EsuBft225_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft225_8a-0001
Unique NameEsuBft225_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:900335..903604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3Z2
ProteomeIdEsuBft225_8
Protein domainsIPR000352
Protein domainsSSF75620
Protein domainsPTHR11075
Protein domainsIPR014720
Ownerapollo_admin@sb-roscoff.fr
Noteprobable peptide chain release factor mitochondrial os:homo sapiens gn:c12orf65 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1474
Hectar predicted targeting categorymitochondrion
Evalue1.93e-93
EggNOG OGsCOG0216@1|root,KOG2726@2759|Eukaryota
Ec32 ortholog descriptionPeptide chain release factor class I/class II
Ec32 orthologEc-19_000730.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameC12orf65
KEGG rclassRC00003,RC00033,RC00060,RC00181,RC00496
KEGG koko:K03462,ko:K11428
KEGG ReactionR01271,R03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko00760,ko01100,ko04621,map00310,map00760,map01100,map04621
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0015934,GO:0016020,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0070013,GO:0070126,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0098798,GO:0140053,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EC2.1.1.43,2.4.2.12
Descriptiontranslation release factor activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0003747
GO0005739
GO0006415
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft225_8aEsuBft225_8aEctocarpus subulatus male Bft15bgeneScaffold_523 900335..903604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_8a-0001EsuBft225_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 900335..902419 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_8a-0001-exonagat-exon-54558Ectocarpus subulatus male Bft15bexonScaffold_523 900335..900526 +
EsuBft225_8a-0001-exonEsuBft225_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 901391..901537 +
EsuBft225_8a-0001-exonagat-exon-54559Ectocarpus subulatus male Bft15bexonScaffold_523 902135..902681 +
EsuBft225_8a-0001-exonagat-exon-54560Ectocarpus subulatus male Bft15bexonScaffold_523 903017..903604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_8a-0001-cdsEsuBft225_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 900335..900526 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_8a-0001-exonagat-three_prime_utr-9020Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 902420..902681 +
