGATTCATACATAATAT
TCGTCGTGGAGTAATCGAACTTCGAAAACCGGTCAAGGGGGTGTGATATC
TTGCGCCACCTACGGTACACCTTTTCTTTGTTGCCTGCACAAAGTGTGTA
CCTGTATCGGGCTAAAGCGGGCATTTTGAGCTGGCCGGGAACATGGTGGC
TCGAAGCCGAGCGCGGTCTAGAAAGCAACAGAAGACGCCTGCATTCGTGG
TTCAGACGCATGGCTACGAGAGTGCGTGTAGTGCGCGAAGAGTAGATGAG
GTGCAAGCAGAGCAGCACATGCTGTGTATATGTCGTCAGCGTTGGTGCGT
AGCGGCGTATGTACCTGTGTGCCTCACCCTTTTTCTATCGCAGCTGTGTT
CAGGTATGTTCACAACACAACGAACAAACCCAACTGGACAAGCCCAAGCG
GACTACATGCACACATGCACAACGAGATCTCTCGGTGATCAGATGCCCTT
GATTGCTACGGTAGGAGAGATTAGCCTCTCTATGTCTATCGCTCACTCTG
CGACTCTCGTGTGAACACCCGCGCGCATGTGTGTGTCCACGCGTCCACGC
CTTACCTACGTATTTTCGCCTCAACAGCTTGCTGGTATCAGCATCAAAAG
TCACACCTGATTCTCAATCTCTCGCTCCCTCTACCTCGCCCTTTCAACTT
GACAACATTGTACATGACGCCTCTCATCGCTTTCGGCGGTGCTGAGTACC
GACAGCAAAGGCAGGCATCCGCTGCTCTATCGACGGACTGAGCACGATTT
GAGCGTAAATTGCATGAGGCAGGCCCCTGTCAATTGTCAAACGCACAAGG
TTTTTGTATTGTTAATCCGGTGCCGTCCTTGTGAGACGGGCCTCGAAATC
CTTCTCGAAGACACGATCGGACGGGCCGCCTCCAGCAAAAATTTCCACAC
GTCCTGGAGGTGACTTTGGCCTTTGCAAGCCTCTGCGAGTTTTTCCGCAA
GGGCATCTCAACAGCTTTCTAGCTGCGAACAGCCACCTCATCGGCGTGAT
CTGGTAGGCGGGCCCTCCTAAAGAAGTTTCTTCTATTTTCCTTGTGGTGT
GATGGAGTCGGTGGCCCGCATGGCCAAGAGCTGGTGTAACAGCTACCAGA
ACGTAGATAGATGTGTTGGCGAACACATGGCAAGGCTGCCGGTTCGAAGC
CAAAGTTGAACGACTGGGTACTGCGTACGCACACAGGTTGTGCTTCGGGC
CCCGTTGTCCAATCTCCTCCCTCTTGCGACCCTCCTGTAGGGGGACAAGT
CTACGCAGGAAAAAGTGTGGAATCGGCTAAGTTGGGGGTTAAGGGTTGGG
GTTAGGGGGGGTGTGCCCCCTCCCTTGTCTTTTTTCGGGCTAATCTTGCT
GTCTTTGCGTAGGCAGTCCGTCGGGGGAATAGAAGGCCGTGGTGGCATTT
TTTATTTCGCCGTAAGAACACGGGTAGCCCCAGCGTTGTAGTATTTTTTT
TCCGTGGCAACCCTCATGTGTCCCGCACCCTAACTCCCACTCACGGCATT
TCAATGCCTTCAGCCTATCTTCATGCCGTAGACTGTGCCCCCACCTGGTA
CCGATCTGTCCCAGAAGGCACCGCGACACCCATGGCCTCTAGTGTCCAAG
ATTCGTTGTTTTTGCGGCGGCAGTGATGTCCCACCCCTACCCTAACCATT
GCTCCGCTCGCTGTTGAGAGTGCATCGTGTGTTGCGGGCATCCTACTTGG
TTTTCATACATTCAGATATCGGGGCAATCGCGGAGCTAAGCCTGAGTGCC
ATGTCCTAGCTAGATCTCTCCAGCCCACACGGGTGGCTTTTCCGCCATTT
