EsuBft225_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft225_20a-0001
Unique Name	EsuBft225_20a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:750282..755385 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G3Z8
ProteomeId	EsuBft225_20
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	TRANSMEMBRANE
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	8
Max annot lvl	2759\|Eukaryota
Length	146
Hectar predicted targeting category	signal anchor
Evalue	2.14e-215
EggNOG OGs	28KJH@1\|root,2QT0Y@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft225_20a	EsuBft225_20a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 750282..755385 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_20a-0001	EsuBft225_20	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 750306..755217 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_20a-0001-exon	agat-exon-54650	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 750282..750494 +
EsuBft225_20a-0001-exon	EsuBft225_20a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 751086..751244 +
EsuBft225_20a-0001-exon	agat-exon-54649	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 751369..751716 +
EsuBft225_20a-0001-exon	agat-exon-54647	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 752127..752303 +
EsuBft225_20a-0001-exon	agat-exon-54648	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 752736..752809 +
EsuBft225_20a-0001-exon	agat-exon-54653	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 753181..753325 +
EsuBft225_20a-0001-exon	agat-exon-54651	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 753946..754081 +
EsuBft225_20a-0001-exon	agat-exon-54652	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 755174..755385 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_20a-0001-exon	agat-five_prime_utr-5807	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 750282..750305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_20a-0001-cds	EsuBft225_20a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 750306..750494 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft225_20a-0001-exon	agat-three_prime_utr-9005	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 755218..755385 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:750282..755385+
coding sequence from alignment at Scaffold_523:750282..755385+

spliced messenger RNA