EsuBft225_8a-0001-exonagat-three_prime_utr-9021Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 903017..903604 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft225_8a-0001 ID=EsuBft225_8a-0001|Name=EsuBft225_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1474bp|location=Sequence derived from alignment at Scaffold_523:900335..903604+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCCGCACTACGATGCTTCTCAACAGGGAGCAGTATTAGAGCGCG
TGGGATGAATATTGACGGCAATGCTATTGTCAGCGGCATCAGGTTGTTTT
CAGGAACAACGACTACACGTGGAGGTCGCGGCAGAGCCGGCGGCACAAGG
CCGGCCTTCGAGCTGCTGGACGAGGACATCGAAGAGAGATTTGGAAGTGG
GCCAGGCGGCCAAAAGATCAACAAGGTGCGGAACTGCGTCCAGCTGACCC
ACCTCCCTTCCGGCGTGTCGGTCTCATGCCAAGACTCTCGCGAGCTTCAC
GCCAACCGCCACATCGCTCGGAAACGCCTCAAGGAAAAGGTGGAGTTCCA
GCTGATGGGCGCGGACAGCAAGGTCGGCCGCAGAATAAACAACATCCGGA
ATAAGAAGGCTCGCTCGCAGCGAAAGTCGCGCCTCAAGCACCAAGCAGCA
GCAGCGGCAGCGACATCAGCGAAACAGCCAGAACCGGTGCTCAGCAATGA
CGAAGTGGAGAAGATGATGATGGCCGGTGGCGGCGGTACGGGGCACGCGG
TGGACTCGGCGAGCGAAGTCGACGAGGAGGAGAGTGACTGGGAAGACAGC
GGAAGCAACGAAGCCGGGAGATGAAGGAAAAAAAATGTGGGGTGACGAAG
TTTGTTTCGTTAGTACGCCCCCCCAAGCCATATGTGCGGCGAGATGGCTG
CCGATTCGAAGCGCTCTTCGTTTCTGGCGTCTGGATGGAGGTTGCATTCG
AGGCTGGGCTGGAACGGCACCAGACGCTTCTCGGCATGGAGTAGAGGGAG
GACGGCGCGGTTACCACTGCCGTATCCTTCTACGGGCGGACCGAGGGCGT
GTTTGCCTCTGCTGTTGCTCGGAGGTCGGCTTGGCGAAACGGAAAACATC
TACGTCAATCAGACGGTGGCAAAGCGCATCCCGCCTCTGGCACTACGTCC
TGGACCAGTCCTGGTGGAACGGTCCGTTATTTTTGAAGTAGCATTTGGCC
AAAGTCGGCAGGTAGGCTTCGCGAGAAGAGGTTTAAGAGAACCGGTTCGA
ACTCAACGCTGCTGCTATTGCTGCTGCTGCTGTGTTCTTCCCGTTGCCGA
TAAGCCAATGGGCGCGGATGTGTTTTGTTACCGTCATCTTTGTTAATTGG
TGTTTTCTGTGGCTTGTTTGGACTATTATGTTGTGCTATCTGGGCCCGGA
CCAAGCGCCGCGCTGCTCGAATGATGGTGAAAATTTCCTTCCCTGTTGTG
TGTTTGACCTGCTCAGCTTCCTTTCCGTGTCTGCGTGAAATTTTGGATAC
TGTTACAAATTGAAATGTTGACTCTGCAGGTGTTGTCGCACAGTATGTAT
TCATTCGTTCGCGTTCTTTTTTTTCTTGCCTTCGGCCGGAGAGGCAAGAA
CGCCGGACTCAAAGTGCGAGGTTCCTGTGTGTCGGTTGCACTCAGCAACA
TGGACTGTTGGTGTGTGTGGACCT
back to top

protein sequence of EsuBft225_8a-0001

>EsuBft225_8 ID=EsuBft225_8|Name=EsuBft225_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=207bp
MLSALRCFSTGSSIRARGMNIDGNAIVSGIRLFSGTTTTRGGRGRAGGTR
PAFELLDEDIEERFGSGPGGQKINKVRNCVQLTHLPSGVSVSCQDSRELH
ANRHIARKRLKEKVEFQLMGADSKVGRRINNIRNKKARSQRKSRLKHQAA
