EsuBft225_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft225_4a-0001
Unique NameEsuBft225_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:967324..969869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3Y7
ProteomeIdEsuBft225_4
Protein domainsPTHR20870
Protein domainsIPR028784
Ownerapollo_admin@sb-roscoff.fr
Notebardet-biedl syndrome 1 protein os:homo sapiens gn:bbs1 pe:1 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1025
Hectar predicted targeting categoryother localisation
Evalue3.46e-120
EggNOG OGs2CMUT@1|root,2QS2X@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameBBS1
KEGG koko:K16746
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001085,GO:0001103,GO:0001501,GO:0001664,GO:0001764,GO:0001894,GO:0001895,GO:0003008,GO:0003352,GO:0003356,GO:0003674,GO:0005102,GO:0005113,GO:0005119,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0005930,GO:0006629,GO:0006810,GO:0006892,GO:0006893,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007606,GO:0007608,GO:0007610,GO:0007635,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008594,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010817,GO:0010970,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016358,GO:0016477,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021591,GO:0021756,GO:0021761,GO:0021766,GO:0021987,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030534,GO:0030705,GO:0030900,GO:0031090,GO:0031175,GO:0031253,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035721,GO:0036064,GO:0040011,GO:0040012,GO:0042048,GO:0042073,GO:0042221,GO:0042445,GO:0042461,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045444,GO:0045494,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0051179,GO:0051216,GO:0051219,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060170,GO:0060249,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060632,GO:0061351,GO:0061448,GO:0061512,GO:0061951,GO:0065007,GO:0065008,GO:0070491,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097014,GO:0097458,GO:0098588,GO:0098590,GO:0098876,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:1905515,GO:1990778,GO:2000145
DescriptionBardet-biedl syndrome 1
COG categoryS
BRITEko00000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0001895
GO0044464
GO0034464
GO0035058
GO0015031
GO0005102
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft225_4aEsuBft225_4aEctocarpus subulatus male Bft15bgeneScaffold_523 967324..969869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_4a-0001EsuBft225_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 967324..969768 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_4a-0001-exonagat-exon-54521Ectocarpus subulatus male Bft15bexonScaffold_523 967324..967548 -
EsuBft225_4a-0001-exonagat-exon-54517Ectocarpus subulatus male Bft15bexonScaffold_523 967802..967908 -
EsuBft225_4a-0001-exonagat-exon-54519Ectocarpus subulatus male Bft15bexonScaffold_523 968320..968460 -
EsuBft225_4a-0001-exonagat-exon-54520Ectocarpus subulatus male Bft15bexonScaffold_523 968790..968907 -
EsuBft225_4a-0001-exonagat-exon-54522Ectocarpus subulatus male Bft15bexonScaffold_523 969212..969326 -
EsuBft225_4a-0001-exonEsuBft225_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 969491..969549 -
