Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2263_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 108 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2263_2a-0001 ID=EsuBft2263_2a-0001|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1086bp|location=Sequence derived from alignment at Scaffold_548:860..2318+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CATCCTGTTTCACCATCAACATCGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATACAGAGGACACCACTCTCGAGGT
CCTCAGCCCTAAACTCCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCAACTCGGTAGTAAGGCA
GCACCGGAAGAAGCACAACCGCGGGATACTGCTAACCTCCTGGCTGTTAA
AGAAGGGTACCACGAAGGCAGCTGGCAGTAAGTTGTCCTCTGTAGTTGCT
GATGAAGATCAGCTCCGCGAAAAGGGTAGAGAGCATGCTGAAGCCATCCA
AGAACGAGCATCAAAGCGCGGCAACCAACAGGCTGCCGCTGCTGCTGCTG
CTGCTGCTTCGGGGAAGGGGAAGCGCAAGGGGGCGGACGTAGCTCTCTCC
GACCCTCTAGCATTGGCTCACGATGGCGGGACGAGAAGCGGGGCTACCCC
AGAGGCTTCGCGCGAGGAACAGGCTTCGGAGGAGCGTCGCTCTAGCGCGC
TGGAGTTGATCCAGAAGGACCACGTGTTGATGGAGCGAGTACGGGCCATG
CTGGGGGCGAGCGCTGCAGACCAGGCAGCAGCTAAGGAGGCGGCGGTCAA
CGCGGCGAACACTCGCGCGCTCCGTGCCTCGCTCCAAGCGCTGAAGCGGC
ACAGCAACAGCTCGATAGGGTGGACCGCGTACACGACAGCGCTCGCCACA
GCAGCGGGAGCGGGGGAGCACACGTGTCCTGACCCCAACCTGTGCCCCCC
TGGCAACCGGTGCAAGCCCGCTGAGCCTGGTGGAGTGAGCTTTGCCGAGC
GAGCCAAGAGTCTCGGCATTCGGTACGAGACTTTCAGCGACGCACGTGTG
CGGATGCACAACACGAACCACGACATCGCCCCCAGGGACGCTGTGAGTGA
CGGGTGCTACGTGTATAACGAGCGCAAGACACGGAGTGACGTGACGAATC
CCGAGGTAATGGCTCTCGCCAAGGCTTTTTGGCACTCCGACGACGTTTCC
CGTGCAACAGGAAATTCAGGCAAGTTGCTGCGTNNN back to topprotein sequence of EsuBft2263_2a-0001 >EsuBft2263_2 ID=EsuBft2263_2|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MLVDRNSVVRQHRKKHNRGILLTSWLLKKGTTKAAGSKLSSVVADEDQLR
EKGREHAEAIQERASKRGNQQAAAAAAAAASGKGKRKGADVALSDPLALA
HDGGTRSGATPEASREEQASEERRSSALELIQKDHVLMERVRAMLGASAA
DQAAAKEAAVNAANTRALRASLQALKRHSNSSIGWTAYTTALATAAGAGE
HTCPDPNLCPPGNRCKPAEPGGVSFAERAKSLGIRYETFSDARVRMHNTN
HDIAPRDAVSDGCYVYNERKTRSDVTNPEVMALAKAFWHSDDVSRATGNS
GKLLRX back to topmRNA from alignment at Scaffold_548:860..2318+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2263_2a-0001 ID=EsuBft2263_2a-0001|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1459bp|location=Sequence derived from alignment at Scaffold_548:860..2318+ (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCATCAACATCGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATACAGAGGACACCACTCTCGAGGT
CCTCAGCCCTAAACTCCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCAACTCGTTGCAGTCTCA
TGCTTGTAGACCGCAATCCACGTCCGCGGGGAAAAGAGGGTAGTAAGGCA
GCACCGGAAGAAGCACAACCGCGGGATACTGCTAACCTCCTGGCTGTTAA
AGAAGGGTACCACGAAGGCAGCTGGCAGTAAGTTGTCCTCTGTAGTTGCT