>EsuBft225_20a-0001 ID=EsuBft225_20a-0001|Name=EsuBft225_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1464bp|location=Sequence derived from alignment at Scaffold_523:750282..755385+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCCTCAGTCCTTGAATCTAAACAATGCCTATGGGCGAGGACCCACGGCA
TGGGCTGCTTGTGGCGCTGGTTGTGGGCCTGGTCGGCGTGCTGCTCCTGA
TCTTCGCGGCGCTGGCGGTTGCACCCGTGCTCGTGATCGTGCTGGGGCTG
ATGACGTACGTGGTGTGGTGGTATGTCTCACGGGAAGACACCTCCTACAT
GCACCACGCGCAGGAACACGAGAACCGGTTCTGGACTACGGTGGCGTTTT
GCTTCTCGGGGGCGTTGGTGTTCGTTCATGACAGTCCCGTGGCCTTGGGG
CAATGGTCCCCCGTGCTGGGGTTCCTTTTCGTCATGATGTTCACCTTCTC
GGTGCACAGCTACGATCGACAGCACGATGAGATCCGTTCATTGGAGTTGG
GCGTTGGGCGAAGCCTCGCAAGCGTGTCGGACAGCGGCGCTTGGGTCCCC
GCCGATTACCCTTCCGTCCGGGCTTCGCGGCCCCTCGGCGGGCCCTGTCC
CTCCTCTGCTCACACCCGCCGCCCTCGGCGTGCTCGTTCGGGTTCCCAGC
TCCACCGGTCGAGAATCGGGCGTGCGCCTAACTTTCGGCCATCGGTGGAA
AGCAGCACTATGCTTCACAGCAGCGTTCAGGATAAGTGCCGGCGCATCTC
CCTGTGCCTCAGCAAGCTCGACAACCGGCTCGTGGCAACCAACCTCAACC
ACATGCTCTGGGCGGATATGGTGCAAAACTTGGAGAAGGAGATCGTGAAC
ATTCTCAGCGATGCAGACCCGTCGGAGCTGAACTACATGCTGCCCAAGAT
CGGGCTAGGCCTACTGTTCTACAAGGTCAAGGACCACGCGCCAATCAACC
TGCACAGGACGAGACTGCTCAACGTGCTCGCCGACAACCGCATATCGGAC
CTTAACGTGACATCGCGAGCTCTCGTGCTCGACGCTCTCCAGCAGCTAAA
GCTTTCTGCTCACAAAGACAGCGAGACGTACGCGAAGAAAATCATCTTGA
AGACGAAAGGAGACGACTTGTCGGAGCTGAAGAGCCTAACCGACGCGAAG
GGCGACATCCACTCCATACACAAGCTCGTCTATCGCGACATCAAGGACGT
GGCTGTCAGAGAGGAGGTGCTGAAGCACATCGCCAACCAGGCCAAGGTGC
AGGCGGCGCACATGCGACTCGGGACCCGCACGGGGAGCAGGCGCAGCGGG
AAGGCGTGGCGCAAGATCCTCTCCGACGTCGACGACACGTTGACCTCATC
AGCACGAAATGCATCGACACTGCTGTTATGTGAAGTTCTAGTGTAGGCCT
GGGCAGACTTTCTTTCCCGCGACACGTGCGGTTTCACCCTGTCGAGCCCA
CAAGAGTTTTGTAAAATAAGATCGTTGCATTTCGGGCTACAGCAGTGCCT
CACCAAGGCTAGTCGACGGCGAAAGGGAAACCCACATCATGCACCCGAGT
AGCCTGTGACCGGC

protein sequence of EsuBft225_20a-0001

>EsuBft225_20 ID=EsuBft225_20|Name=EsuBft225_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=423bp
MPMGEDPRHGLLVALVVGLVGVLLLIFAALAVAPVLVIVLGLMTYVVWWY
VSREDTSYMHHAQEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPVLGF
LFVMMFTFSVHSYDRQHDEIRSLELGVGRSLASVSDSGAWVPADYPSVRA
SRPLGGPCPSSAHTRRPRRARSGSQLHRSRIGRAPNFRPSVESSTMLHSS
VQDKCRRISLCLSKLDNRLVATNLNHMLWADMVQNLEKEIVNILSDADPS
ELNYMLPKIGLGLLFYKVKDHAPINLHRTRLLNVLADNRISDLNVTSRAL
VLDALQQLKLSAHKDSETYAKKIILKTKGDDLSELKSLTDAKGDIHSIHK
LVYRDIKDVAVREEVLKHIANQAKVQAAHMRLGTRTGSRRSGKAWRKILS
DVDDTLTSSARNASTLLLCEVLV