TTTCCTTTGAGGCATTGTCCTGCTGTCAGGTGGAATCTGCGAGGACCCCT
CCACAATACCCCCACATATTTGGAAGGGTTCTCACCGCAGTGTGGGGTCT
GGTCACATCTTGTTACCCACGTATGGTCAAGGTGCAAAGTATATATATAT
ATATATGTAAATGGTGCAACAAACAATTTTGGTCTTGTATATATCAACAA
GGGTAGGCGAACCACAACCTGTCTCATCGCATTTGTCGCGCCAAACAGCA
AGTTGACCACCCTCCCTTGTTGTTTTTCGCCGTGGTGGTTCGGAGAATGT
CATGTGGCTGAGGTGGTGCCACTCTTGTCGTGCTAGTGCTGCCACTTGGT
TCATGTTTGTTTCCTTCGAGGTGATTCATGTTGACCTCTCGCTCAAGAGG
TTCTGGGCTATTCACCACCCTCCTGCTGCTCCTGCTCCTGCTCCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTGCTGCTGCCGTTGCCG
CCACGGCGTTGCCATTCCGATTATGATTGTTGTCCGCAGGACACATTCGA
AGACTTTCCTGTATGCGTCCACTGGTTCAGACAAATCATGGCGGCGGTGG
CGGGGACATGTGTGGGTTTCGCGGGAGTCACTGGATGGTTCGGGCTCGTT
GGGTGAGCAAGTTGTGAACGAGTTAGCTTCGTCACTGAGCGACACGTGAT
TGCTCGATTCCTGCCCCGGGCCTTCGTTTACCACAATGTGGCTCGTGTGT
TGTCTACTCTGCACACATGAATGGTTTGGGATGGCGCGGACTGTTCCTCG
AGACTCCGCTCCTTTCCTCCAGAAATTCAATGTTGAGTGGATGAATGGCC
AACGTTCGGCACAAATCTCACGAAGAATGCAATAGTATTTTTATCCTCCC
TGCCCGCTCTCCTCCGGCCGGGAACCAAACTAGAGGGCGAAATGCCCCCG
CATTGGAAATGGAAGCGCCAAATGGCGGACGAGGATAAGATGTTAGAGAG
TTGTTTGTTTTTACACTTTCGCCGGCGTCCAAAGGCACTCGTACCGGCAA
GTACAGCCAATGTGCGTTCCCGTGGTGGGGTGCATGCCGCCTACATAAGA
GGCGGTGGATGACAAAGGATTCATTGAAGTCGCCCCTGCTTTTCCGCGTG
CACACCCTCACCAGTAAGTTTCTGGCCTTGCCAGGGTTTCAGTCTCGCGA
TGGCGAGTTTCGCTTGCCCCTTTCCCCACTGAGACGCTGCCAGAGCGGGG
TTCGTTGAATGAATGGTAATATGGTCGCCCCGGTGGTCTAGTTGGTATTC
TCGAAACCTTCCAGAGGTCAGATCAAGGGTTCGAATCCCGGCGTAAGCGA
ACTTTTCTTGCAAAGTGAGTTTTTCTCTCGCTTCCGCTCCTGGCCTAGTG
GACAGCGCTAGTTCGTGTGTACACAGAGGGAAGAGAGTGCTGAACTATTC
TCGCACTAAAAATCGAAGGCGAAGTACCGCAGGAGGGGAGGGTATAGAGG
GGCTCTTCTGTGTGACCACGGGTCGGAGTTAGCGGCCCCAGTGCTGTGAG
CGCTGATTTGAAGTAAGACAAAATATATATATATGCATATACACAGATCT
TTGTTACCATATGTGTTCGTATTCTCCGAAACGAAGCGCAAGAAACATCG
TTCGCCCGAATAAACATGGGATCATCTCCCTACACTATTTGGATTCGTCC
AAGTTTCGGACTTCCAGTGGCATGTTTTGGCGACACGAGTTGTGCACCCC
CTCCTGCGGTTCGGCATTTATGAAGAATGACGCCGCCGTCTGTGTGCTTA
