EsuBft225_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft225_23a-0001
Unique Name	EsuBft225_23a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:738006..739517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft225_23
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	151
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft225_23a	EsuBft225_23a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 738006..739517 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_23a-0001-exon	EsuBft225_23a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 738006..739517 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_23a-0001-cds	EsuBft225_23a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 738006..739313 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_23a-0001-exon	agat-three_prime_utr-9008	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 739314..739517 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_23a-0001	EsuBft225_23	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 738006..739313 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:738006..739517+
coding sequence from alignment at Scaffold_523:738006..739517+

spliced messenger RNA

>EsuBft225_23a-0001 ID=EsuBft225_23a-0001|Name=EsuBft225_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1512bp|location=Sequence derived from alignment at Scaffold_523:738006..739517+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATTAACAAGATACAACTTGA
AAAGTTCATGGAGTCTCTGGAGCACCTCCCCCAGGAGGCGGTACCACCCA
CGCGGGACAACCCCTACGGAGGTCAAGAGGCCAGGAACATGGCATACGCA
CGAACGAGAAGCTCGCAAGGGCAAGGGGGGCACGCGTTCCTGAGAGCGGC
TCCCACCGACCGAGCTCGAGAGATTCCATCGAACGAATTCGTCTACGCGA
CGAGACGCGCCTTGGGAGTTGAAGAATTCTTGGCGGAAAGATGTCCCAGG
TGCCACAGAGGCAGGGAAGGCGAGATCATCACAACGGTGCACGCAAGGAC
CTGTCGAAGGGATGGAGCACAGGTCAACATGCACGAGCCGTTAAAATACG
CACTATCGAGAGCACTCAACGGCCTTCGCGTCAAACACGACGTTGAAAGC
GGGGCACCGTTCACGGGGGAAAGAAACCTGAGCATGGACATCGTCATCAG
GCCAGGAGCCCTCACGAACGCATCTTCTCCGGGGTACCGCAACAAAGGAA
TACTCCTCGATGTCACACACGCAGACCCGCAAGCACAGGTACACTTGCGG
AACGGCAGCGCGACCAGCGATGGAATCGCAGCCCAAGCATCCGAGGCGCG
AAAGCGTCAGCACTACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCA
GCTTTAAACTTACCACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAG
GAGGGTTACGAGTTCATCGATGAACTTGCGACACATGCCGTGGGAGGAAG
GGACGGAGGAACGATGGCTCTGAAAGGAGTCTTCAAGGAACGACTTCTTC
AGATCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGG
TACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAG
ATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACG
CATCGTAGAACGCGTTTTCGTTTGAAGTTGACGTCTTGTTTGAGAGTAGA
TGTGACAGATTTGCGTAGAATAGGGTAAGATGTTATCATGAACGGAGATG
AAAGGGCTTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGG
ATTTCAGCTTTTACAAGCGGACATCAACGCAGTAGTACTTTAGCAAGCTT
ACGAACGCATAT

protein sequence of EsuBft225_23a-0001

>EsuBft225_23 ID=EsuBft225_23|Name=EsuBft225_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=435bp
MRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKEL
NQEHAISVEILKGILPPSWVEWALEPTGETGRRQPTVAELAAHDGESTTP
RKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYA
RTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPR
CHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVES
GAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLR
NGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGE
EGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQR
YKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDAS

mRNA from alignment at Scaffold_523:738006..739517+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft225_23a-0001 ID=EsuBft225_23a-0001|Name=EsuBft225_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1512bp|location=Sequence derived from alignment at Scaffold_523:738006..739517+ (Ectocarpus subulatus male Bft15b)
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATTAACAAGATACAACTTGA
AAAGTTCATGGAGTCTCTGGAGCACCTCCCCCAGGAGGCGGTACCACCCA
CGCGGGACAACCCCTACGGAGGTCAAGAGGCCAGGAACATGGCATACGCA
CGAACGAGAAGCTCGCAAGGGCAAGGGGGGCACGCGTTCCTGAGAGCGGC
TCCCACCGACCGAGCTCGAGAGATTCCATCGAACGAATTCGTCTACGCGA
CGAGACGCGCCTTGGGAGTTGAAGAATTCTTGGCGGAAAGATGTCCCAGG
TGCCACAGAGGCAGGGAAGGCGAGATCATCACAACGGTGCACGCAAGGAC
CTGTCGAAGGGATGGAGCACAGGTCAACATGCACGAGCCGTTAAAATACG
CACTATCGAGAGCACTCAACGGCCTTCGCGTCAAACACGACGTTGAAAGC
GGGGCACCGTTCACGGGGGAAAGAAACCTGAGCATGGACATCGTCATCAG
GCCAGGAGCCCTCACGAACGCATCTTCTCCGGGGTACCGCAACAAAGGAA
TACTCCTCGATGTCACACACGCAGACCCGCAAGCACAGGTACACTTGCGG
AACGGCAGCGCGACCAGCGATGGAATCGCAGCCCAAGCATCCGAGGCGCG
AAAGCGTCAGCACTACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCA
GCTTTAAACTTACCACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAG
GAGGGTTACGAGTTCATCGATGAACTTGCGACACATGCCGTGGGAGGAAG
GGACGGAGGAACGATGGCTCTGAAAGGAGTCTTCAAGGAACGACTTCTTC
AGATCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGG
TACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAG
ATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACG
CATCGTAGAACGCGTTTTCGTTTGAAGTTGACGTCTTGTTTGAGAGTAGA
TGTGACAGATTTGCGTAGAATAGGGTAAGATGTTATCATGAACGGAGATG
AAAGGGCTTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGG
ATTTCAGCTTTTACAAGCGGACATCAACGCAGTAGTACTTTAGCAAGCTT
ACGAACGCATAT

Coding sequence (CDS) from alignment at Scaffold_523:738006..739517+

>EsuBft225_23a-0001 ID=EsuBft225_23a-0001|Name=EsuBft225_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1308bp|location=Sequence derived from alignment at Scaffold_523:738006..739517+ (Ectocarpus subulatus male Bft15b)
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATTAACAAGATACAACTTGA
AAAGTTCATGGAGTCTCTGGAGCACCTCCCCCAGGAGGCGGTACCACCCA
CGCGGGACAACCCCTACGGAGGTCAAGAGGCCAGGAACATGGCATACGCA
CGAACGAGAAGCTCGCAAGGGCAAGGGGGGCACGCGTTCCTGAGAGCGGC
TCCCACCGACCGAGCTCGAGAGATTCCATCGAACGAATTCGTCTACGCGA
CGAGACGCGCCTTGGGAGTTGAAGAATTCTTGGCGGAAAGATGTCCCAGG
TGCCACAGAGGCAGGGAAGGCGAGATCATCACAACGGTGCACGCAAGGAC
CTGTCGAAGGGATGGAGCACAGGTCAACATGCACGAGCCGTTAAAATACG
CACTATCGAGAGCACTCAACGGCCTTCGCGTCAAACACGACGTTGAAAGC
GGGGCACCGTTCACGGGGGAAAGAAACCTGAGCATGGACATCGTCATCAG
GCCAGGAGCCCTCACGAACGCATCTTCTCCGGGGTACCGCAACAAAGGAA
TACTCCTCGATGTCACACACGCAGACCCGCAAGCACAGGTACACTTGCGG
AACGGCAGCGCGACCAGCGATGGAATCGCAGCCCAAGCATCCGAGGCGCG
AAAGCGTCAGCACTACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCA
GCTTTAAACTTACCACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAG
GAGGGTTACGAGTTCATCGATGAACTTGCGACACATGCCGTGGGAGGAAG
GGACGGAGGAACGATGGCTCTGAAAGGAGTCTTCAAGGAACGACTTCTTC
AGATCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGG
TACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAG
ATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACG
CATCGTAG