EsuBft225_4a-0001-exonagat-exon-54518Ectocarpus subulatus male Bft15bexonScaffold_523 969610..969869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_4a-0001-cdsEsuBft225_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 967324..967548 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft225_4a-0001-exonagat-five_prime_utr-5815Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 969769..969869 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft225_4a-0001 ID=EsuBft225_4a-0001|Name=EsuBft225_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1025bp|location=Sequence derived from alignment at Scaffold_523:967324..969869- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCTGAATCAGTACACCTTCGCATATGGCGTCAGCGGCAGGATACTGGTG
GTTCGAATCTCCTTGGGTGCACACTTTTTCTCCTGACTTGGACATTTTCC
CATGGACACAATGTGTGTCAGTCCTGAGAACACCTCTTGGAGTCGATATT
ACAAAGAACCTTGTGACACTTCCATCGAATTACCCATCCTGGCCACAAGA
GGTTCCCAGTTGAGGGTAATTCTGTGGGTGGAGAGTGTTACGGAGGACCC
GATTCGCAGGGATACTGGTGGTTCGAATCTCCTTGGGTGCACACTTTATG
CGAAGGTGTACCGATTCAGGACTGACGCAACTTGTGTCCTTGGGAAAATA
TCCAAGTTAGGAGAAAAAGTGTGCACCCAAGGAGATTCGGACCAGTATCC
AGCTTACACCATATGCGAAGGTGTACCGATTCAGGTGTACGCCGCAACTA
CGGACAACAACCTCCATGCTTACCACCTCAAAGGGCGGAGGGATTTCTCT
ATCAAGATGCCGTCCCTCGTGGTTCAGCTGGAAGCGATGGAGACCAGGTG
TGCCCTGGCGGACGGCAACGTTCGCCTGTACGATGCCGAGAAGAACCTGC
TGCACACACTAAAGACGCAGGAGCCGATAGCGGCTCTGCGATTTGGACCC
TACGCCAGAGAAGACGGCGCGCTCGCCGTCGTGTCCGTAACAGGGAAGCT
GACCATATTCATGCTGAATCGCAAGGCTGATCTAAGGAAGCCCAAAACGC
TTGGGGCGGCCACGGCTGGCTATCCGCCGGAACAGGACATCCCGCTCAAG
GTCCCGAAGAAAACCAAGCTGTACGTGGAGCAGACGCAGCGCGCGAAGCT
TCAGGCCGGGGAGATCCACCGGGCGTTCCAGAAGGACCTCTGCCTCCTCA
GGCTCACCGCCGCCCGGGCGTATGTTAAGACCATCACGGACGGCCGGCAG
GGAGTGAGCGCGGTCGGGGCGGCGGCATCGTTAAGGCTGCATGCCCAGTG
CCAGGGGCTGGTGAGATGGGACTGA
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protein sequence of EsuBft225_4a-0001

>EsuBft225_4 ID=EsuBft225_4|Name=EsuBft225_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=307bp
MDTMCVSPENTSWSRYYKEPCDTSIELPILATRGSQLRVILWVESVTEDP
IRRDTGGSNLLGCTLYAKVYRFRTDATCVLGKISKLGEKVCTQGDSDQYP
AYTICEGVPIQVYAATTDNNLHAYHLKGRRDFSIKMPSLVVQLEAMETRC
ALADGNVRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKL
TIFMLNRKADLRKPKTLGAATAGYPPEQDIPLKVPKKTKLYVEQTQRAKL
QAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQC
QGLVRWD
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mRNA from alignment at Scaffold_523:967324..969869-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft225_4a-0001 ID=EsuBft225_4a-0001|Name=EsuBft225_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2546bp|location=Sequence derived from alignment at Scaffold_523:967324..969869- (Ectocarpus subulatus male Bft15b)
ACCTGAATCAGTACACCTTCGCATATGGCGTCAGCGGCAGGATACTGGTG
GTTCGAATCTCCTTGGGTGCACACTTTTTCTCCTGACTTGGACATTTTCC
CATGGACACAATGTGTGTCAGTCCTGAGAACACCTCTTGGAGTCGATATT
ACAAAGAACCTTGTGACACTTCCATCGAATTACCCATCCTGGCCACAAGA
GGTTCCCAGTTGAGGGTAATTCTGTGGGTGGAGAGTGTTACGGAGGACCC
GATTCGCAGGGTATCTGTCGATTGACTTTTACCTGAATCGGTACACCTTC
GCATATGGCGTCAGCGGCAGGATACTGGTGGTTCGAATCTCCTTGGGTGC
ACACTTTATGCGAAGGTGTACCGATTCAGGTAAAAGTCAATCGACAGATA
CCCTGCGAATCGGGTCCTCCTTAACACTCTCCACCCACAGAATTTACCCT
CAACTGGGAACCTCTTGTGGCCAGGATGGGTAATTCGATGGAAGTGTCAC
AAGGTTCTTTCTTCGTAGGATCGACTCCAAGAGGTGTCCTCAGGACTGAC
GCAACTTGTGTCCTTGGGAAAATATCCAAGTTAGGAGAAAAAGTGTGCAC
CCAAGGAGATTCGGACCAGTATCCAGCTTACACCATATGCGAAGGTGTAC