TCCGCTTCGCGTGTACGAAGGGGATTCGCCTTCGTCACGGGGGCCACTTA
CTTGTACTACGCGAGATTCGTCGAGGCGGACGAGTTGTCTTACGGTGATC
AAGGCCTAAAATGGGAGGGATTGCTGCCATCTCTCACGGTCTTCCTCCTG
ATGTGGATCTTGTCGTTCAACTGCATGGGGCATGTATTGTTGAATATCGC
GTAGGGAGGCCGGGGGAAGTTGGGAGAAACAGTGCTTGCACTGCCTCGGG
ACTTGGCTTGCCGGAGGCTACGCGTGACACCCACATGTTGCCGGGGTAAA
ACCTCGGAGGGGGAGGAATTCTGCAGCGTGAAGAAGTTGTGGGCCGATTG
GACCGACGAACGCGAGGAACAAATTGAGTGTTTAACATGGGAAGCTCCTT
CCTAAGGCCTTCGGTGTTGTGTTGAGAGTTTCGAGGGTAGGCTTGACACT
CGGCACACTCTCGACCCAGTGCAACTCGCTCGCTCACGTGATGGGCAGCG
AGAGCCAGCTTCGAGAGTCATGCTCTTTTGGTTCCACATATGAACGAGAG
TATATGTAGGAATGACAAGCGTGTGTTGCGTGGTCTTGGTTGCGGGAAGG
CGCGCTTAACTGTCGACCCAGCATCTCGCTCTAGGCAAAGCTTAATTTCT
GCTCTTGAACGAGATACACTCGAGAGATTGGCTTTCACGTGAACCCTACG
CTTCCATCCCGTGCCTTGGGCGATGTGCTAGGTCGGGCGCTTTTTTTCGG
TTGGTGCAGTTGCGATCTTGTTTCATGAGAATGAGTATGAGTGATCTCGG
GTCAAGGATAGGCTGAAGGAGTTTGTTGAAGAGTGTAGTCAAGACAACCT
GTCGATTTTCTTTTGTGTTTCAAGGATGCGCGACAATCCTTTCTCAGGCA
TTTTTTTTTGTTCGTTCTGTTTTTCTTTGGTCTGGATTGTGGTCCAGTTC
CTGCTCAGGACAAACCTTTGTTATTGGAATGGAAAGGGGCATATTCGGCG
TGCACCAGGGGGTGTAATAGTCTTCGGCACTTTGGCACTACGCCAGAGTT
TGTGGCCGTCTCCTTCACCGAAACGTGTTGTTCTCCAAACTATCGTAGAC
TAAAGAATCCCCGACAGATTCTCCACACGCAGTCTTACTTTTGC

Coding sequence (CDS) from alignment at Scaffold_523:591381..597324-

>EsuBft228_11a-0001 ID=EsuBft228_11a-0001|Name=EsuBft228_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_523:591381..597324- (Ectocarpus subulatus male Bft15b)
ATGAGTAACCGGAGCAGAAGAACAGTTGTGGCAGAGGCGGAGCCTACATT
CGTGCAGAGCTGCTCAACAAAATGGTCTAAGGGGTTGCAGCGAGGCGCCA
GATGGGATAAGGACACATTCGAAGACTTTCCTGTATGCGTCCACTGGTTC
AGACAAATCATGGCGGCGGTGGCGGGGACATGTGTGGGTTTCGCGGGAGT
CACTGGATGGTTCGGGCTCGTTGGGGGATTCGCCTTCGTCACGGGGGCCA
CTTACTTGTACTACGCGAGATTCGTCGAGGCGGACGAGTTGTCTTACGGT
GATCAAGGCCTAAAATGGGAGGGATTGCTGCCATCTCTCACGGTCTTCCT
CCTGATGTGGATCTTGTCGTTCAACTGCATGGGGCATGTATTGTTGAATA
TCGCGTAG