EsuBft2263_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2263_4a-0001
Unique NameEsuBft2263_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:15268..17147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2263_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length124
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_4aEsuBft2263_4aEctocarpus subulatus male Bft15bgeneScaffold_548 15268..17147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_4a-0001EsuBft2263_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 16832..16981 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_4a-0001-exonagat-exon-92270Ectocarpus subulatus male Bft15bexonScaffold_548 15268..15290 -
EsuBft2263_4a-0001-exonEsuBft2263_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 15925..17147 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_4a-0001-exonagat-three_prime_utr-9029Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_548 15268..15290 -
EsuBft2263_4a-0001-exonagat-three_prime_utr-9030Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_548 15925..16831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_4a-0001-cdsEsuBft2263_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 16832..16981 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_4a-0001-exonagat-five_prime_utr-5824Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 16982..17147 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2263_4a-0001 ID=EsuBft2263_4a-0001|Name=EsuBft2263_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1246bp|location=Sequence derived from alignment at Scaffold_548:15268..17147- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGCCGCCGCCGCCGCCACAGCTATTGATGGCGCCGCAGGGCGCAGCTG
GCGGGGCGGTGTTACACCCGCAGCAGATCGAGCAGGTACGTCAGCCACTC
CCGCCGCTGCCGTTGCCTGTGCAGCAGAGACGGCAGGTGGCATCGTCGGT
GACGCCCTGACCGGCCATGGTTTACATCTGGTTTTGCAGCATGGCGTACC
GCATGGCTCAGGGACAGGCGGTCATGAGGAGGAAGGCAACGGGGGGGACG
GGGAGGCAAAGGATACCTCCAGCGGAAAGCCCGTCCCTGTCATCGTGCCT
GCTAATGCTACGTTAGCGAAGTGCAGCTGGTGCTGTTCGAAAAGCAAGAC
AGTTACTTCGATTTGTCGTGGGTGTCTCAAACGATGGCATTGCCACGTTG
ACCATGGGCTGATCGACCTCACCAAGGATCGCTTCATTTGCTGCTTCTGC
GATACCAAGACGAAGTCGGCATGTCTGTGTCACGCGTGAGTACCCCATTT
CTTTTTCCGCTGTTCAGTTTCTTTGTTCAATTGCAATCCTCTTTTAATTA
TGCGATCAAGAGTGATGTGCCAGATCGAGATCTCGGAAGCTTCTCACGCA
CGTGGGTTTCACCCGATTCGATGCCACCCATATGTGGTTTTTTTTACAGG
AATATGCAACAATATCTTGGCTTCCACAGCGCTCTCGCAGCCTGGTAGGC
TGTCACCTGTTTTCACCTAGTTGCTCCGGGAATGTTGCTGGTGATGATCT
GTATCGACTCCAACTTTTCTGTTTGCTTGACCATCGGTGTTTGTTAGGTG
TTCACCCTCTCGCAGTGCGACCAAGACCGAAGCGTCCACAATACGACCTG
CTCTCAGCGTGCGTGCTGAACGTATACTCATTTTCCCCCCTCTTTTTTTC
CCACCATCACATGCTTCGTACTCATACAGGTGCAAGAAAAACAAAGCTGA
TAAGCGAGCGGCATCCCAACGAGCTCAAGCCGGCCACATCCACGGGAGTA
GCGTGTCCCGAGTGGTTCACCGCCAGGCTCGAACCAGCGCTTTCAAGCTC
CGTCTGCCTCTCACGGTTGCGGCGCGCAACAATAGAGATAGAGAAAAGGC
ACTGTTTTCGGTCTCCACCACCGCCCGCGGCGAACGTGTCATGGTCATCA
CCGACGTCACCGCCGAGCAACCTGGTGCGCCTGCGAGCTGCATCGTGAAC
TGCTGCGATAACCGATGCCAACACTGGGCACACGTCGAGACGGATT