CGATTCAGGTAAAAGTCAATCGACGGATACCTTGCGAATCGGGTCCTCCT
TATCATGTATTTGTTGTACTAATACGAACCACATGTCAAAGCTTCAGGTT
CCAACTCGAAAAAACCATGGTGTATTTGGCTTTCAACCATTTCGTTAGCT
TCTTGGCTGGCCCAGCTTGTAGCACTATCGATTCGATCTCCTCAACTACT
GCTAGAAAATAGCCGTTGGCCTGTGCGAGCTATGCGCGTCATCCCCCCAA
AGGCTGCTACAACATCTCCCTCTTCCTTCATCCCTCACATTATCCATGGC
GCTGGGTGGTAGGTGTACGCCGCAACTACGGACAACAACCTCCATGCTTA
CCACCTCAAAGGGCGGAGGGATTTCTCTATCAAGATGCCGTCCCTCGTGG
TTCAGCTGGAAGCGATGGAGACCAGGTGTGGTGCTTCCAGCCAGGACAAG
TCCAATGTAGAAATTGGAACCAATCGGCCGACTAAACTTACTCGCGCACG
ACCGGTAGACGGTCGCGTGTACTGTAGATTGGGCTCTCGGCGTGTTCACT
ATTTATTGTCCATAATTTCAAAAAGAAGATGTAGTTGAAGTCCACCACGA
AGATGTGAGGTTGTTATTGTTGTTGTTGTTGTTGTTGTTTTTGTTGTCGT
CGTCGTCGTCGTCGTCGTCGTTGCTGTTGATAGTGCTACGGCCGTCGTCT
GAATGCTCGAGGATGATGCAACCCGAAACGTTCAAGGTCGACCACGTGCC
TCTTGGTAGCCCTGGCGGACGGCAACGTTCGCCTGTACGATGCCGAGAAG
AACCTGCTGCACACACTAAAGACGCAGGAGCCGATAGCGGCTCTGCGATT
TGGACCCTACGCCAGAGAAGACGGCGCGCTCGCCGTCGTGTCCGTAACAG
GTACGACAAGAACAGTCGATAGAATGTTCGCATGCTGTACGCGTGTGGTT
GGGGTACTTGATTCCTCTTCATAGGTTGCCGCCGTCGCTTCCCCGTGATG
AGGGTGTTGGAGATAATGGGGAGAAGTGTTTCGGGTTTGTCTGCCCCTGC
ATCCGTGTTTATTCGCGATGTCATCTGTAACACCATGCACCATGCGAAGG
AGAAGGCCAGCGTCGACAACAATCGCCTGGTTGGGATTGCTCTGGTGCTC
CGTGCTATGTGTGGAACATCAACGACCTGATCATTGCCCCCTCAAATACT
GACGCTTCATTGTTTTTGCACTCACGCAAATATGATTCCAAAAAAACTTT
CACTTGTTTAATTAATACCGTCTGTTCGTCGCGGTAACTCCCTGTGTGCC
GGCGTGCGCAGGGAAGCTGACCATATTCATGCTGAATCGCAAGGCTGATC
TAAGGAAGCCCAAAACGCTTGGGGCGGCCACGGCTGGCTATCCGCCGGAA
CAGGACATCCCGCTCAAGGTTCTGTGTCCCTTTCTCATTATGTTGTATTT
TGTCGCGCATTGCGTAGTGTCGTGGGCGGTGCTGCCGCGGAGAGCCGACA
AGTTTGGTGGGATTTAGCACGTGGCCTAGACTATTGCTCCGTGGGGAAAA
ACGCTGTCCATCGCAAGCATGAAACCTACCGCAGAGGACCCTACCCATCA
CCTTGATCGTAAAGGCGCGTGGTACTCGACGACCCACACAAACGCCGACG
CGGCACAAAAAAATAACGCAGGTCCCGAAGAAAACCAAGCTGTACGTGGA
GCAGACGCAGCGCGCGAAGCTTCAGGCCGGGGAGATCCACCGGGCGTTCC
AGAAGGACCTCTGCCTCCTCAGGCTCACCGCCGCCCGGGCGTATGTTAAG
ACCATCACGGACGGCCGGCAGGGAGTGAGCGCGGTCGGGGCGGCGGCATC
GTTAAGGCTGCATGCCCAGTGCCAGGGGCTGGTGAGATGGGACTGA
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Coding sequence (CDS) from alignment at Scaffold_523:967324..969869-

>EsuBft225_4a-0001 ID=EsuBft225_4a-0001|Name=EsuBft225_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=924bp|location=Sequence derived from alignment at Scaffold_523:967324..969869- (Ectocarpus subulatus male Bft15b)
ATGGACACAATGTGTGTCAGTCCTGAGAACACCTCTTGGAGTCGATATTA
CAAAGAACCTTGTGACACTTCCATCGAATTACCCATCCTGGCCACAAGAG
GTTCCCAGTTGAGGGTAATTCTGTGGGTGGAGAGTGTTACGGAGGACCCG
ATTCGCAGGGATACTGGTGGTTCGAATCTCCTTGGGTGCACACTTTATGC
GAAGGTGTACCGATTCAGGACTGACGCAACTTGTGTCCTTGGGAAAATAT
CCAAGTTAGGAGAAAAAGTGTGCACCCAAGGAGATTCGGACCAGTATCCA
GCTTACACCATATGCGAAGGTGTACCGATTCAGGTGTACGCCGCAACTAC
GGACAACAACCTCCATGCTTACCACCTCAAAGGGCGGAGGGATTTCTCTA
TCAAGATGCCGTCCCTCGTGGTTCAGCTGGAAGCGATGGAGACCAGGTGT
GCCCTGGCGGACGGCAACGTTCGCCTGTACGATGCCGAGAAGAACCTGCT
GCACACACTAAAGACGCAGGAGCCGATAGCGGCTCTGCGATTTGGACCCT
ACGCCAGAGAAGACGGCGCGCTCGCCGTCGTGTCCGTAACAGGGAAGCTG
ACCATATTCATGCTGAATCGCAAGGCTGATCTAAGGAAGCCCAAAACGCT
TGGGGCGGCCACGGCTGGCTATCCGCCGGAACAGGACATCCCGCTCAAGG
TCCCGAAGAAAACCAAGCTGTACGTGGAGCAGACGCAGCGCGCGAAGCTT
CAGGCCGGGGAGATCCACCGGGCGTTCCAGAAGGACCTCTGCCTCCTCAG
GCTCACCGCCGCCCGGGCGTATGTTAAGACCATCACGGACGGCCGGCAGG
GAGTGAGCGCGGTCGGGGCGGCGGCATCGTTAAGGCTGCATGCCCAGTGC
CAGGGGCTGGTGAGATGGGACTGA
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