mRNA from alignment at Scaffold_523:750282..755385+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft225_20a-0001 ID=EsuBft225_20a-0001|Name=EsuBft225_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5104bp|location=Sequence derived from alignment at Scaffold_523:750282..755385+ (Ectocarpus subulatus male Bft15b)
TCCCTCAGTCCTTGAATCTAAACAATGCCTATGGGCGAGGACCCACGGCA
TGGGCTGCTTGTGGCGCTGGTTGTGGGCCTGGTCGGCGTGCTGCTCCTGA
TCTTCGCGGCGCTGGCGGTTGCACCCGTGCTCGTGATCGTGCTGGGGCTG
ATGACGTACGTGGTGTGGTGGTATGTCTCACGGGAAGACACCTCCTACAT
GCACCACGCGCAGGTGCGTTGCTGTCGTCGTATTTTGCTGCTGGTTTCTC
ACGTGTGGGACGTGTGGGACGTAGCCGAGAGCCAAGCCGCCGCTGGTGCT
TGAGCTGGAGGGTTTCGGATGTTGGTACTTGTATGTGTTGGTATCGAAGC
GGTAAGGTTTTGGTAAATTGTGCTGCTGTGTCGAGCGCCAAACGCGTGGA
CGAAAGGAGCGTTGCGGTTTTGTCTATATAGCTTGGTCGTCGATAGGGGG
TAGGGAGCGTCACCGCTTTTCTCTCAGCGGGGACGACTGAATTGGATAAC
CCTCGCGCAACAACTACACATTGGCATGCGACTTTCAATTCATCGAGCTG
TGGTACCGAGGATCGGTTCTGAACGATGATATTTCAGGTAATCCTCTCTT
AAAGGAGCAGACGGTAAATATTGCAGTTTTGTACCTGGCGCAACCATGCT
TCATGTTTCGAGTGATTTCGGTGCCTAACATGCTGTGAAATCCAAGTCGA
TGTCACTTTCCCGAACGAATGCGTTTCAATCTGTACAAAGTCCTTGTCTA
CACGCTGCTCTCGCGCCCTTGTTTTGGTATTGTTCCTGCGTGGTGCTCTT
TTAGGAACACGAGAACCGGTTCTGGACTACGGTGGCGTTTTGCTTCTCGG
GGGCGTTGGTGTTCGTTCATGACAGTCCCGTGGCCTTGGGGCAATGGTCC
CCCGTGCTGGGGTTCCTTTTCGTCATGATGTTCACCTTCTCGGTGCACAG
CTACGATCGACAGGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCCGCCGAG
AGGGAAACTGAGGGAGAGACGGGACCTAGAGAGACAGATACAGGCAGACG
AGGAGAGGAGGGGTAGATGGGAAGGGTAAACTCATAGCACGATGAGATCC
GTTCATTGGAGTTGGGCGTTGGGCGAAGCCTCGCAAGCGTGTCGGACAGC
GGCGCTTGGGTCCCCGCCGATTACCCTTCCGTCCGGGCTTCGCGGCCCCT
CGGCGGGCCCTGTCCCTCCTCTGCTCACACCCGCCGCCCTCGGCGTGCTC
GTTCGGGTTCCCAGCTCCACCGGTCGAGAATCGGGCGTGCGCCTAACTTT
CGGCCATCGGTGGAAAGCAGCACTATGCTTCACAGCAGCGTTCAGGATAA
GTGCCGGCGCATCTCCCTGTGCCTCAGCAAGCTCGACAACCGGCTCGTGG
CAACCAACCTCAACCACATGCTCTGGGCGGATATGGTGAGCTAAGTAGGC
TTTTGTCTGTGCGAGCTGTGTGGGACTTCCTGATCTGACCTACATAGGGC
AGCACCACGTGTTTCGGGAAGCCAGACCCATTTGGACGAGCTGCATGCAT
GCGGGTGTCCAGGAGGAATTGGCGTATTCGTTGCCACCTACGGGTATTGT
GACGAGTTTACCGTCCGATCGGCCCCTGAGAGTGTTGCGAGGTTGTACAC
CCCCAAACTCACCCGAAGCCCTCTCGAAGGCGTATGCCGCTCCTCTGTCT
GAGATAGTTGCAATGCAACAAACTCTGCTTCGTCGAGCATGCTAGTCCCG
ACCTGATGCTGACAGAGTGATTGCGGTTTTGGCCTGGAGGCGTCAAAACC
GTTTCTTTTGAAACGAATCATTCGTTTTTTTTTTCTCACCCACAGGTGCA
AAACTTGGAGAAGGAGATCGTGAACATTCTCAGCGATGCAGACCCGTCGG
AGCTGAACTACATGCTGCCCAAGATCGGGCTAGGCCTACTGTTCTACAAG
GTCAAGGACCACGCGCCAATCAACCTGCACAGGACGAGACTGCTCAACGT