AAAATSAKQPEPVLSNDEVEKMMMAGGGGTGHAVDSASEVDEEESDWEDS
GSNEAGR
back to top

mRNA from alignment at Scaffold_523:900335..903604+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft225_8a-0001 ID=EsuBft225_8a-0001|Name=EsuBft225_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3270bp|location=Sequence derived from alignment at Scaffold_523:900335..903604+ (Ectocarpus subulatus male Bft15b)
ATGCTGTCCGCACTACGATGCTTCTCAACAGGGAGCAGTATTAGAGCGCG
TGGGATGAATATTGACGGCAATGCTATTGTCAGCGGCATCAGGTTGTTTT
CAGGAACAACGACTACACGTGGAGGTCGCGGCAGAGCCGGCGGCACAAGG
CCGGCCTTCGAGCTGCTGGACGAGGACATCGAAGAGAGATTTGTCAAGGC
GAGTTCGCCGCAGCGTAACAATCTGCCTAGATAGTCATAGCGTCCAGCCT
CCCTGTACGCCCCGCGTACAGTACGGACATACTCCGGAGTCGAAGACACG
ACAGCTGTATGCGTGAGATCACCTGTCCCTCGGACCCATTGCCAAAGCTC
TACCTCCACGACGAACAGGATGTACCAATCGAGATGTTCTCGGAAAAAGT
TGACGAGGTGTGTCCAACACCGTCGCGTAGCCGAGCTCCGACACCAATCC
ATGGGGTGTGACACCTCGTGTGACCTACGTTTCGCATTTACGTGCAGGAT
GAAATTTATCCGACTGTGAATTCGTGCTTCATCCGACGTAATGAAATGAT
GCGTTTGTGGGCACCACATGTCAGTATATAAGGCTTGGGGCACCTTATCT
CGTGTCGGGCAAACACCCTTTTTACACGTTCGTAGGTATGCAATACATGC
CCTAATCGTCCAACCAAGAACCCCCTGCTACCTTACGTACGTCACGTCAG
CGCTCCGTTGTGACCGCACGTCTACAGCGTACATGAGCGCCACCCTAGCC
GTATCAAAGGCTAGCTTTGGGAGTACAATACGAGTCAAGAACCCTGAATC
CTACCTTTGCCAACGCTGCAGCCAAACCCCCCATCGTGTTCCCCCGGTGG
GAGGGGGTTCAGGTGATTTCCCTTCACCTACCGTAGGTCGCATAAGAAAC
CACAAGCCCAAGAGCGGTTTTTGTTGCTCGATGACTCTTGCATAAACAAA
AACAGCAGTGACGGCCGGCAACGGAGACGTTGGAATCGTATCGTCGGGAG
CTTTTCCAAAGATGTGTCGTTTGACGTAGGCGTCCTCGTCGTTGCGTGTT
GACCAGGGAAGTGGGCCAGGCGGCCAAAAGATCAACAAGGTGCGGAACTG
CGTCCAGCTGACCCACCTCCCTTCCGGCGTGTCGGTCTCATGCCAAGACT
CTCGCGAGCTTCACGCCAACCGCCACATCGCTCGGAAACGCCTCAAGGAA
AAGGTGGAGGGCCCATCTTGGATTTTTGAAGAACGCACTACCACTTCAGA
ACCGCCATTATGGTTCTTGCCGAGGCTGGGATTCTTAATTCCTACATTAG
GGTTATGCTCAAGAATGGTGGTCATAAAAGTTTTAGCGTAGTGATTCTCA
ACCGAGCTCACAAATGGTGCTCAAGTTCTTAAATTTTGGGGGGTTGAGGC
TCAATTTCTCAACTCTTGAGTTCTCAAGTGGTGGCGCTTTCTGTATGCAG
ATTTGCGGCCAGGGAACAAGAGTCGTCCATTTGGGGTCGAGGCTCAATTT
ATTACGTCGTCACGACCGTCCCGCATACGTCATTATATGTAGTTTAGTGT
GGGATCCACGGCTGAGGTGTGCTTCTTGGTCACCTTTTCTTTGTTTCTCG
TGAACCTTTGAGAGTTGTTTTCCTATCTAGACTTTTCTTAAGTGGCGGAC
CGCAACTTCCGTGCATTTGTGTATCTTTTTTACGACCGGGGCCCATACAC
CGGTGCGGGTACGCATCGGTCGAGTTCCGCCATTGCATGATGTTGAGTCA
GTGACCCTCCCCTGCTTGCGCGCGCACGCACGCACGCACGTCTTCCTTAG
GTGGAGTTCCAGCTGATGGGCGCGGACAGCAAGGTCGGCCGCAGAATAAA
CAACATCCGGAATAAGAAGGCTCGCTCGCAGCGAAAGTCGCGCCTCAAGC
