EsuBft2262_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2262_3a-0001
Unique NameEsuBft2262_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:20699..21725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2262_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length44
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2262_3aEsuBft2262_3aEctocarpus subulatus male Bft15bgeneScaffold_242 20699..21725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2262_3a-0001-exonEsuBft2262_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 20699..20729 +
EsuBft2262_3a-0001-exonagat-exon-110679Ectocarpus subulatus male Bft15bexonScaffold_242 20968..21174 +
EsuBft2262_3a-0001-exonagat-exon-110680Ectocarpus subulatus male Bft15bexonScaffold_242 21523..21725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2262_3a-0001-cdsEsuBft2262_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 20699..20729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2262_3a-0001EsuBft2262_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 20699..21725 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2262_3a-0001 ID=EsuBft2262_3a-0001|Name=EsuBft2262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=441bp|location=Sequence derived from alignment at Scaffold_242:20699..21725+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAACATCGACTTTCGCGACTCGCGCTCAATAAACGATGCTACTAA
TAACGGTGCCCGACCGGCCACAGCTCCGGTGAACTCGGAGGAGGGAGGGG
TGGTGGGGGTGCCGGGACTTTCCAGCCTGACGGTGGCCGACGCCGTGGTG
ACAGAGTACGAGAAGCTTCTGGCGGCCATACCCACGATGGCGAGGCACAT
GGGGAAGCTGCAGCTGGACACCGAGGTCATGGCGGAGGGTCTCGAGAGGC
GCGTGCGCAGCCTGGTAGACGGCTACCGCGAGCTGAACGAGCTGGTAGAC
CAGGCCCCCGCTAGGGTTAGCGACGCCGCCTCCGAGTACGCACAGGCTCT
CGGCCTTCGCCGCACCCAAGGCTCGCCCCTCCCGGGCGATGCTGCCAACA
GGGATGGTTCGGATCAGGCAAGTGTGTCTCTTTCGTACTAA
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protein sequence of EsuBft2262_3a-0001

>EsuBft2262_3 ID=EsuBft2262_3|Name=EsuBft2262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MPNIDFRDSRSINDATNNGARPATAPVNSEEGGVVGVPGLSSLTVADAVV
TEYEKLLAAIPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVD
QAPARVSDAASEYAQALGLRRTQGSPLPGDAANRDGSDQASVSLSY
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mRNA from alignment at Scaffold_242:20699..21725+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2262_3a-0001 ID=EsuBft2262_3a-0001|Name=EsuBft2262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1027bp|location=Sequence derived from alignment at Scaffold_242:20699..21725+ (Ectocarpus subulatus male Bft15b)
ATGCCAAACATCGACTTTCGCGACTCGCGCTGTATCTGAAAGTGGGTCGT
TGCTACCTGTAAGTAATGCTGTTCATACAAATCCTCTGGTGATCCTGTGT
AATTCGAAGTGCAGTGGAAGGTAGACGTCCGATAACCCGATTCAAAAGAC
CCTTCCTGTCCGATGATGATCTACATCTCTCGCGTTGAAACTGACCTTTG
CTGTTTTTCCGCCTCGTCCAGTATCGCCTCTACCTTCTCGGCGAGGCAAG
GCCAATGCCGGCGCAGCAGCAATAAACGATGCTACTAATAACGGTGCCCG
ACCGGCCACAGCTCCGGTGAACTCGGAGGAGGGAGGGGTGGTGGGGGTGC
CGGGACTTTCCAGCCTGACGGTGGCCGACGCCGTGGTGACAGAGTACGAG
AAGCTTCTGGCGGCCATACCCACGATGGCGAGGCACATGGGGAAGCTGCA
GCTGGACACCGAGGTCATGGCGGAGGGTGAGCGCCAAGCTGGCGGCCACG
GATCGGCACTGCTGCCGTCCTTTTGCCAGTCGTGTGCCATGCACCATCCT
GTGCGGTCAGGAACTGGGCCTAGTGTGCCGCCTACAAGAGCCCAAACTTG
TCCCTTTTTTTTCCTCCAATCGTTTGTTCCATTGAGAGACTTGTGTTGTT
GTTATTGGGCATGCCAAATATTTCTATGCAAAGATACATCCGCAACCAGT
TGGACACGTGCGGATGCTGGAAGAAACCGAGCATTTATCAAAAATGTTTT
TTATTGCAAAGGCAACAACAACCACTGCAATACGCCATTACATCGTTCCC
GCGGTGACCCTCATGCTGTTGCAGGTCTCGAGAGGCGCGTGCGCAGCCTG
GTAGACGGCTACCGCGAGCTGAACGAGCTGGTAGACCAGGCCCCCGCTAG
GGTTAGCGACGCCGCCTCCGAGTACGCACAGGCTCTCGGCCTTCGCCGCA
CCCAAGGCTCGCCCCTCCCGGGCGATGCTGCCAACAGGGATGGTTCGGAT
CAGGCAAGTGTGTCTCTTTCGTACTAA
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Coding sequence (CDS) from alignment at Scaffold_242:20699..21725+

>EsuBft2262_3a-0001 ID=EsuBft2262_3a-0001|Name=EsuBft2262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_242:20699..21725+ (Ectocarpus subulatus male Bft15b)
ATGCCAAACATCGACTTTCGCGACTCGCGCTCAATAAACGATGCTACTAA
TAACGGTGCCCGACCGGCCACAGCTCCGGTGAACTCGGAGGAGGGAGGGG
TGGTGGGGGTGCCGGGACTTTCCAGCCTGACGGTGGCCGACGCCGTGGTG
ACAGAGTACGAGAAGCTTCTGGCGGCCATACCCACGATGGCGAGGCACAT
GGGGAAGCTGCAGCTGGACACCGAGGTCATGGCGGAGGGTCTCGAGAGGC
GCGTGCGCAGCCTGGTAGACGGCTACCGCGAGCTGAACGAGCTGGTAGAC
CAGGCCCCCGCTAGGGTTAGCGACGCCGCCTCCGAGTACGCACAGGCTCT
CGGCCTTCGCCGCACCCAAGGCTCGCCCCTCCCGGGCGATGCTGCCAACA
GGGATGGTTCGGATCAGGCAAGTGTGTCTCTTTCGTACTAA
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