GCTCGCCGACAACCGCATATCGGTGAGACGCGTTTTCGTAGCACCGGAGG
GGGGGGAGGGGGGGGATAGGTTTGACTGCTTGGTGGGGGAGGGATCCTGG
CTATATTTTCGAATGTCGGTGGTTGGTGCCTCGAAGTATCGGTGAGGAGG
ATAGGGGTAGAAGGGAATGACTCCACGGTTCGTGAATGCTTCCCGGTGTC
TGACCTTTCCCACACAGCAGTGAGAGGTGCGCCTTCGTATCGCCTTGTAC
GATGCAAAATTTTCTACGAAAGCCGCGATGAAGGCTGGGTGCTCAATAGA
GGAGTTCGTTTTTGAGGCTCTCACGGAGTGCGCGTTCCGCATGTACCGAA
GGTTTTCCGCTGGGACCCCCTGCAAGACACCGACTCGCTGCCGCACCCCC
CCATTGGCCTCCGCGAATGAAACTGTAACTGTTTGTGCATGTACTGCTGT
GCAGGACCTTAACGTGACATCGCGAGCTCTCGTGCTCGACGCTCTCCAGC
AGCTAAAGCTTTCTGCTCACAAAGACAGGTGAGCCTTGTTTGCTTCCGTG
TAAACGATAGTTTCGTTGTTGTCGTTATGGTTGTTCTTTGCTTTAGATGC
GTTTTGTATCTTTCTTTTGCCTCCCGTGTGTTTAATGGTTTCGATTTTGT
CGTTGTTGTTCTTTGCAAGGTGTGTGTGTTTTTTTGTTTTTTCGGCTCCG
TGTGTTTGATGGTTTCGATTTTGTCGTTGTTGTACTCTTACGGCGGTATG
CGGCGGAATGAACCTCGGCGATTCCTTGCGTGAGTGTCGACGCACCTACC
ACTCTCGCCACAAAGCTCGCCGGTCATCCGGGGTCCCAGACGCTAACTCC
CCGTGCCTCGCCGTACTGCCGTGTTAATACTTTCCTTCCACGTGTTTAGC
GAGACGTACGCGAAGAAAATCATCTTGAAGACGAAAGGAGACGACTTGTC
GGAGCTGAAGAGCCTAACCGACGCGAAGGGCGACATCCACTCCATACACA
AGCTCGTCTATCGCGACATCAAGGACGTGGCTGTCAGAGAGGAGGTGCGA
ACGACGTCGATCGACTCAACCAACGGCATTCGTGCAAGCGTGGTGTTGGC
AGAGTTGCGCGAATGTCATCAGCTATGGAAACAGTGTGCGCGCACATCAA
CACGGCGGTGGGGAAGTGTGCGGTCGTTTCGTGTGCCACGGTTGTCCTCC
GGAGCTATTTCCAGGGGTTGATTCGACGTCTGGGTGACGACCGGAGGTTG
TAATCCTTTACCCGTGCGTGCTGGCGCGCTCTATGTCGGGATGTCAAGAC
GTGACGATAGCGGCGTAACTGACGATGGGAACAGTGCAGTTCACAGTTGA
CCCGGATTTCCCAATCGACAATAGAGCTTTGCGGCTGGAGTCGTGCGAAT
CGCTGCCGCTGTAAATGCCGACAGCTTCAGAGTAACAACAACAACAACAA
CAACAACAACAACAACAAGCACAACTTCGGGCCGCTCAAGCTCCATGATA
ACGGTCAAAGAACTTATTAATGGCGCGTGTCGTGAAGTCTACGTACGGCA
TATTGTCATGTGACGAAATCAACTGGGAAAATGTTTTGTTCCGCCCGAAG
GAGGATGTCGGAAACTAAAATCGCCGTCAGCGATATCAAGAATAGACGTT
TTGTCGCGAGCCAGGTGCTGAAGCACATCGCCAACCAGGCCAAGGTGCAG
GCGGCGCACATGCGACTCGGGACCCGCACGGGGAGCAGGCGCAGCGGGAA
GGCGTGGCGCAAGATCCTCTCCGACGTCGACGACACGTTGACCTCATCAG
GTAAGCGTTTCTACTCTTGGTGCATGATTCATGGAAGTATGTGCTTGTTG
CAGTTTGCTGCACTTCACCGTCAACCCGCACCCCTACGGTTGTTGTTGGT
GTTTCGGTGGGGATTGAGGTCGTATGGTGCATGCACAGAGGACGGTGTGC
GTTGGTTTTGTGTGCCGTGTAGACGACGCCGCGGACGTATGCAGAAGATA
CTCTGAATCCTTTGGTGGAGCTTGTTACCTCTTGCCTCTTGTTCATTTTT
ATGTTTTGCACTAAAGCCTTTTGGGTATACATGTGTGTGTGTGTGAGAGC
GAGAGGAGAGAAGCTGAGACAGCGACTGACACAAACAGAGACAGAGACAG
ACACACAGACATTGGAAGAGATGGGGGGAGGGGGCTTGACTTCTGTAATC
CCCGTAGGGTATTGCTCTCTGGATTCACTTACTTCTGGTCCTCAACATGA
ATAGGTAGCGCACGCGGCCGTATTTTTAAACGCCCTTCCTTGCCCAACCA
GTTTTCGCGCAGTACACACATGTTCGTACTGGCGAGTCCGCGTATGTTTG