ACCAAGCAGCAGCAGCGGCAGCGACATCAGCGAAACAGCCAGAACCGGTG
CTCAGCAATGACGAAGTGGAGAAGATGATGATGGCCGGTGGCGGCGGTAC
GGGGCACGCGGTGGACTCGGCGAGCGAAGTCGACGAGGAGGAGAGTGACT
GGGAAGACAGCGGAAGCAACGAAGCCGGGAGATGAAGGAAAAAAAATGTG
GGGTGACGAAGTTTGTTTCGTTAGTACGCCCCCCCAAGCCATATGTGCGG
CGAGATGGCTGCCGATTCGAAGCGCTCTTCGTTTCTGGCGTCTGGATGGA
GGTTGCATTCGAGGCTGGGCTGGAACGGCACCAGACGCTTCTCGGCATGG
AGTAGAGGGAGGACGGCGCGGTTACCACTGCCGTATCCTTCTACGGGCGG
ACCGAGGGCGTGTTTGCCTCTGCTGTTGCTCGGAGGTCGGCTTGGCGGTA
GGTAGCCCTTGAACCATCATTTCCGTTGTTACGTGTATGACATTAAAACT
GACATGCCAGTTATGCGTGTGCGTGCAAACGGCGAAACCATGGACAGTTG
CCCCAGAGGTGTCAACGTTGATAATGGAAGCGAAAGTTCTCCGAAAACAC
TTCTTTTTGGTTGAGGGCCTTCCAATGACACAAGAATATCGACCCACAGT
TCACGTTCACGACCGAAATCCGCCGCAGTGTGGGGCGCCGACACAGTTGT
GGTAGGATGACACGTGCGAGAACTCATCCATGCCCCCTCCCCTCCCGCTG
GTACTTCCGCGCGCTCACACATGGTACTGCAGAAACGGAAAACATCTACG
TCAATCAGACGGTGGCAAAGCGCATCCCGCCTCTGGCACTACGTCCTGGA
CCAGTCCTGGTGGAACGGTCCGTTATTTTTGAAGTAGCATTTGGCCAAAG
TCGGCAGGTAGGCTTCGCGAGAAGAGGTTTAAGAGAACCGGTTCGAACTC
AACGCTGCTGCTATTGCTGCTGCTGCTGTGTTCTTCCCGTTGCCGATAAG
CCAATGGGCGCGGATGTGTTTTGTTACCGTCATCTTTGTTAATTGGTGTT
TTCTGTGGCTTGTTTGGACTATTATGTTGTGCTATCTGGGCCCGGACCAA
GCGCCGCGCTGCTCGAATGATGGTGAAAATTTCCTTCCCTGTTGTGTGTT
TGACCTGCTCAGCTTCCTTTCCGTGTCTGCGTGAAATTTTGGATACTGTT
ACAAATTGAAATGTTGACTCTGCAGGTGTTGTCGCACAGTATGTATTCAT
TCGTTCGCGTTCTTTTTTTTCTTGCCTTCGGCCGGAGAGGCAAGAACGCC
GGACTCAAAGTGCGAGGTTCCTGTGTGTCGGTTGCACTCAGCAACATGGA
CTGTTGGTGTGTGTGGACCT
back to top

Coding sequence (CDS) from alignment at Scaffold_523:900335..903604+

>EsuBft225_8a-0001 ID=EsuBft225_8a-0001|Name=EsuBft225_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=624bp|location=Sequence derived from alignment at Scaffold_523:900335..903604+ (Ectocarpus subulatus male Bft15b)
ATGCTGTCCGCACTACGATGCTTCTCAACAGGGAGCAGTATTAGAGCGCG
TGGGATGAATATTGACGGCAATGCTATTGTCAGCGGCATCAGGTTGTTTT
CAGGAACAACGACTACACGTGGAGGTCGCGGCAGAGCCGGCGGCACAAGG
CCGGCCTTCGAGCTGCTGGACGAGGACATCGAAGAGAGATTTGGAAGTGG
GCCAGGCGGCCAAAAGATCAACAAGGTGCGGAACTGCGTCCAGCTGACCC
ACCTCCCTTCCGGCGTGTCGGTCTCATGCCAAGACTCTCGCGAGCTTCAC
GCCAACCGCCACATCGCTCGGAAACGCCTCAAGGAAAAGGTGGAGTTCCA
GCTGATGGGCGCGGACAGCAAGGTCGGCCGCAGAATAAACAACATCCGGA
ATAAGAAGGCTCGCTCGCAGCGAAAGTCGCGCCTCAAGCACCAAGCAGCA
GCAGCGGCAGCGACATCAGCGAAACAGCCAGAACCGGTGCTCAGCAATGA
CGAAGTGGAGAAGATGATGATGGCCGGTGGCGGCGGTACGGGGCACGCGG
TGGACTCGGCGAGCGAAGTCGACGAGGAGGAGAGTGACTGGGAAGACAGC
GGAAGCAACGAAGCCGGGAGATGA
back to top