GATGAAGATCAGCTCCGCGAAAAGGGTAGAGAGCATGCTGAAGCCATCCA
AGAACGAGCATCAAAGCGCGGCAACCAACAGGCTGCCGCTGCTGCTGCTG
CTGCTGCTTCGGGGAAGGGGAAGCGCAAGGGGGCGGACGTAGCTCTCTCC
GACCCTCTAGCATTGGCTCACGATGGCGGGACGAGAAGCGGGGCTACCCC
AGAGGCTTCGCGCGAGGAACAGGTGAGGTTTTGGGTTGCTGAAGTGCTGT
TGAAATGCTTGGACTACAGTATTGTACTTCTTGGCGCCAATTCGTGCCGC
TCTAAATTTAAACAGTATTTGAATTTTGGTACGCACGGCCCTCTGTTGCT
CGTGCTCCCGAGATTGATCTCCATTCCACGACTTCGTGATGTTAGCGTAG
AAAGCGCATGAAAAGTTGCATGGGATCACTGTTGTACTAATTGCAGGCTT
CTACGTGTGGCATTTGTTGTTGGCCCACCCATACTCCTGCTGAACATAAC
ACACACCCTCCCCCGACTCCAACAACTCCTGATACATGTACGCAGGCTTC
GGAGGAGCGTCGCTCTAGCGCGCTGGAGTTGATCCAGAAGGACCACGTGT
TGATGGAGCGAGTACGGGCCATGCTGGGGGCGAGCGCTGCAGACCAGGCA
GCAGCTAAGGAGGCGGCGGTCAACGCGGCGAACACTCGCGCGCTCCGTGC
CTCGCTCCAAGCGCTGAAGCGGCACAGCAACAGCTCGATAGGGTGGACCG
CGTACACGACAGCGCTCGCCACAGCAGCGGGAGCGGGGGAGCACACGTGT
CCTGACCCCAACCTGTGCCCCCCTGGCAACCGGTGCAAGCCCGCTGAGCC
TGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCATTCGGTACG
AGACTTTCAGCGACGCACGTGTGCGGATGCACAACACGAACCACGACATC
GCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAACGAGCGCAA
GACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCGCCAAGGCTT
TTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCAGGCAAGTTG
CTGCGTNNN back to topCoding sequence (CDS) from alignment at Scaffold_548:860..2318+ >EsuBft2263_2a-0001 ID=EsuBft2263_2a-0001|Name=EsuBft2263_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=918bp|location=Sequence derived from alignment at Scaffold_548:860..2318+ (Ectocarpus subulatus male Bft15b)
ATGCTTGTAGACCGCAACTCGGTAGTAAGGCAGCACCGGAAGAAGCACAA
CCGCGGGATACTGCTAACCTCCTGGCTGTTAAAGAAGGGTACCACGAAGG
CAGCTGGCAGTAAGTTGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCGC
GAAAAGGGTAGAGAGCATGCTGAAGCCATCCAAGAACGAGCATCAAAGCG
CGGCAACCAACAGGCTGCCGCTGCTGCTGCTGCTGCTGCTTCGGGGAAGG
GGAAGCGCAAGGGGGCGGACGTAGCTCTCTCCGACCCTCTAGCATTGGCT
CACGATGGCGGGACGAGAAGCGGGGCTACCCCAGAGGCTTCGCGCGAGGA
ACAGGCTTCGGAGGAGCGTCGCTCTAGCGCGCTGGAGTTGATCCAGAAGG
ACCACGTGTTGATGGAGCGAGTACGGGCCATGCTGGGGGCGAGCGCTGCA
GACCAGGCAGCAGCTAAGGAGGCGGCGGTCAACGCGGCGAACACTCGCGC
GCTCCGTGCCTCGCTCCAAGCGCTGAAGCGGCACAGCAACAGCTCGATAG
GGTGGACCGCGTACACGACAGCGCTCGCCACAGCAGCGGGAGCGGGGGAG
CACACGTGTCCTGACCCCAACCTGTGCCCCCCTGGCAACCGGTGCAAGCC
CGCTGAGCCTGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCA
TTCGGTACGAGACTTTCAGCGACGCACGTGTGCGGATGCACAACACGAAC
CACGACATCGCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAA
CGAGCGCAAGACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCG
CCAAGGCTTTTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCA
GGCAAGTTGCTGCGTNNN back to top
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