TTCTTGTTGGCATTCTCGTAGGGGGGCGTTTCCCGGCGGGTGTGGACGCG
CGGTATCCCCGCAAGAGCGTCTACCCTGGCGTCCTAGACTTTTACCGAGA
GCTGGACTTGGGCGCCAACGGGCCGAGCGAATGGCCGCAGGGCNGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTTGCCATGAGGT
GAAGGCGTATTCGTTTTTGCTGGAAGGTGTGTTGTCGGCGAGCGTCAAGG
TTTGGACAGAGGTGCCGTGCGTGCTGGATGTGCGTGGCTGGCTTTTCCTT
TTTGTCCAGCCAAGAGTCGAAGTTGGTACAGTCGAGGGACCTCTATGGTG
CCTGTATGTGTCGAGAGATTTCACCGGCGCTAAACCGGGCACCCGGCGCT
GTTGCGAATAATGCCAAAACGGCACTGTTGAGGGCTAGCCAATCCCTCAT
TAGTGCCCGTCTGGCACTATAACAATGAGAACGTGTGCGATTTTATGGTT
TAGCGCTCACGCTTGCGGGGCCAAGTCAGTACTGTATTATAGCACGAAAT
GCATCGACACTGCTGTTATGTGAAGTTCTAGTGTAGGCCTGGGCAGACTT
TCTTTCCCGCGACACGTGCGGTTTCACCCTGTCGAGCCCACAAGAGTTTT
GTAAAATAAGATCGTTGCATTTCGGGCTACAGCAGTGCCTCACCAAGGCT
AGTCGACGGCGAAAGGGAAACCCACATCATGCACCCGAGTAGCCTGTGAC
CGGC

Coding sequence (CDS) from alignment at Scaffold_523:750282..755385+

>EsuBft225_20a-0001 ID=EsuBft225_20a-0001|Name=EsuBft225_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1272bp|location=Sequence derived from alignment at Scaffold_523:750282..755385+ (Ectocarpus subulatus male Bft15b)
ATGCCTATGGGCGAGGACCCACGGCATGGGCTGCTTGTGGCGCTGGTTGT
GGGCCTGGTCGGCGTGCTGCTCCTGATCTTCGCGGCGCTGGCGGTTGCAC
CCGTGCTCGTGATCGTGCTGGGGCTGATGACGTACGTGGTGTGGTGGTAT
GTCTCACGGGAAGACACCTCCTACATGCACCACGCGCAGGAACACGAGAA
CCGGTTCTGGACTACGGTGGCGTTTTGCTTCTCGGGGGCGTTGGTGTTCG
TTCATGACAGTCCCGTGGCCTTGGGGCAATGGTCCCCCGTGCTGGGGTTC
CTTTTCGTCATGATGTTCACCTTCTCGGTGCACAGCTACGATCGACAGCA
CGATGAGATCCGTTCATTGGAGTTGGGCGTTGGGCGAAGCCTCGCAAGCG
TGTCGGACAGCGGCGCTTGGGTCCCCGCCGATTACCCTTCCGTCCGGGCT
TCGCGGCCCCTCGGCGGGCCCTGTCCCTCCTCTGCTCACACCCGCCGCCC
TCGGCGTGCTCGTTCGGGTTCCCAGCTCCACCGGTCGAGAATCGGGCGTG
CGCCTAACTTTCGGCCATCGGTGGAAAGCAGCACTATGCTTCACAGCAGC
GTTCAGGATAAGTGCCGGCGCATCTCCCTGTGCCTCAGCAAGCTCGACAA
CCGGCTCGTGGCAACCAACCTCAACCACATGCTCTGGGCGGATATGGTGC
AAAACTTGGAGAAGGAGATCGTGAACATTCTCAGCGATGCAGACCCGTCG
GAGCTGAACTACATGCTGCCCAAGATCGGGCTAGGCCTACTGTTCTACAA
GGTCAAGGACCACGCGCCAATCAACCTGCACAGGACGAGACTGCTCAACG
TGCTCGCCGACAACCGCATATCGGACCTTAACGTGACATCGCGAGCTCTC
GTGCTCGACGCTCTCCAGCAGCTAAAGCTTTCTGCTCACAAAGACAGCGA
GACGTACGCGAAGAAAATCATCTTGAAGACGAAAGGAGACGACTTGTCGG
AGCTGAAGAGCCTAACCGACGCGAAGGGCGACATCCACTCCATACACAAG
CTCGTCTATCGCGACATCAAGGACGTGGCTGTCAGAGAGGAGGTGCTGAA
GCACATCGCCAACCAGGCCAAGGTGCAGGCGGCGCACATGCGACTCGGGA
CCCGCACGGGGAGCAGGCGCAGCGGGAAGGCGTGGCGCAAGATCCTCTCC
GACGTCGACGACACGTTGACCTCATCAGCACGAAATGCATCGACACTGCT
GTTATGTGAAGTTCTAGTGTAG