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protein sequence of EsuBft2263_4a-0001

>EsuBft2263_4 ID=EsuBft2263_4|Name=EsuBft2263_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MVYIWFCSMAYRMAQGQAVMRRKATGGTGRQRIPPAESPSLSSCLLMLR
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mRNA from alignment at Scaffold_548:15268..17147-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2263_4a-0001 ID=EsuBft2263_4a-0001|Name=EsuBft2263_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1880bp|location=Sequence derived from alignment at Scaffold_548:15268..17147- (Ectocarpus subulatus male Bft15b)
GCCGCCGCCGCCGCCGCCACAGCTATTGATGGCGCCGCAGGGCGCAGCTG
GCGGGGCGGTGTTACACCCGCAGCAGATCGAGCAGGTACGTCAGCCACTC
CCGCCGCTGCCGTTGCCTGTGCAGCAGAGACGGCAGGTGGCATCGTCGGT
GACGCCCTGACCGGCCATGGTTTACATCTGGTTTTGCAGCATGGCGTACC
GCATGGCTCAGGGACAGGCGGTCATGAGGAGGAAGGCAACGGGGGGGACG
GGGAGGCAAAGGATACCTCCAGCGGAAAGCCCGTCCCTGTCATCGTGCCT
GCTAATGCTACGTTAGCGAAGTGCAGCTGGTGCTGTTCGAAAAGCAAGAC
AGTTACTTCGATTTGTCGTGGGTGTCTCAAACGATGGCATTGCCACGTTG
ACCATGGGCTGATCGACCTCACCAAGGATCGCTTCATTTGCTGCTTCTGC
GATACCAAGACGAAGTCGGCATGTCTGTGTCACGCGTGAGTACCCCATTT
CTTTTTCCGCTGTTCAGTTTCTTTGTTCAATTGCAATCCTCTTTTAATTA
TGCGATCAAGAGTGATGTGCCAGATCGAGATCTCGGAAGCTTCTCACGCA
CGTGGGTTTCACCCGATTCGATGCCACCCATATGTGGTTTTTTTTACAGG
AATATGCAACAATATCTTGGCTTCCACAGCGCTCTCGCAGCCTGGTAGGC
TGTCACCTGTTTTCACCTAGTTGCTCCGGGAATGTTGCTGGTGATGATCT
GTATCGACTCCAACTTTTCTGTTTGCTTGACCATCGGTGTTTGTTAGGTG
TTCACCCTCTCGCAGTGCGACCAAGACCGAAGCGTCCACAATACGACCTG
CTCTCAGCGTGCGTGCTGAACGTATACTCATTTTCCCCCCTCTTTTTTTC
CCACCATCACATGCTTCGTACTCATACAGGTGCAAGAAAAACAAAGCTGA
TAAGCGAGCGGCATCCCAACGAGCTCAAGCCGGCCACATCCACGGGAGTA
GCGTGTCCCGAGTGGTTCACCGCCAGGCTCGAACCAGCGCTTTCAAGCTC
CGTCTGCCTCTCACGGTTGCGGCGCGCAACAATAGAGATAGAGAAAAGGC
ACTGTTTTCGGTCTCCACCACCGCCCGCGGCGAACGTGTCATGGTCATCA
CCGACGTCACCGCCGAGCAACCTGGTGCGCCTGCGAGCTGCATCGTGAAC
TGCTGCGATAACCGATGCCAACAGTGAGTCGATGTAGTTGTTGGGAGATG
TCACGAAACAACAGTGCTTGTGTGGTGTTCGATACTCTTCCTTCTCACAG
GCAAATCTCCGATCGAAACTACATATTTTTGTTGCAACCCAACGCTTTTA
TAACTCAGTTGGAAAAGAAAAGGCATTTGCAGGGCACAGATAAGGGCCCG
GCCGTTCTGTGGTATCATTTTGTTTTTCGATAGTTGCTGCTCGGTGAGTT
ATCAGAAATTTGTCGGCACATATATATTTTTTCTGACGACCCACTGTCAC
TTGCATGGTTGCTTTGGTATGTTTTTGCAGTGTGCAAGCGGAACCCGAGC
ACGCGCCAAACGCCGAGCAGGTTGCAGCGGGCCAATGTGAGCACGCTGAC
GTCATTCTCGGAGATGGGACCACCCCGAAGGCGGATATTCCTGAAGCAGA
GCCGGTTGTCTTTGGTAAGGATGGGGAAGGGATCGAAAGCGTTGGGGATG
CAGCGATAACCCAGATGGTTTTGACTCAGGGTAGATTTGACACGATTATA
AGGATGGCAGCGAATGCAGAGGAGCATGGGGTGCCGCTGTTGATGCGCGT
AGGCGAGACCCAGACGTATGTTGTGTACCATCCGGGTCATCGGTCTATTC
CTGGCAGCTGGGCACACGTCGAGACGGATT
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Coding sequence (CDS) from alignment at Scaffold_548:15268..17147-

>EsuBft2263_4a-0001 ID=EsuBft2263_4a-0001|Name=EsuBft2263_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_548:15268..17147- (Ectocarpus subulatus male Bft15b)
ATGGTTTACATCTGGTTTTGCAGCATGGCGTACCGCATGGCTCAGGGACA
GGCGGTCATGAGGAGGAAGGCAACGGGGGGGACGGGGAGGCAAAGGATAC
CTCCAGCGGAAAGCCCGTCCCTGTCATCGTGCCTGCTAATGCTACGTTAG
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